Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Cyp2a12-201ENSMUST00000075552 1681 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Smc1aQ9CU62 Myzap-201ENSMUST00000093823 2283 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Smc1aQ9CU62 Gcc1-202ENSMUST00000090511 4650 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Smc1aQ9CU62 Tmub2-201ENSMUST00000036376 1939 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Smc1aQ9CU62 Poc5-201ENSMUST00000099295 5183 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Smc1aQ9CU62 Gm42141-201ENSMUST00000196534 2172 ntBASIC12.86□□□□□ -0.35
Smc1aQ9CU62 Stim1-209ENSMUST00000211457 2183 ntTSL 5 BASIC12.86□□□□□ -0.35
Smc1aQ9CU62 Topors-201ENSMUST00000042575 3856 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Smc1aQ9CU62 Nrg1-211ENSMUST00000208497 2096 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Smc1aQ9CU62 Grap2-201ENSMUST00000043149 3158 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Smc1aQ9CU62 Aldoc-202ENSMUST00000102478 1700 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Smc1aQ9CU62 Slc22a14-201ENSMUST00000093775 2213 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Smc1aQ9CU62 Grin2b-205ENSMUST00000152012 2461 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Smc1aQ9CU62 Ap2b1-206ENSMUST00000176523 2742 ntTSL 5 BASIC12.85□□□□□ -0.35
Smc1aQ9CU62 Cyp4b1-201ENSMUST00000102707 1892 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Smc1aQ9CU62 Tex2-202ENSMUST00000103070 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Smc1aQ9CU62 Sparc-202ENSMUST00000108858 2115 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Smc1aQ9CU62 Cd93-201ENSMUST00000099269 6677 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Smc1aQ9CU62 AC174678.2-201ENSMUST00000156420 3275 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Smc1aQ9CU62 Gdap2-201ENSMUST00000029459 3008 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Smc1aQ9CU62 Srrm2-201ENSMUST00000088621 8564 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Smc1aQ9CU62 Ccnk-202ENSMUST00000221167 2789 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Smc1aQ9CU62 Lyar-202ENSMUST00000114106 1504 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Smc1aQ9CU62 Gm14460-201ENSMUST00000121511 639 ntBASIC12.85□□□□□ -0.35
Smc1aQ9CU62 Immp2l-202ENSMUST00000132121 1147 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Smc1aQ9CU62 Tspo2-205ENSMUST00000162481 473 ntTSL 5 BASIC12.85□□□□□ -0.35
Smc1aQ9CU62 Gm8100-201ENSMUST00000182906 988 ntBASIC12.85□□□□□ -0.35
Smc1aQ9CU62 Mir6546-201ENSMUST00000184460 62 ntBASIC12.85□□□□□ -0.35
Smc1aQ9CU62 Mrnip-201ENSMUST00000020647 1142 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Smc1aQ9CU62 Ddo-207ENSMUST00000216830 806 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Smc1aQ9CU62 AC134869.3-201ENSMUST00000225581 343 ntAPPRIS P1 BASIC12.85□□□□□ -0.35
Smc1aQ9CU62 Gm5965-201ENSMUST00000009191 588 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Smc1aQ9CU62 Rsg1-201ENSMUST00000097813 985 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Smc1aQ9CU62 Ddx11-201ENSMUST00000163605 4149 ntAPPRIS P2 TSL 5 BASIC12.85□□□□□ -0.35
Smc1aQ9CU62 Tef-202ENSMUST00000109553 4401 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Smc1aQ9CU62 Ppp1r18-201ENSMUST00000113814 3131 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Smc1aQ9CU62 Pcp4l1-201ENSMUST00000111332 1577 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Smc1aQ9CU62 Gm4755-201ENSMUST00000181803 2647 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Smc1aQ9CU62 Pcdhb14-201ENSMUST00000052387 8695 ntAPPRIS P1 BASIC12.85□□□□□ -0.35
Smc1aQ9CU62 Pip5k1a-204ENSMUST00000107232 3437 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
Smc1aQ9CU62 Aar2-202ENSMUST00000109570 2766 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Smc1aQ9CU62 Sec14l1-202ENSMUST00000090433 4654 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Smc1aQ9CU62 Ccdc32-201ENSMUST00000036470 1870 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Smc1aQ9CU62 Gm36940-201ENSMUST00000194281 2036 ntBASIC12.84□□□□□ -0.35
Smc1aQ9CU62 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Smc1aQ9CU62 Fam114a2-201ENSMUST00000020831 2557 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Smc1aQ9CU62 Dsc2-201ENSMUST00000039247 4630 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Smc1aQ9CU62 Myh6-201ENSMUST00000081857 6113 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Smc1aQ9CU62 Fcrl1-203ENSMUST00000167200 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Smc1aQ9CU62 Gm21103-202ENSMUST00000170923 1761 ntAPPRIS P5 TSL 5 BASIC12.84□□□□□ -0.35
Smc1aQ9CU62 Chd3-202ENSMUST00000108661 7261 ntAPPRIS P2 TSL 5 BASIC12.84□□□□□ -0.35
Smc1aQ9CU62 Megf8-201ENSMUST00000128119 10040 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Smc1aQ9CU62 Tcf7l2-207ENSMUST00000111653 2629 ntAPPRIS ALT2 TSL 2 BASIC12.84□□□□□ -0.35
Smc1aQ9CU62 Chrng-201ENSMUST00000027470 2780 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Smc1aQ9CU62 Hsd3b6-201ENSMUST00000029463 1802 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Smc1aQ9CU62 Smim1-214ENSMUST00000182191 3535 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Smc1aQ9CU62 Urad-201ENSMUST00000100433 766 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Smc1aQ9CU62 Timm10b-204ENSMUST00000106784 494 ntTSL 3 BASIC12.84□□□□□ -0.35
Smc1aQ9CU62 Ccl1-202ENSMUST00000108189 514 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Smc1aQ9CU62 Rps9-204ENSMUST00000108625 914 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
Smc1aQ9CU62 Tmem135-202ENSMUST00000117852 2986 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Smc1aQ9CU62 A430060F13Rik-201ENSMUST00000124176 378 ntBASIC12.84□□□□□ -0.35
Smc1aQ9CU62 Rdh9-203ENSMUST00000136223 1276 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Smc1aQ9CU62 Scgb1b19-201ENSMUST00000165813 418 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Smc1aQ9CU62 1700121N20Rik-201ENSMUST00000167922 1027 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Smc1aQ9CU62 C730034F03Rik-201ENSMUST00000168646 1280 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
Smc1aQ9CU62 Scgb1b3-201ENSMUST00000179481 419 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Smc1aQ9CU62 9330159M07Rik-202ENSMUST00000180783 1044 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Smc1aQ9CU62 Gm8343-201ENSMUST00000182705 994 ntBASIC12.84□□□□□ -0.35
Smc1aQ9CU62 Gm2965-201ENSMUST00000198365 343 ntBASIC12.84□□□□□ -0.35
Smc1aQ9CU62 4930504D19Rik-201ENSMUST00000204799 349 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Smc1aQ9CU62 Gm45550-201ENSMUST00000209380 946 ntBASIC12.84□□□□□ -0.35
Smc1aQ9CU62 Ccl1-201ENSMUST00000021043 611 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Smc1aQ9CU62 Gm40576-201ENSMUST00000221773 1152 ntTSL 5 BASIC12.84□□□□□ -0.35
Smc1aQ9CU62 Csnk2b-201ENSMUST00000025246 961 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Smc1aQ9CU62 Neil1-201ENSMUST00000034842 1170 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Smc1aQ9CU62 Gm10288-201ENSMUST00000084614 537 ntBASIC12.84□□□□□ -0.35
Smc1aQ9CU62 Nuak2-202ENSMUST00000082125 3107 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Smc1aQ9CU62 Tcf25-202ENSMUST00000108840 2582 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Smc1aQ9CU62 Neu2-206ENSMUST00000166259 1596 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Smc1aQ9CU62 Nudt5-205ENSMUST00000179748 1590 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Smc1aQ9CU62 Ldb3-203ENSMUST00000022330 1586 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Smc1aQ9CU62 Tbl2-204ENSMUST00000153183 7488 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Smc1aQ9CU62 Kyat1-206ENSMUST00000113663 2026 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Smc1aQ9CU62 Dbf4-204ENSMUST00000168500 2000 ntTSL 5 BASIC12.84□□□□□ -0.35
Smc1aQ9CU62 Gm8378-202ENSMUST00000167777 2624 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Smc1aQ9CU62 Gm26642-201ENSMUST00000180981 2782 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Smc1aQ9CU62 Mcm2-201ENSMUST00000058011 3371 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Smc1aQ9CU62 Brd1-202ENSMUST00000109380 3259 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Smc1aQ9CU62 Wdr36-201ENSMUST00000053663 3281 ntAPPRIS P4 TSL 1 (best) BASIC12.84□□□□□ -0.35
Smc1aQ9CU62 Gm14698-201ENSMUST00000096420 4226 ntAPPRIS P1 BASIC12.83□□□□□ -0.35
Smc1aQ9CU62 Flicr-201ENSMUST00000144719 3455 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
Smc1aQ9CU62 Ttc30a2-201ENSMUST00000099995 2431 ntAPPRIS P1 BASIC12.83□□□□□ -0.35
Smc1aQ9CU62 Lrrfip2-213ENSMUST00000216430 1525 ntTSL 5 BASIC12.83□□□□□ -0.35
Smc1aQ9CU62 Rbm8a-203ENSMUST00000198027 2757 ntTSL 3 BASIC12.83□□□□□ -0.36
Smc1aQ9CU62 Ncapd2-201ENSMUST00000043848 4629 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Smc1aQ9CU62 Vps54-201ENSMUST00000006221 4323 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Smc1aQ9CU62 Etv1-211ENSMUST00000162563 1865 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
Smc1aQ9CU62 Cd72-205ENSMUST00000107926 1419 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Smc1aQ9CU62 Cd72-203ENSMUST00000098105 1420 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 44.6 ms