Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Lypd2-201ENSMUST00000023260 513 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
Hmgb3O54879 Ifitm3-201ENSMUST00000026565 678 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
Hmgb3O54879 4930562F07Rik-201ENSMUST00000028061 830 ntTSL 1 (best) BASIC9.41□□□□□ -0.9
Hmgb3O54879 Tm2d3-201ENSMUST00000032726 908 ntAPPRIS ALT2 TSL 1 (best) BASIC9.41□□□□□ -0.9
Hmgb3O54879 Lhfpl5-201ENSMUST00000080780 1248 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
Hmgb3O54879 Sgsm1-202ENSMUST00000057209 4339 ntTSL 1 (best) BASIC9.41□□□□□ -0.9
Hmgb3O54879 Pou1f1-201ENSMUST00000004964 1773 ntTSL 5 BASIC9.41□□□□□ -0.9
Hmgb3O54879 Pram1-201ENSMUST00000052079 2278 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
Hmgb3O54879 Atp1a2-202ENSMUST00000097464 3186 ntTSL 5 BASIC9.41□□□□□ -0.9
Hmgb3O54879 Arhgap19-202ENSMUST00000163265 5058 ntTSL 5 BASIC9.41□□□□□ -0.9
Hmgb3O54879 Gm42141-201ENSMUST00000196534 2172 ntBASIC9.41□□□□□ -0.9
Hmgb3O54879 Atp7b-201ENSMUST00000006742 6505 ntAPPRIS P2 TSL 1 (best) BASIC9.41□□□□□ -0.9
Hmgb3O54879 Myo9a-206ENSMUST00000136740 12252 ntAPPRIS P2 TSL 5 BASIC9.41□□□□□ -0.9
Hmgb3O54879 Adam8-202ENSMUST00000106069 3117 ntAPPRIS P3 TSL 1 (best) BASIC9.41□□□□□ -0.9
Hmgb3O54879 Adam8-201ENSMUST00000026546 3100 ntAPPRIS ALT2 TSL 1 (best) BASIC9.41□□□□□ -0.9
Hmgb3O54879 Prickle2-203ENSMUST00000113446 7860 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
Hmgb3O54879 Helz2-203ENSMUST00000121484 10063 ntTSL 5 BASIC9.41□□□□□ -0.9
Hmgb3O54879 Gm2464-201ENSMUST00000180838 2551 ntTSL 5 BASIC9.41□□□□□ -0.9
Hmgb3O54879 Ckap2-201ENSMUST00000046916 2593 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
Hmgb3O54879 Cd163-201ENSMUST00000032234 4404 ntAPPRIS P3 TSL 1 (best) BASIC9.41□□□□□ -0.9
Hmgb3O54879 Olfm4-201ENSMUST00000088735 1640 ntTSL 2 BASIC9.41□□□□□ -0.9
Hmgb3O54879 Scn8a-213ENSMUST00000201549 7120 ntAPPRIS P5 TSL 5 BASIC9.41□□□□□ -0.9
Hmgb3O54879 Dctn1-204ENSMUST00000113918 4321 ntTSL 5 BASIC9.41□□□□□ -0.9
Hmgb3O54879 Gmeb1-201ENSMUST00000030733 2485 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
Hmgb3O54879 Zfp593-201ENSMUST00000030644 1994 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
Hmgb3O54879 Thbd-201ENSMUST00000099270 3723 ntAPPRIS P1 BASIC9.41□□□□□ -0.9
Hmgb3O54879 Olfr56-203ENSMUST00000179282 1935 ntTSL 5 BASIC9.41□□□□□ -0.9
Hmgb3O54879 Cpne9-201ENSMUST00000041203 2777 ntAPPRIS P1 TSL 5 BASIC9.41□□□□□ -0.9
Hmgb3O54879 Ddx55-201ENSMUST00000071057 2799 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
Hmgb3O54879 P2ry1-202ENSMUST00000193201 3614 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
Hmgb3O54879 Zfp612-201ENSMUST00000058804 3180 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
Hmgb3O54879 Dnmt3l-202ENSMUST00000123940 1452 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
Hmgb3O54879 D730001G18Rik-202ENSMUST00000191407 1494 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
Hmgb3O54879 Gm5740-201ENSMUST00000211003 1857 ntBASIC9.4□□□□□ -0.9
Hmgb3O54879 Nbr1-203ENSMUST00000103099 4789 ntAPPRIS P3 TSL 1 (best) BASIC9.4□□□□□ -0.9
Hmgb3O54879 Syngr2-202ENSMUST00000120928 1402 ntTSL 2 BASIC9.4□□□□□ -0.9
Hmgb3O54879 Gmppb-201ENSMUST00000047947 1429 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
Hmgb3O54879 Shbg-201ENSMUST00000005334 1419 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
Hmgb3O54879 Gm14005-209ENSMUST00000224993 1832 ntBASIC9.4□□□□□ -0.9
Hmgb3O54879 Dpep1-201ENSMUST00000019422 2236 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
Hmgb3O54879 Atxn7l1-204ENSMUST00000125192 2644 ntAPPRIS ALT2 TSL 5 BASIC9.4□□□□□ -0.9
Hmgb3O54879 Tgfb1i1-201ENSMUST00000070656 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC9.4□□□□□ -0.9
Hmgb3O54879 Dhx34-207ENSMUST00000163968 3801 ntAPPRIS P2 TSL 1 (best) BASIC9.4□□□□□ -0.9
Hmgb3O54879 Fbxo7-204ENSMUST00000130320 5388 ntAPPRIS P3 TSL 1 (best) BASIC9.4□□□□□ -0.9
Hmgb3O54879 Zmym3-205ENSMUST00000119699 1750 ntTSL 5 BASIC9.4□□□□□ -0.9
Hmgb3O54879 Olfr582-202ENSMUST00000210119 1787 ntAPPRIS P1 TSL 5 BASIC9.4□□□□□ -0.9
Hmgb3O54879 Mthfsd-210ENSMUST00000139782 1366 ntTSL 5 BASIC9.4□□□□□ -0.9
Hmgb3O54879 Sept9-203ENSMUST00000100193 2924 ntAPPRIS P3 TSL 1 (best) BASIC9.4□□□□□ -0.9
Hmgb3O54879 Tyw3-201ENSMUST00000052774 4490 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
Hmgb3O54879 Gm37031-201ENSMUST00000195487 2530 ntBASIC9.4□□□□□ -0.9
Hmgb3O54879 Mthfd1l-203ENSMUST00000120585 3687 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
Hmgb3O54879 Gm35850-202ENSMUST00000211705 2120 ntBASIC9.4□□□□□ -0.9
Hmgb3O54879 Rp1l1-201ENSMUST00000058229 6684 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
Hmgb3O54879 Mtss1l-205ENSMUST00000144041 3225 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
Hmgb3O54879 Gm5620-201ENSMUST00000077991 1348 ntBASIC9.4□□□□□ -0.9
Hmgb3O54879 Gm37954-201ENSMUST00000195400 2071 ntBASIC9.4□□□□□ -0.9
Hmgb3O54879 Wbp1l-204ENSMUST00000138302 3900 ntAPPRIS P3 TSL 1 (best) BASIC9.4□□□□□ -0.9
Hmgb3O54879 Gem-202ENSMUST00000108304 2006 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
Hmgb3O54879 Kir3dl1-201ENSMUST00000113104 1031 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
Hmgb3O54879 Mymx-201ENSMUST00000113529 442 ntAPPRIS ALT2 TSL 2 BASIC9.4□□□□□ -0.9
Hmgb3O54879 Mup-ps23-201ENSMUST00000118063 630 ntBASIC9.4□□□□□ -0.9
Hmgb3O54879 Gm16177-201ENSMUST00000120728 718 ntBASIC9.4□□□□□ -0.9
Hmgb3O54879 Gm11960-201ENSMUST00000122068 925 ntBASIC9.4□□□□□ -0.9
Hmgb3O54879 Pcp2-206ENSMUST00000144977 534 ntAPPRIS ALT2 TSL 3 BASIC9.4□□□□□ -0.9
Hmgb3O54879 4932443L11Rik-201ENSMUST00000148353 414 ntTSL 5 BASIC9.4□□□□□ -0.9
Hmgb3O54879 Iqcf6-201ENSMUST00000171091 537 ntAPPRIS P1 TSL 5 BASIC9.4□□□□□ -0.9
Hmgb3O54879 Fam166b-206ENSMUST00000171134 1198 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
Hmgb3O54879 Gm20416-201ENSMUST00000174760 484 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
Hmgb3O54879 Gm11523-203ENSMUST00000184482 802 ntTSL 3 BASIC9.4□□□□□ -0.9
Hmgb3O54879 Gm28882-201ENSMUST00000185504 314 ntBASIC9.4□□□□□ -0.9
Hmgb3O54879 Gsdmcl-ps-204ENSMUST00000191285 637 ntTSL 3 BASIC9.4□□□□□ -0.9
Hmgb3O54879 Gm35986-201ENSMUST00000197370 655 ntTSL 2 BASIC9.4□□□□□ -0.9
Hmgb3O54879 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
Hmgb3O54879 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC9.4□□□□□ -0.9
Hmgb3O54879 1700011B04Rik-203ENSMUST00000220654 1033 ntTSL 5 BASIC9.4□□□□□ -0.9
Hmgb3O54879 1700011B04Rik-209ENSMUST00000221760 779 ntTSL 5 BASIC9.4□□□□□ -0.9
Hmgb3O54879 Mcpt1-201ENSMUST00000022836 1014 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
Hmgb3O54879 Wdr74-201ENSMUST00000049424 1204 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
Hmgb3O54879 Olfr524-201ENSMUST00000051943 1058 ntAPPRIS P1 BASIC9.4□□□□□ -0.9
Hmgb3O54879 Rhox2a-201ENSMUST00000063340 795 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
Hmgb3O54879 Olfr1413-201ENSMUST00000074859 1082 ntAPPRIS P1 BASIC9.4□□□□□ -0.9
Hmgb3O54879 Tanc1-203ENSMUST00000112568 7422 ntAPPRIS ALT2 TSL 5 BASIC9.4□□□□□ -0.9
Hmgb3O54879 Mknk2-201ENSMUST00000003433 3065 ntAPPRIS ALT2 TSL 1 (best) BASIC9.4□□□□□ -0.9
Hmgb3O54879 Gm2673-201ENSMUST00000120958 1608 ntBASIC9.4□□□□□ -0.9
Hmgb3O54879 Syne1-201ENSMUST00000041639 6990 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
Hmgb3O54879 Fam228a-201ENSMUST00000111154 3004 ntAPPRIS P2 TSL 1 (best) BASIC9.4□□□□□ -0.9
Hmgb3O54879 Atp6v0a4-202ENSMUST00000114908 3307 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
Hmgb3O54879 C130013H08Rik-201ENSMUST00000197569 3692 ntBASIC9.4□□□□□ -0.9
Hmgb3O54879 Pde1b-205ENSMUST00000227955 3258 ntAPPRIS ALT1 BASIC9.4□□□□□ -0.9
Hmgb3O54879 Jpt2-201ENSMUST00000024981 2933 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
Hmgb3O54879 Pip5k1b-201ENSMUST00000025800 2573 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
Hmgb3O54879 Nxpe5-203ENSMUST00000159964 3585 ntAPPRIS ALT2 TSL 5 BASIC9.4□□□□□ -0.91
Hmgb3O54879 Thbs4-201ENSMUST00000022213 3198 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.91
Hmgb3O54879 Cdhr4-211ENSMUST00000177173 2480 ntAPPRIS P1 TSL 5 BASIC9.4□□□□□ -0.91
Hmgb3O54879 H2-T10-201ENSMUST00000166442 1481 ntAPPRIS P1 TSL 5 BASIC9.4□□□□□ -0.91
Hmgb3O54879 Eno3-206ENSMUST00000170716 1461 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.91
Hmgb3O54879 Olfr464-204ENSMUST00000216461 2112 ntAPPRIS P1 TSL 5 BASIC9.4□□□□□ -0.91
Hmgb3O54879 Mageb4-201ENSMUST00000096378 2401 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.91
Hmgb3O54879 Amz1-202ENSMUST00000120630 4037 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.91
Hmgb3O54879 E230029C05Rik-203ENSMUST00000208028 2066 ntBASIC9.4□□□□□ -0.91
Retrieved 100 of 76,532 protein–RNA pairs in 145.7 ms