Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Fut10-202ENSMUST00000110527 2327 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Col28a1Q2UY11 Cdadc1-208ENSMUST00000225839 3189 ntAPPRIS ALT2 BASIC11.13□□□□□ -0.63
Col28a1Q2UY11 CT025681.1-201ENSMUST00000225453 1855 ntBASIC11.13□□□□□ -0.63
Col28a1Q2UY11 Fastkd5-201ENSMUST00000110262 3015 ntAPPRIS P1 TSL 2 BASIC11.13□□□□□ -0.63
Col28a1Q2UY11 Chit1-203ENSMUST00000160060 1580 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Col28a1Q2UY11 Gm5847-201ENSMUST00000178959 1595 ntBASIC11.13□□□□□ -0.63
Col28a1Q2UY11 Cela2a-201ENSMUST00000102481 1070 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Col28a1Q2UY11 Fgf8-204ENSMUST00000111925 702 ntTSL 5 BASIC11.13□□□□□ -0.63
Col28a1Q2UY11 Rap1a-ps2-201ENSMUST00000118467 559 ntBASIC11.13□□□□□ -0.63
Col28a1Q2UY11 Gm14235-201ENSMUST00000142445 366 ntTSL 3 BASIC11.13□□□□□ -0.63
Col28a1Q2UY11 Gm24845-201ENSMUST00000158034 109 ntBASIC11.13□□□□□ -0.63
Col28a1Q2UY11 Gm45021-201ENSMUST00000204521 369 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
Col28a1Q2UY11 Hcst-203ENSMUST00000208740 366 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Col28a1Q2UY11 1700008C04Rik-201ENSMUST00000218606 797 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Col28a1Q2UY11 CT009718.3-201ENSMUST00000221116 367 ntBASIC11.13□□□□□ -0.63
Col28a1Q2UY11 AC163667.3-201ENSMUST00000225774 222 ntBASIC11.13□□□□□ -0.63
Col28a1Q2UY11 Cysrt1-201ENSMUST00000043379 873 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Col28a1Q2UY11 Mrpl18-201ENSMUST00000079121 1219 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Col28a1Q2UY11 Col20a1-201ENSMUST00000108856 4489 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
Col28a1Q2UY11 6030443J06Rik-201ENSMUST00000181209 2380 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Col28a1Q2UY11 Mpv17-202ENSMUST00000200744 1653 ntTSL 2 BASIC11.13□□□□□ -0.63
Col28a1Q2UY11 Actl7a-201ENSMUST00000095079 1513 ntAPPRIS P1 BASIC11.13□□□□□ -0.63
Col28a1Q2UY11 Tuft1-201ENSMUST00000006123 2631 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
Col28a1Q2UY11 Taok1-202ENSMUST00000058496 12409 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Col28a1Q2UY11 Gabrr2-202ENSMUST00000108162 1933 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Col28a1Q2UY11 Idi1-201ENSMUST00000169314 3027 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Col28a1Q2UY11 Dscaml1-201ENSMUST00000034592 6886 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Col28a1Q2UY11 Eno1-201ENSMUST00000080149 1902 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Col28a1Q2UY11 Gtf3c1-204ENSMUST00000205659 6570 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
Col28a1Q2UY11 Serpina1b-202ENSMUST00000164454 1760 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Col28a1Q2UY11 AC126444.1-201ENSMUST00000225938 1768 ntBASIC11.13□□□□□ -0.63
Col28a1Q2UY11 Pip5k1b-201ENSMUST00000025800 2573 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Col28a1Q2UY11 Lgals12-201ENSMUST00000079902 2590 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Col28a1Q2UY11 Alas2-202ENSMUST00000112715 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Col28a1Q2UY11 AC166359.1-201ENSMUST00000220243 1871 ntBASIC11.12□□□□□ -0.63
Col28a1Q2UY11 Cd55-201ENSMUST00000027650 2533 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Col28a1Q2UY11 Traf3ip3-201ENSMUST00000043550 2122 ntAPPRIS P2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Col28a1Q2UY11 Prdm5-204ENSMUST00000172638 1714 ntTSL 5 BASIC11.12□□□□□ -0.63
Col28a1Q2UY11 AC079680.2-201ENSMUST00000219181 1306 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Col28a1Q2UY11 Gm43127-201ENSMUST00000195890 2789 ntBASIC11.12□□□□□ -0.63
Col28a1Q2UY11 Lepr-203ENSMUST00000106921 5542 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Col28a1Q2UY11 Tyw1-201ENSMUST00000040213 3044 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Col28a1Q2UY11 Tiam1-203ENSMUST00000114122 4596 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Col28a1Q2UY11 Smim1-214ENSMUST00000182191 3535 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Col28a1Q2UY11 Znrf3-203ENSMUST00000172492 4926 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Col28a1Q2UY11 Tcn2-203ENSMUST00000109989 1949 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Col28a1Q2UY11 Bnip3l-ps-201ENSMUST00000101577 657 ntBASIC11.12□□□□□ -0.63
Col28a1Q2UY11 Arpc3-202ENSMUST00000102525 899 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Col28a1Q2UY11 Pla2g10-202ENSMUST00000115807 964 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Col28a1Q2UY11 Gm20537-202ENSMUST00000173131 889 ntAPPRIS P5 TSL 5 BASIC11.12□□□□□ -0.63
Col28a1Q2UY11 Vmn1r205-201ENSMUST00000185475 951 ntAPPRIS P1 BASIC11.12□□□□□ -0.63
Col28a1Q2UY11 Gm28172-201ENSMUST00000189880 506 ntTSL 3 BASIC11.12□□□□□ -0.63
Col28a1Q2UY11 Calml4-207ENSMUST00000215968 526 ntTSL 2 BASIC11.12□□□□□ -0.63
Col28a1Q2UY11 Bnip3l-ps-202ENSMUST00000220709 1132 ntBASIC11.12□□□□□ -0.63
Col28a1Q2UY11 Olfr450-201ENSMUST00000067503 933 ntAPPRIS P1 BASIC11.12□□□□□ -0.63
Col28a1Q2UY11 Rpl18-201ENSMUST00000072503 679 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Col28a1Q2UY11 Gtf2i-224ENSMUST00000174772 4078 ntAPPRIS ALT2 TSL 2 BASIC11.12□□□□□ -0.63
Col28a1Q2UY11 Cdc42ep4-202ENSMUST00000106616 3405 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Col28a1Q2UY11 Vipr2-201ENSMUST00000011315 3383 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Col28a1Q2UY11 Dhdds-201ENSMUST00000012262 3133 ntAPPRIS P2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Col28a1Q2UY11 Cacna1s-204ENSMUST00000160641 6104 ntAPPRIS ALT2 TSL 5 BASIC11.12□□□□□ -0.63
Col28a1Q2UY11 Batf2-201ENSMUST00000045042 1391 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Col28a1Q2UY11 Pbx1-208ENSMUST00000188912 3970 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Col28a1Q2UY11 Calcoco1-204ENSMUST00000171838 2968 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Col28a1Q2UY11 Slc30a8-201ENSMUST00000037240 1971 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Col28a1Q2UY11 Adgrv1-214ENSMUST00000224088 1492 ntBASIC11.12□□□□□ -0.63
Col28a1Q2UY11 Izumo1-201ENSMUST00000033100 1493 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Col28a1Q2UY11 Sugp1-201ENSMUST00000011450 2681 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Col28a1Q2UY11 Kng2-203ENSMUST00000115349 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col28a1Q2UY11 AC125409.1-201ENSMUST00000223213 3370 ntBASIC11.11□□□□□ -0.63
Col28a1Q2UY11 Folr1-203ENSMUST00000106983 1307 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
Col28a1Q2UY11 Zfp420-202ENSMUST00000074876 2537 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col28a1Q2UY11 Gm26714-201ENSMUST00000181338 1655 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Col28a1Q2UY11 Pigb-206ENSMUST00000184035 3221 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col28a1Q2UY11 Mybpc3-203ENSMUST00000169776 4163 ntAPPRIS P2 TSL 5 BASIC11.11□□□□□ -0.63
Col28a1Q2UY11 Zbtb45-205ENSMUST00000210282 3908 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col28a1Q2UY11 Dctn1-205ENSMUST00000113919 4292 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col28a1Q2UY11 BC004004-203ENSMUST00000149405 1402 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
Col28a1Q2UY11 Cdh20-201ENSMUST00000062528 4012 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col28a1Q2UY11 Slc43a1-204ENSMUST00000121114 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col28a1Q2UY11 Kcnma1-205ENSMUST00000145596 12094 ntAPPRIS ALT2 BASIC11.11□□□□□ -0.63
Col28a1Q2UY11 Snw1-201ENSMUST00000021428 2232 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col28a1Q2UY11 Zcwpw1-201ENSMUST00000035852 2222 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col28a1Q2UY11 Nexmif-203ENSMUST00000118314 11476 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col28a1Q2UY11 Ppp2r1b-201ENSMUST00000034560 3647 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Col28a1Q2UY11 Tcf7l2-205ENSMUST00000111651 1127 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Col28a1Q2UY11 Gm16066-201ENSMUST00000118575 1086 ntTSL 3 BASIC11.11□□□□□ -0.63
Col28a1Q2UY11 Gsto2-202ENSMUST00000120645 1277 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col28a1Q2UY11 Gm43966-201ENSMUST00000203301 612 ntBASIC11.11□□□□□ -0.63
Col28a1Q2UY11 0610033M10Rik-201ENSMUST00000204546 506 ntTSL 5 BASIC11.11□□□□□ -0.63
Col28a1Q2UY11 Gm44651-201ENSMUST00000207343 372 ntBASIC11.11□□□□□ -0.63
Col28a1Q2UY11 Gm45224-201ENSMUST00000208203 414 ntBASIC11.11□□□□□ -0.63
Col28a1Q2UY11 Gm33104-201ENSMUST00000214178 1010 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Col28a1Q2UY11 Gm32141-201ENSMUST00000220189 488 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Col28a1Q2UY11 AC154252.2-201ENSMUST00000223593 767 ntBASIC11.11□□□□□ -0.63
Col28a1Q2UY11 CT025694.1-201ENSMUST00000226188 934 ntBASIC11.11□□□□□ -0.63
Col28a1Q2UY11 Elovl1-202ENSMUST00000067896 1137 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col28a1Q2UY11 Pyurf-201ENSMUST00000053386 3573 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col28a1Q2UY11 Vtn-201ENSMUST00000017488 1744 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col28a1Q2UY11 Slc6a21-201ENSMUST00000085364 1732 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Retrieved 100 of 76,532 protein–RNA pairs in 55.6 ms