Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Grin1-208ENSMUST00000114318 3920 ntTSL 5 BASIC12.25□□□□□ -0.45
Upf3bQ3ULL6 Gm5136-201ENSMUST00000218023 1397 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
Upf3bQ3ULL6 Rab14-202ENSMUST00000113025 4346 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3bQ3ULL6 Plod3-201ENSMUST00000004968 3280 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3bQ3ULL6 Olfr140-202ENSMUST00000111506 3449 ntAPPRIS P1 TSL 2 BASIC12.25□□□□□ -0.45
Upf3bQ3ULL6 Neu2-207ENSMUST00000172222 1715 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3bQ3ULL6 Stxbp5l-204ENSMUST00000114781 3544 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Upf3bQ3ULL6 Auts2-209ENSMUST00000161804 5392 ntAPPRIS P5 TSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3bQ3ULL6 Hyal3-201ENSMUST00000040059 1830 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3bQ3ULL6 Gm21319-201ENSMUST00000164517 1863 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3bQ3ULL6 Slc6a1-201ENSMUST00000032454 4302 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3bQ3ULL6 Cntnap4-201ENSMUST00000034225 4848 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3bQ3ULL6 Il2rb-201ENSMUST00000089398 2692 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Upf3bQ3ULL6 Pkn1-208ENSMUST00000144258 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Upf3bQ3ULL6 Dglucy-202ENSMUST00000110069 3058 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Upf3bQ3ULL6 Rbm14-202ENSMUST00000113793 3508 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Upf3bQ3ULL6 Zfp46-201ENSMUST00000069195 4639 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Upf3bQ3ULL6 Cep128-210ENSMUST00000141429 4807 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Upf3bQ3ULL6 Ankrd60-201ENSMUST00000109112 833 ntAPPRIS ALT2 TSL 3 BASIC12.24□□□□□ -0.45
Upf3bQ3ULL6 Nrros-202ENSMUST00000115163 3559 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Upf3bQ3ULL6 Gm15573-201ENSMUST00000119487 540 ntBASIC12.24□□□□□ -0.45
Upf3bQ3ULL6 Gm13408-201ENSMUST00000119822 798 ntBASIC12.24□□□□□ -0.45
Upf3bQ3ULL6 Gm13935-201ENSMUST00000121859 798 ntBASIC12.24□□□□□ -0.45
Upf3bQ3ULL6 A130010J15Rik-204ENSMUST00000161235 2097 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Upf3bQ3ULL6 Gm17231-202ENSMUST00000165858 663 ntTSL 5 BASIC12.24□□□□□ -0.45
Upf3bQ3ULL6 Tmem255b-202ENSMUST00000167505 1219 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Upf3bQ3ULL6 Neat1-202ENSMUST00000174287 3004 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Upf3bQ3ULL6 Gm807-201ENSMUST00000181742 1723 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Upf3bQ3ULL6 Gm4654-201ENSMUST00000183305 982 ntBASIC12.24□□□□□ -0.45
Upf3bQ3ULL6 Gm37600-201ENSMUST00000193764 3292 ntBASIC12.24□□□□□ -0.45
Upf3bQ3ULL6 Gm37933-201ENSMUST00000193964 981 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Upf3bQ3ULL6 Gm18753-201ENSMUST00000201000 566 ntBASIC12.24□□□□□ -0.45
Upf3bQ3ULL6 Gm10318-202ENSMUST00000217996 639 ntTSL 5 BASIC12.24□□□□□ -0.45
Upf3bQ3ULL6 Susd3-201ENSMUST00000021816 1317 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Upf3bQ3ULL6 Nsd1-205ENSMUST00000224693 852 ntBASIC12.24□□□□□ -0.45
Upf3bQ3ULL6 Gusb-201ENSMUST00000026613 2687 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Upf3bQ3ULL6 Cln3-201ENSMUST00000032962 2386 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Upf3bQ3ULL6 Rsl24d1-201ENSMUST00000034738 1543 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Upf3bQ3ULL6 Mlc1-201ENSMUST00000042594 2783 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Upf3bQ3ULL6 Tex2-201ENSMUST00000042780 4934 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Upf3bQ3ULL6 Krtap19-5-201ENSMUST00000053460 483 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
Upf3bQ3ULL6 Slc45a4-201ENSMUST00000054266 4664 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
Upf3bQ3ULL6 Zfp68-201ENSMUST00000063262 2254 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Upf3bQ3ULL6 Vill-202ENSMUST00000074734 2440 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Upf3bQ3ULL6 Rad51c-201ENSMUST00000007790 1632 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Upf3bQ3ULL6 Clec4b1-202ENSMUST00000078559 748 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Upf3bQ3ULL6 Rnf183-201ENSMUST00000079420 573 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
Upf3bQ3ULL6 Olfr411-201ENSMUST00000080365 1049 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
Upf3bQ3ULL6 Cd163l1-201ENSMUST00000084460 3454 ntAPPRIS P2 TSL 5 BASIC12.24□□□□□ -0.45
Upf3bQ3ULL6 Myo18a-205ENSMUST00000100794 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Upf3bQ3ULL6 Smarca2-216ENSMUST00000176769 5703 ntTSL 5 BASIC12.24□□□□□ -0.45
Upf3bQ3ULL6 Myo1b-201ENSMUST00000018561 4767 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Upf3bQ3ULL6 Grm5-201ENSMUST00000107263 3516 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Upf3bQ3ULL6 Aff3-203ENSMUST00000095027 5857 ntAPPRIS P2 TSL 5 BASIC12.24□□□□□ -0.45
Upf3bQ3ULL6 Phyhipl-201ENSMUST00000046513 2877 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Upf3bQ3ULL6 Coro6-204ENSMUST00000102493 2804 ntAPPRIS ALT1 TSL 5 BASIC12.24□□□□□ -0.45
Upf3bQ3ULL6 Gm10419-202ENSMUST00000196693 2530 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Upf3bQ3ULL6 Dach2-201ENSMUST00000067219 2520 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Upf3bQ3ULL6 B230317F23Rik-201ENSMUST00000052189 2472 ntBASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 Igsf3-201ENSMUST00000043983 7371 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 Mrpl45-201ENSMUST00000019026 2431 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 Aicda-201ENSMUST00000043301 2405 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 Pafah1b2-201ENSMUST00000172450 6873 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 4921522P10Rik-201ENSMUST00000048606 2101 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 6030407O03Rik-201ENSMUST00000189514 2094 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 Zmiz2-205ENSMUST00000109787 4116 ntAPPRIS P2 TSL 5 BASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 Exd1-201ENSMUST00000060009 6042 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 Tpd52l2-202ENSMUST00000069712 1799 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 Nme1-203ENSMUST00000135884 3181 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 Ush1c-201ENSMUST00000009667 3072 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 4930431P19Rik-202ENSMUST00000207761 2959 ntBASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 Mfsd4b5-202ENSMUST00000073618 2978 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 Adcyap1r1-204ENSMUST00000165857 1491 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 Clec10a-201ENSMUST00000000327 1454 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 Olfr1419-202ENSMUST00000213954 2918 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 Gm18642-201ENSMUST00000206642 1400 ntBASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 Slc46a2-201ENSMUST00000030081 2833 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 Klhl14-201ENSMUST00000049105 4018 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 Slc26a11-201ENSMUST00000050880 2695 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 Gm21998-201ENSMUST00000117552 1308 ntBASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 Wbp1l-201ENSMUST00000099376 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 Gm11244-201ENSMUST00000121243 237 ntBASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 Gm14397-201ENSMUST00000124728 576 ntTSL 3 BASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 Gm13115-201ENSMUST00000156438 620 ntTSL 5 BASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 Krtap20-2-201ENSMUST00000169954 528 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 1700029J03Rik-201ENSMUST00000185803 789 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 BC026585-203ENSMUST00000193791 778 ntTSL 2 BASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 1700003I16Rik-201ENSMUST00000205198 1058 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 Gm17831-201ENSMUST00000205579 900 ntBASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 Pgpep1l-202ENSMUST00000207874 677 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 Gm18393-201ENSMUST00000208349 1131 ntBASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 Gm6722-201ENSMUST00000221586 390 ntBASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 Olfr584-201ENSMUST00000098210 964 ntBASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 Foxn2-201ENSMUST00000112238 5085 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 Gmeb1-201ENSMUST00000030733 2485 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 Chd3-202ENSMUST00000108661 7261 ntAPPRIS P2 TSL 5 BASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 Zfp41-204ENSMUST00000161785 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 Gabrr1-201ENSMUST00000029947 2286 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 Nacc2-202ENSMUST00000114159 6675 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Upf3bQ3ULL6 Usp22-201ENSMUST00000041683 4434 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 37.5 ms