Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Tifa-205ENSMUST00000171621 2547 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col28a1Q2UY11 Gm14150-201ENSMUST00000122404 1354 ntBASIC11.11□□□□□ -0.63
Col28a1Q2UY11 Ddx11-201ENSMUST00000163605 4149 ntAPPRIS P2 TSL 5 BASIC11.11□□□□□ -0.63
Col28a1Q2UY11 D130019J16Rik-201ENSMUST00000193261 2158 ntBASIC11.11□□□□□ -0.63
Col28a1Q2UY11 Auts2-209ENSMUST00000161804 5392 ntAPPRIS P5 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col28a1Q2UY11 AC167565.1-201ENSMUST00000226980 1833 ntBASIC11.11□□□□□ -0.63
Col28a1Q2UY11 Arc-202ENSMUST00000110009 3054 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col28a1Q2UY11 Arc-201ENSMUST00000023268 3055 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col28a1Q2UY11 Rsrc2-202ENSMUST00000057795 2270 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
Col28a1Q2UY11 Gm28774-201ENSMUST00000187087 1498 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Col28a1Q2UY11 Gm4864-201ENSMUST00000219894 1461 ntBASIC11.11□□□□□ -0.63
Col28a1Q2UY11 Tmem159-201ENSMUST00000033210 1484 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col28a1Q2UY11 Kcnh5-201ENSMUST00000042299 4058 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col28a1Q2UY11 Furin-201ENSMUST00000107362 4166 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
Col28a1Q2UY11 Sel1l-204ENSMUST00000167466 5544 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Col28a1Q2UY11 Pip5kl1-201ENSMUST00000055304 1577 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col28a1Q2UY11 Prr30-202ENSMUST00000187304 2104 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
Col28a1Q2UY11 Wdr78-203ENSMUST00000106868 4045 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
Col28a1Q2UY11 Ccdc96-201ENSMUST00000060100 3585 ntAPPRIS P1 BASIC11.11□□□□□ -0.63
Col28a1Q2UY11 Zfp286-211ENSMUST00000207597 1668 ntTSL 5 BASIC11.11□□□□□ -0.63
Col28a1Q2UY11 Rassf4-201ENSMUST00000035842 6460 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col28a1Q2UY11 Rasal1-201ENSMUST00000031606 3212 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col28a1Q2UY11 Unkl-201ENSMUST00000015271 3414 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Col28a1Q2UY11 Capn15-201ENSMUST00000041641 3520 ntAPPRIS P3 TSL 5 BASIC11.1□□□□□ -0.63
Col28a1Q2UY11 Dhx34-201ENSMUST00000094816 4073 ntAPPRIS P2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col28a1Q2UY11 Ttc29-202ENSMUST00000109902 1416 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
Col28a1Q2UY11 6030466F02Rik-201ENSMUST00000212339 1434 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Col28a1Q2UY11 Stpg3-201ENSMUST00000043774 1430 ntAPPRIS P2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col28a1Q2UY11 Raph1-204ENSMUST00000140485 10024 ntAPPRIS P2 TSL 5 BASIC11.1□□□□□ -0.63
Col28a1Q2UY11 Sgce-209ENSMUST00000133306 1619 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Col28a1Q2UY11 Chrne-201ENSMUST00000014753 1616 ntAPPRIS ALT2 TSL 5 BASIC11.1□□□□□ -0.63
Col28a1Q2UY11 Gm37613-201ENSMUST00000195677 3580 ntBASIC11.1□□□□□ -0.63
Col28a1Q2UY11 Adam12-201ENSMUST00000067680 7675 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col28a1Q2UY11 AC153380.1-201ENSMUST00000214959 2364 ntBASIC11.1□□□□□ -0.63
Col28a1Q2UY11 Zfp30-202ENSMUST00000122387 3342 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Col28a1Q2UY11 Man2b2-201ENSMUST00000031002 3330 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col28a1Q2UY11 Serpine1-202ENSMUST00000077523 2697 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
Col28a1Q2UY11 Tbl2-204ENSMUST00000153183 7488 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col28a1Q2UY11 Mdh1-201ENSMUST00000102874 2122 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col28a1Q2UY11 Il15ra-204ENSMUST00000114832 468 ntTSL 5 BASIC11.1□□□□□ -0.63
Col28a1Q2UY11 Gm13996-201ENSMUST00000118456 430 ntBASIC11.1□□□□□ -0.63
Col28a1Q2UY11 1810063I02Rik-201ENSMUST00000130205 274 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Col28a1Q2UY11 Gm14051-201ENSMUST00000131603 377 ntTSL 3 BASIC11.1□□□□□ -0.63
Col28a1Q2UY11 Hmgn1-202ENSMUST00000133885 261 ntTSL 5 BASIC11.1□□□□□ -0.63
Col28a1Q2UY11 Rps19-ps11-201ENSMUST00000160308 433 ntBASIC11.1□□□□□ -0.63
Col28a1Q2UY11 1700030M09Rik-202ENSMUST00000181679 964 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Col28a1Q2UY11 Uba52-ps-201ENSMUST00000183770 379 ntBASIC11.1□□□□□ -0.63
Col28a1Q2UY11 Gm43584-201ENSMUST00000199762 605 ntTSL 3 BASIC11.1□□□□□ -0.63
Col28a1Q2UY11 Gm43050-201ENSMUST00000201062 338 ntTSL 2 BASIC11.1□□□□□ -0.63
Col28a1Q2UY11 Rassf4-202ENSMUST00000203029 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col28a1Q2UY11 Gm19287-201ENSMUST00000203190 358 ntBASIC11.1□□□□□ -0.63
Col28a1Q2UY11 Gm44100-201ENSMUST00000204329 436 ntBASIC11.1□□□□□ -0.63
Col28a1Q2UY11 Gm31224-201ENSMUST00000212682 513 ntTSL 3 BASIC11.1□□□□□ -0.63
Col28a1Q2UY11 AC125206.1-201ENSMUST00000214070 739 ntTSL 5 BASIC11.1□□□□□ -0.63
Col28a1Q2UY11 CT009486.1-201ENSMUST00000222047 661 ntTSL 3 BASIC11.1□□□□□ -0.63
Col28a1Q2UY11 Olfr368-201ENSMUST00000053990 985 ntAPPRIS P1 BASIC11.1□□□□□ -0.63
Col28a1Q2UY11 Ifi27-201ENSMUST00000066701 889 ntAPPRIS P4 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col28a1Q2UY11 Adm2-201ENSMUST00000066991 1043 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col28a1Q2UY11 Knop1-202ENSMUST00000063607 4884 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col28a1Q2UY11 Tubb4a-201ENSMUST00000071135 2228 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col28a1Q2UY11 Capza1-201ENSMUST00000094028 3193 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col28a1Q2UY11 Gm45278-201ENSMUST00000209650 2414 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Col28a1Q2UY11 Crcp-201ENSMUST00000026608 1492 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col28a1Q2UY11 Kcnh3-201ENSMUST00000041415 3583 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col28a1Q2UY11 Tmod2-201ENSMUST00000064433 9884 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col28a1Q2UY11 Gm6559-201ENSMUST00000204678 1694 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Col28a1Q2UY11 Spesp1-201ENSMUST00000056949 3042 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col28a1Q2UY11 Gnl2-201ENSMUST00000030684 2366 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col28a1Q2UY11 Piwil1-201ENSMUST00000086056 4016 ntAPPRIS P2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col28a1Q2UY11 Pisd-203ENSMUST00000120591 2491 ntAPPRIS ALT2 TSL 5 BASIC11.1□□□□□ -0.63
Col28a1Q2UY11 Nfx1-201ENSMUST00000030133 4349 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Col28a1Q2UY11 Ces2e-201ENSMUST00000034355 2699 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col28a1Q2UY11 Topors-201ENSMUST00000042575 3856 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col28a1Q2UY11 Gm17518-201ENSMUST00000181232 1346 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Bcl11a-204ENSMUST00000118955 1505 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 AC124433.1-202ENSMUST00000224762 1535 ntBASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Cdc20b-201ENSMUST00000109244 1620 ntAPPRIS P2 TSL 5 BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Cdc20b-203ENSMUST00000181117 1608 ntAPPRIS ALT2 TSL 5 BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Riox2-206ENSMUST00000160571 2244 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Dpep1-201ENSMUST00000019422 2236 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 C1qtnf3-201ENSMUST00000022853 2338 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Ank2-221ENSMUST00000182994 2715 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Pla2g6-203ENSMUST00000172403 2943 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Ccdc57-201ENSMUST00000056781 3403 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Pspc1-201ENSMUST00000022507 4114 ntAPPRIS P2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Eml5-201ENSMUST00000065716 9482 ntTSL 5 BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Eif3a-201ENSMUST00000025955 5176 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Mroh8-202ENSMUST00000143663 3460 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Zfp384-206ENSMUST00000112425 2691 ntTSL 5 BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Tagln2-202ENSMUST00000111230 1586 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Nedd9-202ENSMUST00000163623 4626 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Pex13-201ENSMUST00000020523 4146 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Zfp157-203ENSMUST00000110912 886 ntTSL 3 BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Snx29-202ENSMUST00000115814 1125 ntTSL 5 BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 n-R5s14-201ENSMUST00000122688 107 ntBASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Sumo3-203ENSMUST00000124024 776 ntTSL 2 BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Gm14597-202ENSMUST00000129769 715 ntAPPRIS P5 TSL 3 BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Mir1943-201ENSMUST00000158276 73 ntBASIC11.09□□□□□ -0.63
Col28a1Q2UY11 Gm17227-202ENSMUST00000170286 1016 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Col28a1Q2UY11 1110038B12Rik-203ENSMUST00000173070 434 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Retrieved 100 of 76,532 protein–RNA pairs in 56.7 ms