Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Smndc1-201ENSMUST00000025997 2125 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 Nnt-203ENSMUST00000109204 3198 ntTSL 5 BASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 Adcyap1-201ENSMUST00000064775 2088 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 Lrrc36-201ENSMUST00000067305 2082 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 Anxa4-202ENSMUST00000113675 2030 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 Metap2-208ENSMUST00000181091 1876 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 Sparcl1-201ENSMUST00000031249 2759 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 Tmprss3-201ENSMUST00000024833 2731 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 Gm18806-201ENSMUST00000207607 1775 ntBASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 AC166836.1-201ENSMUST00000219933 1795 ntBASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 Mbtps1-201ENSMUST00000081381 4195 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Upf3bQ3ULL6 Tmem176b-202ENSMUST00000164733 1648 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Upf3bQ3ULL6 3830406C13Rik-209ENSMUST00000224389 2444 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
Upf3bQ3ULL6 Nnt-201ENSMUST00000069902 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Upf3bQ3ULL6 A430033K04Rik-203ENSMUST00000198958 2264 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Upf3bQ3ULL6 Cd2bp2-207ENSMUST00000206026 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Upf3bQ3ULL6 AC122811.1-201ENSMUST00000222257 2921 ntBASIC12.22□□□□□ -0.45
Upf3bQ3ULL6 Nek4-201ENSMUST00000050171 2793 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Upf3bQ3ULL6 Gm10432-202ENSMUST00000223300 4791 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Upf3bQ3ULL6 Rbm6-201ENSMUST00000035201 3999 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Upf3bQ3ULL6 Anapc4-201ENSMUST00000031072 3854 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Upf3bQ3ULL6 Rasgrp4-208ENSMUST00000161522 3242 ntTSL 5 BASIC12.22□□□□□ -0.45
Upf3bQ3ULL6 Cdc42se1-204ENSMUST00000107201 907 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Upf3bQ3ULL6 Gm15725-201ENSMUST00000119947 1090 ntBASIC12.22□□□□□ -0.45
Upf3bQ3ULL6 Gm15329-201ENSMUST00000121408 155 ntBASIC12.22□□□□□ -0.45
Upf3bQ3ULL6 Gm9089-201ENSMUST00000122027 526 ntBASIC12.22□□□□□ -0.45
Upf3bQ3ULL6 Gm8737-201ENSMUST00000122208 642 ntBASIC12.22□□□□□ -0.45
Upf3bQ3ULL6 Gm12316-201ENSMUST00000125853 406 ntTSL 5 BASIC12.22□□□□□ -0.45
Upf3bQ3ULL6 Gm23045-201ENSMUST00000175041 96 ntBASIC12.22□□□□□ -0.45
Upf3bQ3ULL6 Mir6546-201ENSMUST00000184460 62 ntBASIC12.22□□□□□ -0.45
Upf3bQ3ULL6 1700119H24Rik-201ENSMUST00000187558 588 ntTSL 5 BASIC12.22□□□□□ -0.45
Upf3bQ3ULL6 Ighv5-11-201ENSMUST00000193354 371 ntBASIC12.22□□□□□ -0.45
Upf3bQ3ULL6 Gm37981-201ENSMUST00000194280 535 ntBASIC12.22□□□□□ -0.45
Upf3bQ3ULL6 Mrnip-201ENSMUST00000020647 1142 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Upf3bQ3ULL6 Hcst-203ENSMUST00000208740 366 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Upf3bQ3ULL6 Apoc4-201ENSMUST00000003071 538 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Upf3bQ3ULL6 Cthrc1-201ENSMUST00000067072 1166 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Upf3bQ3ULL6 Mill2-201ENSMUST00000072386 1121 ntAPPRIS P4 TSL 1 (best) BASIC12.22□□□□□ -0.45
Upf3bQ3ULL6 Mrpl18-201ENSMUST00000079121 1219 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Upf3bQ3ULL6 Lhfpl5-201ENSMUST00000080780 1248 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Upf3bQ3ULL6 Orc4-202ENSMUST00000090976 1153 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Upf3bQ3ULL6 Rbm6-207ENSMUST00000183032 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Upf3bQ3ULL6 Slc10a3-204ENSMUST00000114147 1708 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Upf3bQ3ULL6 Sec22b-201ENSMUST00000029476 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Upf3bQ3ULL6 Fcrla-201ENSMUST00000046322 1679 ntAPPRIS P4 TSL 1 (best) BASIC12.22□□□□□ -0.45
Upf3bQ3ULL6 Chrne-201ENSMUST00000014753 1616 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Upf3bQ3ULL6 Gm4593-201ENSMUST00000205334 1555 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Upf3bQ3ULL6 Palb2-204ENSMUST00000106469 2559 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Upf3bQ3ULL6 Nrf1-219ENSMUST00000167972 1541 ntTSL 5 BASIC12.21□□□□□ -0.45
Upf3bQ3ULL6 Nrf1-220ENSMUST00000170535 1527 ntTSL 5 BASIC12.21□□□□□ -0.45
Upf3bQ3ULL6 Srsf5-201ENSMUST00000094693 1527 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
Upf3bQ3ULL6 Gpat3-202ENSMUST00000092990 3035 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Upf3bQ3ULL6 Sel1l-210ENSMUST00000178462 6150 ntTSL 5 BASIC12.21□□□□□ -0.45
Upf3bQ3ULL6 Ttc27-201ENSMUST00000024882 2820 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Upf3bQ3ULL6 Gm33677-201ENSMUST00000220074 2765 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Upf3bQ3ULL6 Bicra-204ENSMUST00000210781 5975 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
Upf3bQ3ULL6 Sult1a1-201ENSMUST00000106371 1370 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Upf3bQ3ULL6 Sult1a1-202ENSMUST00000106372 1369 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Upf3bQ3ULL6 Gm29295-201ENSMUST00000190004 1371 ntTSL 5 BASIC12.21□□□□□ -0.45
Upf3bQ3ULL6 Lox-201ENSMUST00000025409 3604 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Upf3bQ3ULL6 Vtn-201ENSMUST00000017488 1744 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Upf3bQ3ULL6 Tatdn3-203ENSMUST00000110891 1214 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Upf3bQ3ULL6 Tatdn3-204ENSMUST00000110893 1242 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Upf3bQ3ULL6 Ldha-ps2-201ENSMUST00000118722 1057 ntBASIC12.21□□□□□ -0.45
Upf3bQ3ULL6 Gm15549-201ENSMUST00000121595 622 ntBASIC12.21□□□□□ -0.45
Upf3bQ3ULL6 AA387200-201ENSMUST00000147463 1177 ntTSL 3 BASIC12.21□□□□□ -0.45
Upf3bQ3ULL6 Gm14198-201ENSMUST00000153208 948 ntTSL 2 BASIC12.21□□□□□ -0.45
Upf3bQ3ULL6 Cryge-202ENSMUST00000161960 690 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Upf3bQ3ULL6 Gm29418-201ENSMUST00000186162 647 ntTSL 5 BASIC12.21□□□□□ -0.45
Upf3bQ3ULL6 Gm43186-201ENSMUST00000198130 824 ntBASIC12.21□□□□□ -0.45
Upf3bQ3ULL6 Gm35549-202ENSMUST00000203656 1009 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
Upf3bQ3ULL6 Colec11-203ENSMUST00000220836 887 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Upf3bQ3ULL6 CT009546.1-201ENSMUST00000222573 1120 ntBASIC12.21□□□□□ -0.45
Upf3bQ3ULL6 Togaram1-207ENSMUST00000223166 6386 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Upf3bQ3ULL6 Larp7-201ENSMUST00000029588 2121 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
Upf3bQ3ULL6 Plin4-201ENSMUST00000002908 5755 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
Upf3bQ3ULL6 Gm37931-201ENSMUST00000194686 2866 ntBASIC12.21□□□□□ -0.45
Upf3bQ3ULL6 Cacna1s-201ENSMUST00000112064 6251 ntAPPRIS P3 TSL 2 BASIC12.21□□□□□ -0.46
Upf3bQ3ULL6 Gm43102-201ENSMUST00000201004 2324 ntBASIC12.21□□□□□ -0.46
Upf3bQ3ULL6 Fam189b-201ENSMUST00000041913 3083 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Upf3bQ3ULL6 Palld-202ENSMUST00000121200 4193 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Upf3bQ3ULL6 Akap10-203ENSMUST00000108710 3394 ntTSL 2 BASIC12.21□□□□□ -0.46
Upf3bQ3ULL6 Pde3a-201ENSMUST00000043259 12302 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Upf3bQ3ULL6 Sypl2-201ENSMUST00000141387 4090 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Upf3bQ3ULL6 Ncf4-201ENSMUST00000096357 1464 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Upf3bQ3ULL6 Lgr5-208ENSMUST00000173740 2508 ntTSL 5 BASIC12.2□□□□□ -0.46
Upf3bQ3ULL6 Dtl-201ENSMUST00000027933 4212 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Upf3bQ3ULL6 Pla2g7-201ENSMUST00000024706 2097 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Upf3bQ3ULL6 Gm7964-201ENSMUST00000051522 1378 ntBASIC12.2□□□□□ -0.46
Upf3bQ3ULL6 Adcy8-201ENSMUST00000023007 6990 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Upf3bQ3ULL6 Plekhm1-201ENSMUST00000041272 5968 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Upf3bQ3ULL6 Grm1-202ENSMUST00000105560 4265 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Upf3bQ3ULL6 Pmaip1-201ENSMUST00000025399 2646 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Upf3bQ3ULL6 Ltbp1-202ENSMUST00000112514 4870 ntAPPRIS ALT1 TSL 5 BASIC12.2□□□□□ -0.46
Upf3bQ3ULL6 Dnajb6-201ENSMUST00000008733 2918 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Upf3bQ3ULL6 1700025G04Rik-201ENSMUST00000044581 9559 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Upf3bQ3ULL6 Gm12446-201ENSMUST00000123933 798 ntTSL 3 BASIC12.2□□□□□ -0.46
Upf3bQ3ULL6 Gm12951-201ENSMUST00000150216 434 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Upf3bQ3ULL6 Higd1c-202ENSMUST00000177211 555 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Upf3bQ3ULL6 Gm9211-201ENSMUST00000182882 975 ntBASIC12.2□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 49.2 ms