Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Sstr5-201ENSMUST00000051864 2733 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Col18a1P39061 AC124561.1-202ENSMUST00000228652 1929 ntBASIC14.77□□□□□ -0.05
Col18a1P39061 Cog5-201ENSMUST00000036862 2997 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Col18a1P39061 Git2-202ENSMUST00000086564 2984 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
Col18a1P39061 Aida-201ENSMUST00000109166 4279 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Col18a1P39061 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Col18a1P39061 1700034H15Rik-202ENSMUST00000139827 4354 ntTSL 5 BASIC14.77□□□□□ -0.05
Col18a1P39061 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
Col18a1P39061 Prrt3-202ENSMUST00000204134 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Col18a1P39061 Gm4419-201ENSMUST00000180671 1729 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Col18a1P39061 Fam13c-202ENSMUST00000105436 3380 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
Col18a1P39061 Gm4865-201ENSMUST00000196284 1309 ntBASIC14.76□□□□□ -0.05
Col18a1P39061 9230110C19Rik-201ENSMUST00000065291 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col18a1P39061 Tubd1-201ENSMUST00000020821 2070 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Col18a1P39061 Eya1-202ENSMUST00000080664 3426 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Col18a1P39061 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
Col18a1P39061 Rdh7-201ENSMUST00000047199 1678 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col18a1P39061 Rnf123-214ENSMUST00000162355 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col18a1P39061 Armcx6-201ENSMUST00000052431 2024 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col18a1P39061 Gspt1-205ENSMUST00000167571 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col18a1P39061 Ptp4a3-204ENSMUST00000167582 2640 ntTSL 5 BASIC14.76□□□□□ -0.05
Col18a1P39061 Slc25a21-202ENSMUST00000110680 918 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
Col18a1P39061 Mrps33-202ENSMUST00000114797 500 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Col18a1P39061 Gm12047-201ENSMUST00000117561 944 ntBASIC14.76□□□□□ -0.05
Col18a1P39061 n-R5s154-201ENSMUST00000122513 108 ntBASIC14.76□□□□□ -0.05
Col18a1P39061 Rpl17-ps11-201ENSMUST00000161946 729 ntBASIC14.76□□□□□ -0.05
Col18a1P39061 Gm2021-201ENSMUST00000190623 464 ntBASIC14.76□□□□□ -0.05
Col18a1P39061 Gm43103-201ENSMUST00000199021 802 ntBASIC14.76□□□□□ -0.05
Col18a1P39061 Gm3289-201ENSMUST00000200819 756 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Col18a1P39061 CT025642.1-201ENSMUST00000224734 1219 ntBASIC14.76□□□□□ -0.05
Col18a1P39061 Gm10134-201ENSMUST00000074761 381 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
Col18a1P39061 Oprk1-201ENSMUST00000027038 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col18a1P39061 4931406C07Rik-202ENSMUST00000178977 2650 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col18a1P39061 Rwdd3-204ENSMUST00000106466 1484 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col18a1P39061 Map1lc3b-201ENSMUST00000034270 2532 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col18a1P39061 Slc4a9-202ENSMUST00000115694 2861 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
Col18a1P39061 Trim45-204ENSMUST00000134993 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col18a1P39061 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col18a1P39061 Bgn-207ENSMUST00000169489 1574 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
Col18a1P39061 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col18a1P39061 Snx14-207ENSMUST00000174806 3082 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
Col18a1P39061 Slc4a5-202ENSMUST00000113899 5039 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
Col18a1P39061 Ildr1-201ENSMUST00000023617 3042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col18a1P39061 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col18a1P39061 Lgr5-206ENSMUST00000172806 2652 ntTSL 5 BASIC14.76□□□□□ -0.05
Col18a1P39061 4732414G09Rik-201ENSMUST00000156243 2422 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Col18a1P39061 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col18a1P39061 Gsdmc2-202ENSMUST00000188404 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col18a1P39061 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
Col18a1P39061 Gm22661-201ENSMUST00000104192 132 ntBASIC14.75□□□□□ -0.05
Col18a1P39061 Fhl1-206ENSMUST00000116596 1203 ntTSL 5 BASIC14.75□□□□□ -0.05
Col18a1P39061 Fgf1-203ENSMUST00000117566 418 ntTSL 5 BASIC14.75□□□□□ -0.05
Col18a1P39061 Snrnp27-201ENSMUST00000001186 885 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col18a1P39061 Gm15727-201ENSMUST00000122416 437 ntBASIC14.75□□□□□ -0.05
Col18a1P39061 Gm16280-201ENSMUST00000162458 623 ntTSL 3 BASIC14.75□□□□□ -0.05
Col18a1P39061 Mipep-ps-201ENSMUST00000177439 291 ntBASIC14.75□□□□□ -0.05
Col18a1P39061 Gm9117-201ENSMUST00000177735 1098 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
Col18a1P39061 Gm5627-201ENSMUST00000178539 931 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Col18a1P39061 Gm29200-201ENSMUST00000188118 1085 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Col18a1P39061 Gm18299-201ENSMUST00000192026 636 ntBASIC14.75□□□□□ -0.05
Col18a1P39061 Gm5851-201ENSMUST00000194132 1204 ntBASIC14.75□□□□□ -0.05
Col18a1P39061 Rps27-202ENSMUST00000195998 458 ntTSL 5 BASIC14.75□□□□□ -0.05
Col18a1P39061 Gm7815-201ENSMUST00000196104 832 ntBASIC14.75□□□□□ -0.05
Col18a1P39061 Gm19798-201ENSMUST00000201502 457 ntBASIC14.75□□□□□ -0.05
Col18a1P39061 Prg2-201ENSMUST00000028467 838 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col18a1P39061 Olfr456-201ENSMUST00000057251 1052 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
Col18a1P39061 Smc6-208ENSMUST00000218866 3373 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Col18a1P39061 Acin1-208ENSMUST00000126166 2369 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Col18a1P39061 Acin1-216ENSMUST00000141453 2381 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Col18a1P39061 Chdh-201ENSMUST00000067620 5690 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col18a1P39061 Paqr8-203ENSMUST00000187651 1463 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
Col18a1P39061 Rp2-201ENSMUST00000033372 4417 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col18a1P39061 Mpp1-202ENSMUST00000114091 1558 ntTSL 2 BASIC14.75□□□□□ -0.05
Col18a1P39061 Gm42849-201ENSMUST00000202834 1584 ntTSL 5 BASIC14.75□□□□□ -0.05
Col18a1P39061 Cfap53-201ENSMUST00000114895 1888 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col18a1P39061 Ccdc65-201ENSMUST00000003444 1890 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col18a1P39061 H3f3b-201ENSMUST00000016703 1993 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col18a1P39061 Trim61-201ENSMUST00000078409 1977 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col18a1P39061 Zfp28-201ENSMUST00000081022 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col18a1P39061 Smarca5-ps-201ENSMUST00000121843 3123 ntBASIC14.75□□□□□ -0.05
Col18a1P39061 Dennd2d-201ENSMUST00000029508 4050 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col18a1P39061 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col18a1P39061 Bckdk-201ENSMUST00000071056 3405 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col18a1P39061 Dnmt3b-208ENSMUST00000109772 4015 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col18a1P39061 Gm26546-201ENSMUST00000181000 4276 ntTSL 5 BASIC14.75□□□□□ -0.05
Col18a1P39061 Tnks1bp1-201ENSMUST00000048400 4799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col18a1P39061 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col18a1P39061 Fthl17b-201ENSMUST00000105006 842 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
Col18a1P39061 S100a16-205ENSMUST00000107334 879 ntAPPRIS P1 TSL 3 BASIC14.75□□□□□ -0.05
Col18a1P39061 Gm3404-201ENSMUST00000110596 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col18a1P39061 Gm25804-201ENSMUST00000122785 188 ntBASIC14.75□□□□□ -0.05
Col18a1P39061 Vmn2r-ps13-201ENSMUST00000176920 606 ntBASIC14.75□□□□□ -0.05
Col18a1P39061 Rian-210ENSMUST00000182689 295 ntTSL 5 BASIC14.75□□□□□ -0.05
Col18a1P39061 Gm7812-201ENSMUST00000203479 874 ntBASIC14.75□□□□□ -0.05
Col18a1P39061 Ndufc1-201ENSMUST00000038108 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col18a1P39061 Rps4l-ps-201ENSMUST00000059737 768 ntBASIC14.75□□□□□ -0.05
Col18a1P39061 Gm4763-201ENSMUST00000081657 882 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col18a1P39061 Ttc7-201ENSMUST00000041110 4614 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col18a1P39061 Gad1-ps-201ENSMUST00000167243 1776 ntBASIC14.75□□□□□ -0.05
Col18a1P39061 Prkcsh-202ENSMUST00000115331 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 62.2 ms