Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Glis3-209ENSMUST00000162022 7514 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sf3b1Q99NB9 Grm1-203ENSMUST00000105561 4435 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sf3b1Q99NB9 Adgre5-208ENSMUST00000166939 2980 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Sf3b1Q99NB9 Adgre5-201ENSMUST00000002964 2986 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Sf3b1Q99NB9 Mier1-205ENSMUST00000106858 4830 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sf3b1Q99NB9 Ttbk2-202ENSMUST00000057135 11066 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sf3b1Q99NB9 Gm3765-201ENSMUST00000130985 1447 ntBASIC12.16□□□□□ -0.46
Sf3b1Q99NB9 Fam78a-201ENSMUST00000056406 4107 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sf3b1Q99NB9 Sgca-202ENSMUST00000103162 1724 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
Sf3b1Q99NB9 Camsap3-205ENSMUST00000207432 3865 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sf3b1Q99NB9 Tcim-201ENSMUST00000052622 1805 ntAPPRIS P1 BASIC12.15□□□□□ -0.46
Sf3b1Q99NB9 Gstcd-201ENSMUST00000029651 3503 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sf3b1Q99NB9 Pttg1-203ENSMUST00000101340 700 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Sf3b1Q99NB9 Ralyl-202ENSMUST00000108373 267 ntTSL 5 BASIC12.15□□□□□ -0.46
Sf3b1Q99NB9 Rs1-202ENSMUST00000112368 731 ntTSL 3 BASIC12.15□□□□□ -0.46
Sf3b1Q99NB9 Cetn2-203ENSMUST00000114551 1286 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sf3b1Q99NB9 Pttg1-205ENSMUST00000118368 696 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Sf3b1Q99NB9 Gm13422-201ENSMUST00000118834 504 ntBASIC12.15□□□□□ -0.46
Sf3b1Q99NB9 Gm12274-201ENSMUST00000120062 385 ntBASIC12.15□□□□□ -0.46
Sf3b1Q99NB9 Mrpl20-206ENSMUST00000185148 494 ntTSL 3 BASIC12.15□□□□□ -0.46
Sf3b1Q99NB9 Gm28836-201ENSMUST00000185842 633 ntTSL 2 BASIC12.15□□□□□ -0.46
Sf3b1Q99NB9 4930477O15Rik-201ENSMUST00000196484 1089 ntBASIC12.15□□□□□ -0.46
Sf3b1Q99NB9 Gm42816-201ENSMUST00000198433 325 ntBASIC12.15□□□□□ -0.46
Sf3b1Q99NB9 Gm45120-201ENSMUST00000208880 408 ntBASIC12.15□□□□□ -0.46
Sf3b1Q99NB9 Gm8436-201ENSMUST00000210152 1080 ntBASIC12.15□□□□□ -0.46
Sf3b1Q99NB9 Gm45338-204ENSMUST00000210658 1105 ntTSL 5 BASIC12.15□□□□□ -0.46
Sf3b1Q99NB9 Gm5749-201ENSMUST00000210673 1090 ntBASIC12.15□□□□□ -0.46
Sf3b1Q99NB9 Gm45717-201ENSMUST00000211129 495 ntAPPRIS P1 TSL 3 BASIC12.15□□□□□ -0.46
Sf3b1Q99NB9 Gm45758-201ENSMUST00000212448 1006 ntBASIC12.15□□□□□ -0.46
Sf3b1Q99NB9 AC154826.1-201ENSMUST00000217369 498 ntTSL 5 BASIC12.15□□□□□ -0.46
Sf3b1Q99NB9 Gm3619-201ENSMUST00000219947 775 ntBASIC12.15□□□□□ -0.46
Sf3b1Q99NB9 Mgp-201ENSMUST00000032342 617 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sf3b1Q99NB9 Rpp38-201ENSMUST00000062672 1042 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sf3b1Q99NB9 Gatad2a-201ENSMUST00000065169 3812 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sf3b1Q99NB9 Chmp3-202ENSMUST00000065364 998 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sf3b1Q99NB9 Gm2174-201ENSMUST00000079663 402 ntAPPRIS P1 BASIC12.15□□□□□ -0.46
Sf3b1Q99NB9 Pafah2-201ENSMUST00000105869 2248 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sf3b1Q99NB9 Hyal3-202ENSMUST00000148440 1380 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Sf3b1Q99NB9 Katnal2-207ENSMUST00000137354 1482 ntTSL 5 BASIC12.15□□□□□ -0.46
Sf3b1Q99NB9 Sp4-201ENSMUST00000026367 5694 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sf3b1Q99NB9 Hdac5-204ENSMUST00000107152 3788 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sf3b1Q99NB9 Gm10851-201ENSMUST00000192087 1685 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Sf3b1Q99NB9 Col15a1-203ENSMUST00000107730 1755 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Sf3b1Q99NB9 Fcrl1-203ENSMUST00000167200 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sf3b1Q99NB9 Hoxa9-201ENSMUST00000048680 3226 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sf3b1Q99NB9 Prps1-201ENSMUST00000033809 1965 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sf3b1Q99NB9 Esrp1-201ENSMUST00000043781 3743 ntTSL 5 BASIC12.15□□□□□ -0.46
Sf3b1Q99NB9 A430057M04Rik-201ENSMUST00000169054 3835 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Sf3b1Q99NB9 Prr12-201ENSMUST00000057293 7023 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Sf3b1Q99NB9 Pcdhb21-201ENSMUST00000061405 4705 ntAPPRIS P1 BASIC12.15□□□□□ -0.46
Sf3b1Q99NB9 Zfp467-204ENSMUST00000114559 3163 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Sf3b1Q99NB9 Gm16237-201ENSMUST00000156666 1319 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Sf3b1Q99NB9 Foxh1-201ENSMUST00000037824 1306 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sf3b1Q99NB9 Gm44190-201ENSMUST00000205083 1401 ntBASIC12.15□□□□□ -0.46
Sf3b1Q99NB9 Pdlim2-201ENSMUST00000022681 1523 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sf3b1Q99NB9 Zc3hc1-201ENSMUST00000080812 1824 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sf3b1Q99NB9 Lrmp-201ENSMUST00000032396 2319 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sf3b1Q99NB9 Apbb1-201ENSMUST00000081165 2530 ntAPPRIS ALT1 TSL 5 BASIC12.15□□□□□ -0.46
Sf3b1Q99NB9 Tuft1-201ENSMUST00000006123 2631 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sf3b1Q99NB9 Rasgrp4-205ENSMUST00000159975 2296 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Sf3b1Q99NB9 6820426E19Rik-201ENSMUST00000204274 1970 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Sf3b1Q99NB9 Gm18986-201ENSMUST00000216029 1986 ntBASIC12.14□□□□□ -0.47
Sf3b1Q99NB9 Rbm4b-201ENSMUST00000036744 1783 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sf3b1Q99NB9 Selenot-ps-201ENSMUST00000119098 593 ntBASIC12.14□□□□□ -0.47
Sf3b1Q99NB9 Gm13117-201ENSMUST00000120894 691 ntBASIC12.14□□□□□ -0.47
Sf3b1Q99NB9 Gm10169-201ENSMUST00000121822 348 ntBASIC12.14□□□□□ -0.47
Sf3b1Q99NB9 Gm12030-201ENSMUST00000121917 223 ntBASIC12.14□□□□□ -0.47
Sf3b1Q99NB9 Gm12628-201ENSMUST00000122193 382 ntBASIC12.14□□□□□ -0.47
Sf3b1Q99NB9 Gm38389-201ENSMUST00000147871 653 ntTSL 3 BASIC12.14□□□□□ -0.47
Sf3b1Q99NB9 Gm25492-201ENSMUST00000157383 129 ntBASIC12.14□□□□□ -0.47
Sf3b1Q99NB9 Olfr755-ps1-201ENSMUST00000173568 910 ntBASIC12.14□□□□□ -0.47
Sf3b1Q99NB9 Gm7972-202ENSMUST00000208453 505 ntTSL 3 BASIC12.14□□□□□ -0.47
Sf3b1Q99NB9 Gm4065-202ENSMUST00000218911 986 ntTSL 3 BASIC12.14□□□□□ -0.47
Sf3b1Q99NB9 CT010506.1-201ENSMUST00000223673 349 ntBASIC12.14□□□□□ -0.47
Sf3b1Q99NB9 CT009527.1-201ENSMUST00000224205 339 ntBASIC12.14□□□□□ -0.47
Sf3b1Q99NB9 Cysrt1-201ENSMUST00000043379 873 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sf3b1Q99NB9 Rpl3l-201ENSMUST00000045186 1033 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Sf3b1Q99NB9 Snu13-202ENSMUST00000080622 1283 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sf3b1Q99NB9 Uba52-201ENSMUST00000081940 541 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
Sf3b1Q99NB9 Pabpc4-204ENSMUST00000106243 3111 ntAPPRIS ALT1 TSL 5 BASIC12.14□□□□□ -0.47
Sf3b1Q99NB9 Dlk1-201ENSMUST00000056110 4653 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sf3b1Q99NB9 Dysf-212ENSMUST00000203695 6504 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Sf3b1Q99NB9 Clec16a-203ENSMUST00000115823 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sf3b1Q99NB9 Plscr1-201ENSMUST00000093801 2302 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sf3b1Q99NB9 Fen1-202ENSMUST00000116542 2100 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sf3b1Q99NB9 Mon1b-202ENSMUST00000179926 3470 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sf3b1Q99NB9 Fam3a-201ENSMUST00000015427 1427 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Sf3b1Q99NB9 Rabggtb-202ENSMUST00000167111 1418 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Sf3b1Q99NB9 Clec4a3-201ENSMUST00000088468 1300 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sf3b1Q99NB9 Pcsk7-209ENSMUST00000216672 3599 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sf3b1Q99NB9 Parvg-201ENSMUST00000023074 2619 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sf3b1Q99NB9 Dach2-201ENSMUST00000067219 2520 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sf3b1Q99NB9 Map7d2-202ENSMUST00000112470 1350 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Sf3b1Q99NB9 Grip2-201ENSMUST00000159684 3006 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Sf3b1Q99NB9 Sparc-207ENSMUST00000213866 1366 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Sf3b1Q99NB9 Pnpla6-202ENSMUST00000111070 4496 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
Sf3b1Q99NB9 Zfp280d-205ENSMUST00000183468 1834 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Sf3b1Q99NB9 Gm25880-201ENSMUST00000104331 132 ntBASIC12.13□□□□□ -0.47
Sf3b1Q99NB9 0610010K14Rik-206ENSMUST00000108576 576 ntAPPRIS ALT1 TSL 2 BASIC12.13□□□□□ -0.47
Sf3b1Q99NB9 Cd27-202ENSMUST00000112281 832 ntTSL 3 BASIC12.13□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 50.4 ms