Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Camk2g-203ENSMUST00000100837 3564 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Cux1P53564 2810430I11Rik-201ENSMUST00000154246 3416 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Cux1P53564 Tfb2m-201ENSMUST00000027769 2449 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Cux1P53564 Gm9917-201ENSMUST00000180865 5192 ntTSL 3 BASIC17.33■□□□□ 0.37
Cux1P53564 Gm14052-201ENSMUST00000121434 1031 ntBASIC17.33■□□□□ 0.37
Cux1P53564 Gm13817-201ENSMUST00000142249 604 ntTSL 3 BASIC17.33■□□□□ 0.37
Cux1P53564 Gm13449-201ENSMUST00000153559 1231 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Cux1P53564 Tnnt1-206ENSMUST00000163710 885 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Cux1P53564 Gm43275-201ENSMUST00000202053 1020 ntBASIC17.33■□□□□ 0.37
Cux1P53564 Gm6794-201ENSMUST00000203829 457 ntBASIC17.33■□□□□ 0.37
Cux1P53564 E230034D01Rik-203ENSMUST00000217357 1159 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Cux1P53564 B230303A05Rik-204ENSMUST00000223006 748 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Cux1P53564 Ebi3-201ENSMUST00000003274 1170 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Cux1P53564 Paqr8-203ENSMUST00000187651 1463 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
Cux1P53564 Alg13-202ENSMUST00000070801 1802 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Cux1P53564 Stim1-209ENSMUST00000211457 2183 ntTSL 5 BASIC17.33■□□□□ 0.36
Cux1P53564 Gm45902-202ENSMUST00000140494 2390 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
Cux1P53564 Ighg2b-202ENSMUST00000192188 2566 ntAPPRIS P5 BASIC17.33■□□□□ 0.36
Cux1P53564 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
Cux1P53564 Gm44913-201ENSMUST00000208060 2990 ntBASIC17.33■□□□□ 0.36
Cux1P53564 Axin2-201ENSMUST00000052915 4260 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Cux1P53564 Suox-201ENSMUST00000054764 2497 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Cux1P53564 Enpp7-201ENSMUST00000092373 1370 ntAPPRIS P2 TSL 2 BASIC17.33■□□□□ 0.36
Cux1P53564 Rspo3-201ENSMUST00000092623 3085 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Cux1P53564 Igf2-201ENSMUST00000000033 3708 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Cux1P53564 Eif4a2-223ENSMUST00000168891 2203 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Cux1P53564 Olfr322-204ENSMUST00000214392 4779 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Cux1P53564 Bcl2l11-204ENSMUST00000103211 672 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
Cux1P53564 Gm12947-201ENSMUST00000116114 420 ntBASIC17.32■□□□□ 0.36
Cux1P53564 Gm13171-201ENSMUST00000117233 391 ntBASIC17.32■□□□□ 0.36
Cux1P53564 Gm12000-201ENSMUST00000132007 629 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Cux1P53564 Gm12056-201ENSMUST00000148364 1257 ntTSL 5 BASIC17.32■□□□□ 0.36
Cux1P53564 Gm26313-201ENSMUST00000157770 308 ntBASIC17.32■□□□□ 0.36
Cux1P53564 Gm40414-201ENSMUST00000197608 481 ntBASIC17.32■□□□□ 0.36
Cux1P53564 Gm42689-201ENSMUST00000202403 404 ntBASIC17.32■□□□□ 0.36
Cux1P53564 Gm32591-203ENSMUST00000204725 696 ntTSL 3 BASIC17.32■□□□□ 0.36
Cux1P53564 Gm39091-201ENSMUST00000206189 553 ntTSL 2 BASIC17.32■□□□□ 0.36
Cux1P53564 AC163703.1-201ENSMUST00000214133 339 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
Cux1P53564 AC154407.1-201ENSMUST00000226777 526 ntBASIC17.32■□□□□ 0.36
Cux1P53564 Lsm3-201ENSMUST00000040607 743 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Cux1P53564 Olfr115-201ENSMUST00000076936 939 ntAPPRIS P2 BASIC17.32■□□□□ 0.36
Cux1P53564 Gm6478-201ENSMUST00000099450 742 ntBASIC17.32■□□□□ 0.36
Cux1P53564 C130083M11Rik-201ENSMUST00000197171 2072 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Cux1P53564 Slc10a1-202ENSMUST00000218162 1749 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Cux1P53564 Aldoa-202ENSMUST00000087566 1549 ntTSL 5 BASIC17.32■□□□□ 0.36
Cux1P53564 Gm42890-202ENSMUST00000167642 2566 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Cux1P53564 Pcnx3-201ENSMUST00000068169 5276 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Cux1P53564 Kcnn2-201ENSMUST00000066890 3682 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Cux1P53564 Atp6v0a1-210ENSMUST00000168757 3967 ntAPPRIS ALT1 TSL 5 BASIC17.32■□□□□ 0.36
Cux1P53564 9330162012Rik-201ENSMUST00000154919 3836 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Cux1P53564 Tex10-206ENSMUST00000164866 3203 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Cux1P53564 Gm37160-201ENSMUST00000193081 1689 ntBASIC17.32■□□□□ 0.36
Cux1P53564 Gpr155-202ENSMUST00000076463 5061 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Cux1P53564 St6galnac4-204ENSMUST00000179989 2826 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Cux1P53564 Eif3d-201ENSMUST00000100484 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Cux1P53564 Vmn1r24-201ENSMUST00000228097 1901 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Cux1P53564 Mrc2-201ENSMUST00000021038 3335 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Cux1P53564 4930579F01Rik-201ENSMUST00000012186 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Cux1P53564 Gm23255-201ENSMUST00000102244 110 ntBASIC17.31■□□□□ 0.36
Cux1P53564 Krt40-202ENSMUST00000107443 1080 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Cux1P53564 AU015836-201ENSMUST00000120624 674 ntTSL 3 BASIC17.31■□□□□ 0.36
Cux1P53564 Ppy-202ENSMUST00000170554 487 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Cux1P53564 Pax5-212ENSMUST00000173733 885 ntTSL 5 BASIC17.31■□□□□ 0.36
Cux1P53564 Gm45680-201ENSMUST00000211135 214 ntTSL 3 BASIC17.31■□□□□ 0.36
Cux1P53564 AC121567.1-201ENSMUST00000227213 842 ntBASIC17.31■□□□□ 0.36
Cux1P53564 Ccl27a-201ENSMUST00000074387 405 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Cux1P53564 Tex101-201ENSMUST00000078001 1059 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Cux1P53564 Cep68-201ENSMUST00000050611 4804 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Cux1P53564 Cpeb1-209ENSMUST00000178892 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Cux1P53564 Adgrb2-202ENSMUST00000097868 4635 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Cux1P53564 Rgs6-208ENSMUST00000186458 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Cux1P53564 Chrna10-201ENSMUST00000084830 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Cux1P53564 Gm31816-202ENSMUST00000209591 1332 ntTSL 5 BASIC17.31■□□□□ 0.36
Cux1P53564 Fbxl12-201ENSMUST00000086458 2056 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Cux1P53564 Cntd1-201ENSMUST00000103107 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Cux1P53564 Cpeb3-210ENSMUST00000136286 5260 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Cux1P53564 Naa50-201ENSMUST00000063520 3557 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Cux1P53564 Nit1-203ENSMUST00000111296 1394 ntTSL 5 BASIC17.31■□□□□ 0.36
Cux1P53564 A730020E08Rik-201ENSMUST00000180421 3387 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Cux1P53564 Gm42432-201ENSMUST00000197902 1617 ntBASIC17.31■□□□□ 0.36
Cux1P53564 Vmn1r45-202ENSMUST00000226167 2893 ntBASIC17.31■□□□□ 0.36
Cux1P53564 Xpc-201ENSMUST00000032182 3634 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Cux1P53564 Wdr31-202ENSMUST00000107452 1437 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Cux1P53564 9130019O22Rik-202ENSMUST00000164345 2735 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Cux1P53564 Col5a3-201ENSMUST00000004201 6119 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Cux1P53564 Olfr1372-ps1-202ENSMUST00000203403 9812 ntTSL 5 BASIC17.31■□□□□ 0.36
Cux1P53564 1110046J04Rik-202ENSMUST00000180906 2776 ntBASIC17.31■□□□□ 0.36
Cux1P53564 Pde4dip-202ENSMUST00000090750 8376 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Cux1P53564 Acnat1-201ENSMUST00000095086 1499 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Cux1P53564 Irak4-201ENSMUST00000074936 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Cux1P53564 Zfp641-201ENSMUST00000023722 4212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Cux1P53564 Ss18l2-206ENSMUST00000215966 2316 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Cux1P53564 Bglap3-203ENSMUST00000107543 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Cux1P53564 Gm5909-201ENSMUST00000119768 1281 ntBASIC17.31■□□□□ 0.36
Cux1P53564 Gm6441-201ENSMUST00000120983 696 ntBASIC17.31■□□□□ 0.36
Cux1P53564 Has2os-202ENSMUST00000163314 633 ntTSL 3 BASIC17.31■□□□□ 0.36
Cux1P53564 AU015836-205ENSMUST00000163458 911 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Cux1P53564 Milr1-206ENSMUST00000182896 918 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Cux1P53564 Milr1-207ENSMUST00000182908 811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Cux1P53564 Ly6e-207ENSMUST00000187606 735 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 1121.1 ms