Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Sept9-203ENSMUST00000100193 2924 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
RaraP11416 Pigq-219ENSMUST00000208071 2926 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
RaraP11416 Dusp22-202ENSMUST00000095914 3015 ntAPPRIS P4 TSL 1 (best) BASIC12.38□□□□□ -0.43
RaraP11416 Igtp-201ENSMUST00000035266 2022 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
RaraP11416 Gm15622-201ENSMUST00000143025 1464 ntTSL 5 BASIC12.38□□□□□ -0.43
RaraP11416 Irf5-202ENSMUST00000163511 2241 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
RaraP11416 Adamts5-201ENSMUST00000023611 8091 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
RaraP11416 Clvs2-204ENSMUST00000161692 4283 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
RaraP11416 Gm6831-202ENSMUST00000213025 1673 ntBASIC12.38□□□□□ -0.43
RaraP11416 Mfsd7a-201ENSMUST00000031455 2508 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
RaraP11416 Anxa9-202ENSMUST00000107183 1872 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
RaraP11416 Zfat-205ENSMUST00000162173 3561 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
RaraP11416 Atic-201ENSMUST00000027384 2845 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
RaraP11416 Cttn-201ENSMUST00000033407 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
RaraP11416 Adh4-201ENSMUST00000013458 1314 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
RaraP11416 Hdac7-205ENSMUST00000118294 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
RaraP11416 Mcf2l-203ENSMUST00000110866 5108 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
RaraP11416 Pigu-205ENSMUST00000165234 1626 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
RaraP11416 Ccdc62-201ENSMUST00000094320 3924 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
RaraP11416 Tnip1-203ENSMUST00000102731 2973 ntAPPRIS P3 TSL 5 BASIC12.37□□□□□ -0.43
RaraP11416 Ccdc191-201ENSMUST00000122014 1822 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
RaraP11416 Platr6-201ENSMUST00000180731 1818 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
RaraP11416 Krt75-201ENSMUST00000042957 3266 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
RaraP11416 Dsc2-201ENSMUST00000039247 4630 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
RaraP11416 Txlna-202ENSMUST00000084264 4847 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
RaraP11416 Rps6ka1-209ENSMUST00000174481 2228 ntTSL 5 BASIC12.37□□□□□ -0.43
RaraP11416 Zfp420-202ENSMUST00000074876 2537 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
RaraP11416 Ccdc129-201ENSMUST00000044729 3431 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
RaraP11416 Strc-201ENSMUST00000038389 5756 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
RaraP11416 Oxct1-201ENSMUST00000110690 3527 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
RaraP11416 Gm26640-201ENSMUST00000180809 3524 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
RaraP11416 Gm12129-201ENSMUST00000120104 1147 ntBASIC12.37□□□□□ -0.43
RaraP11416 Nfu1-203ENSMUST00000120240 1195 ntAPPRIS P3 TSL 5 BASIC12.37□□□□□ -0.43
RaraP11416 Gm10863-201ENSMUST00000130745 438 ntTSL 3 BASIC12.37□□□□□ -0.43
RaraP11416 Ly6g6e-201ENSMUST00000013910 1142 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
RaraP11416 Gm15979-201ENSMUST00000149741 590 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
RaraP11416 Gm23958-201ENSMUST00000157207 105 ntBASIC12.37□□□□□ -0.43
RaraP11416 Gm454-201ENSMUST00000160126 751 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
RaraP11416 Gm8459-201ENSMUST00000162504 760 ntBASIC12.37□□□□□ -0.43
RaraP11416 Gm10807-201ENSMUST00000177134 795 ntBASIC12.37□□□□□ -0.43
RaraP11416 Gm26542-201ENSMUST00000180443 1235 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
RaraP11416 1700008K24Rik-201ENSMUST00000185974 833 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
RaraP11416 1700011D18Rik-201ENSMUST00000205762 277 ntBASIC12.37□□□□□ -0.43
RaraP11416 Cmtm2a-203ENSMUST00000212492 635 ntAPPRIS ALT2 TSL 3 BASIC12.37□□□□□ -0.43
RaraP11416 Gm7183-201ENSMUST00000213870 1005 ntBASIC12.37□□□□□ -0.43
RaraP11416 Gm6653-201ENSMUST00000218063 1288 ntBASIC12.37□□□□□ -0.43
RaraP11416 Gm4978-201ENSMUST00000071565 801 ntBASIC12.37□□□□□ -0.43
RaraP11416 Piwil1-201ENSMUST00000086056 4016 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
RaraP11416 Cdk15-201ENSMUST00000114248 1477 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
RaraP11416 Hsd17b6-203ENSMUST00000219447 1459 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
RaraP11416 Ccm2-202ENSMUST00000109721 1551 ntTSL 5 BASIC12.37□□□□□ -0.43
RaraP11416 Banp-204ENSMUST00000170857 5444 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
RaraP11416 Slc35a4-201ENSMUST00000036158 2462 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
RaraP11416 Lrrc61-201ENSMUST00000101436 2674 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
RaraP11416 Cobl-202ENSMUST00000109650 5271 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
RaraP11416 Ift140-201ENSMUST00000024983 5489 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
RaraP11416 Arfgap1-202ENSMUST00000108859 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
RaraP11416 Ticam2-201ENSMUST00000070084 2340 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
RaraP11416 AC159195.3-201ENSMUST00000225162 2211 ntBASIC12.37□□□□□ -0.43
RaraP11416 Gm13657-201ENSMUST00000135682 1939 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
RaraP11416 St6galnac5-201ENSMUST00000044278 5667 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
RaraP11416 Fam149a-201ENSMUST00000093526 5469 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
RaraP11416 Kcnmb3-201ENSMUST00000164954 1715 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
RaraP11416 Olfr1413-202ENSMUST00000214239 1724 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
RaraP11416 Atp6v0e2-202ENSMUST00000203011 1612 ntTSL 2 BASIC12.37□□□□□ -0.43
RaraP11416 Gm13812-201ENSMUST00000118061 1347 ntBASIC12.37□□□□□ -0.43
RaraP11416 Gm13810-201ENSMUST00000118584 1347 ntBASIC12.37□□□□□ -0.43
RaraP11416 Samhd1-203ENSMUST00000109549 3245 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
RaraP11416 Corin-202ENSMUST00000167460 4639 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
RaraP11416 4930588G17Rik-201ENSMUST00000208075 1474 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
RaraP11416 Ints1-210ENSMUST00000200393 7070 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
RaraP11416 Folr1-202ENSMUST00000106982 1039 ntAPPRIS P1 TSL 3 BASIC12.36□□□□□ -0.43
RaraP11416 Uox-202ENSMUST00000121133 768 ntTSL 5 BASIC12.36□□□□□ -0.43
RaraP11416 Has2os-201ENSMUST00000125401 485 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
RaraP11416 Pdlim2-204ENSMUST00000127836 920 ntTSL 5 BASIC12.36□□□□□ -0.43
RaraP11416 Gm11683-201ENSMUST00000147006 918 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
RaraP11416 Cmtm1-201ENSMUST00000159039 1130 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
RaraP11416 Gm15852-201ENSMUST00000159701 915 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
RaraP11416 Ubl5-206ENSMUST00000161486 794 ntTSL 2 BASIC12.36□□□□□ -0.43
RaraP11416 Gm16505-201ENSMUST00000179981 232 ntBASIC12.36□□□□□ -0.43
RaraP11416 Gapdh-ps14-201ENSMUST00000183246 1002 ntBASIC12.36□□□□□ -0.43
RaraP11416 Gm43377-201ENSMUST00000201640 455 ntBASIC12.36□□□□□ -0.43
RaraP11416 Calca-204ENSMUST00000205714 416 ntTSL 2 BASIC12.36□□□□□ -0.43
RaraP11416 9230110C19Rik-202ENSMUST00000215478 533 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
RaraP11416 Gm7293-201ENSMUST00000216682 1007 ntBASIC12.36□□□□□ -0.43
RaraP11416 Crygs-201ENSMUST00000040592 708 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
RaraP11416 Scgb3a2-201ENSMUST00000043803 842 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
RaraP11416 Lnx2-201ENSMUST00000016664 4557 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
RaraP11416 Fn1-213ENSMUST00000188674 7680 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
RaraP11416 Fn1-217ENSMUST00000190780 7694 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
RaraP11416 Gm7642-201ENSMUST00000216345 1809 ntBASIC12.36□□□□□ -0.43
RaraP11416 Als2-204ENSMUST00000163058 5379 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
RaraP11416 Cars-202ENSMUST00000105909 2462 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
RaraP11416 Dab2ip-201ENSMUST00000065001 6392 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
RaraP11416 Gm6793-201ENSMUST00000071732 1604 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
RaraP11416 Kcnb1-204ENSMUST00000207917 11153 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
RaraP11416 Tnip1-201ENSMUST00000018482 2810 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
RaraP11416 Dync1i2-202ENSMUST00000100028 2097 ntTSL 5 BASIC12.36□□□□□ -0.43
RaraP11416 Slc38a8-201ENSMUST00000036748 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
RaraP11416 Setd1a-201ENSMUST00000047075 6487 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 46.7 ms