Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Gm7104-201ENSMUST00000179741 2532 ntBASIC9.2□□□□□ -0.94
Hoxd3P09027 Rara-201ENSMUST00000068133 3384 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hoxd3P09027 Gm19434-201ENSMUST00000204330 2573 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
Hoxd3P09027 Ercc2-202ENSMUST00000108460 3485 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
Hoxd3P09027 Ipo13-201ENSMUST00000036156 3595 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Hoxd3P09027 Snap23-203ENSMUST00000116437 2730 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
Hoxd3P09027 Ip6k2-201ENSMUST00000085018 1846 ntAPPRIS P2 TSL 1 (best) BASIC9.19□□□□□ -0.94
Hoxd3P09027 Gm9866-202ENSMUST00000182473 1882 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
Hoxd3P09027 St6galnac5-201ENSMUST00000044278 5667 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Hoxd3P09027 Trpc2-201ENSMUST00000124189 2874 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Hoxd3P09027 Cacnb2-203ENSMUST00000114723 3945 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
Hoxd3P09027 Dcaf4-201ENSMUST00000021645 2008 ntAPPRIS P2 TSL 5 BASIC9.19□□□□□ -0.94
Hoxd3P09027 Mrps26-202ENSMUST00000145614 4278 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Hoxd3P09027 Tcf4-205ENSMUST00000114980 2192 ntAPPRIS P1 TSL 5 BASIC9.19□□□□□ -0.94
Hoxd3P09027 Foxred1-202ENSMUST00000127996 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC9.19□□□□□ -0.94
Hoxd3P09027 Ercc4-201ENSMUST00000023206 3480 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Hoxd3P09027 4833422M21Rik-202ENSMUST00000181252 2410 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
Hoxd3P09027 Arhgap12-211ENSMUST00000182383 2500 ntAPPRIS ALT2 TSL 5 BASIC9.19□□□□□ -0.94
Hoxd3P09027 Cep112-202ENSMUST00000106715 1161 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
Hoxd3P09027 Prl2c1-202ENSMUST00000110335 852 ntAPPRIS ALT2 TSL 5 BASIC9.19□□□□□ -0.94
Hoxd3P09027 Sfi1-204ENSMUST00000118627 831 ntAPPRIS ALT2 TSL 1 (best) BASIC9.19□□□□□ -0.94
Hoxd3P09027 Gm13045-201ENSMUST00000119019 712 ntBASIC9.19□□□□□ -0.94
Hoxd3P09027 Dmrtc1a-202ENSMUST00000119624 1149 ntAPPRIS ALT2 TSL 5 BASIC9.19□□□□□ -0.94
Hoxd3P09027 Gm13408-201ENSMUST00000119822 798 ntBASIC9.19□□□□□ -0.94
Hoxd3P09027 Gm14746-201ENSMUST00000120309 741 ntBASIC9.19□□□□□ -0.94
Hoxd3P09027 Gm13461-201ENSMUST00000120980 662 ntBASIC9.19□□□□□ -0.94
Hoxd3P09027 Gm8199-201ENSMUST00000121323 823 ntBASIC9.19□□□□□ -0.94
Hoxd3P09027 Gm13935-201ENSMUST00000121859 798 ntBASIC9.19□□□□□ -0.94
Hoxd3P09027 Gm11772-201ENSMUST00000136542 532 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
Hoxd3P09027 Krtap20-2-201ENSMUST00000169954 528 ntAPPRIS P1 BASIC9.19□□□□□ -0.94
Hoxd3P09027 4930562C15Rik-202ENSMUST00000171105 1299 ntTSL 2 BASIC9.19□□□□□ -0.94
Hoxd3P09027 5430405H02Rik-202ENSMUST00000176134 1196 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
Hoxd3P09027 Rpl31-202ENSMUST00000178079 487 ntAPPRIS P1 TSL 2 BASIC9.19□□□□□ -0.94
Hoxd3P09027 Ssty2-201ENSMUST00000179136 684 ntAPPRIS P1 BASIC9.19□□□□□ -0.94
Hoxd3P09027 Rhox5-201ENSMUST00000179626 633 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Hoxd3P09027 1700095B10Rik-201ENSMUST00000182349 978 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
Hoxd3P09027 Gm29329-201ENSMUST00000189053 621 ntTSL 5 BASIC9.19□□□□□ -0.94
Hoxd3P09027 Gm3116-201ENSMUST00000189440 1116 ntBASIC9.19□□□□□ -0.94
Hoxd3P09027 Gm28694-201ENSMUST00000190681 722 ntTSL 3 BASIC9.19□□□□□ -0.94
Hoxd3P09027 Gm28331-201ENSMUST00000191102 621 ntTSL 5 BASIC9.19□□□□□ -0.94
Hoxd3P09027 Gm6140-201ENSMUST00000192494 966 ntBASIC9.19□□□□□ -0.94
Hoxd3P09027 Gm37724-201ENSMUST00000195240 1221 ntBASIC9.19□□□□□ -0.94
Hoxd3P09027 Gm42556-201ENSMUST00000201397 607 ntTSL 3 BASIC9.19□□□□□ -0.94
Hoxd3P09027 Olfr44-203ENSMUST00000216316 1078 ntAPPRIS ALT2 TSL 3 BASIC9.19□□□□□ -0.94
Hoxd3P09027 AC102352.1-201ENSMUST00000224187 582 ntBASIC9.19□□□□□ -0.94
Hoxd3P09027 Rsph1-201ENSMUST00000024832 1164 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Hoxd3P09027 Lcn6-201ENSMUST00000059693 1254 ntTSL 5 BASIC9.19□□□□□ -0.94
Hoxd3P09027 Olfr44-201ENSMUST00000077757 1071 ntAPPRIS P2 TSL 3 BASIC9.19□□□□□ -0.94
Hoxd3P09027 Rpl17-201ENSMUST00000079716 775 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Hoxd3P09027 Csrnp3-207ENSMUST00000145598 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC9.19□□□□□ -0.94
Hoxd3P09027 Fam114a2-201ENSMUST00000020831 2557 ntAPPRIS P3 TSL 1 (best) BASIC9.19□□□□□ -0.94
Hoxd3P09027 Rin3-201ENSMUST00000056950 3892 ntAPPRIS P3 TSL 1 (best) BASIC9.19□□□□□ -0.94
Hoxd3P09027 Nrap-203ENSMUST00000095947 5214 ntTSL 5 BASIC9.19□□□□□ -0.94
Hoxd3P09027 Tmcc3-204ENSMUST00000121471 2614 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
Hoxd3P09027 Pbrm1-208ENSMUST00000112098 6566 ntTSL 5 BASIC9.19□□□□□ -0.94
Hoxd3P09027 Gm15394-201ENSMUST00000119656 1308 ntBASIC9.19□□□□□ -0.94
Hoxd3P09027 Gm11342-203ENSMUST00000224879 1324 ntBASIC9.19□□□□□ -0.94
Hoxd3P09027 Rabgef1-203ENSMUST00000119797 2690 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Hoxd3P09027 Gm28578-201ENSMUST00000187727 2698 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
Hoxd3P09027 Olfr1032-203ENSMUST00000111589 1393 ntAPPRIS P1 TSL 5 BASIC9.19□□□□□ -0.94
Hoxd3P09027 St6galnac4-204ENSMUST00000179989 2826 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Hoxd3P09027 Socs6-201ENSMUST00000070116 6036 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Hoxd3P09027 Gm39321-203ENSMUST00000217090 1575 ntTSL 5 BASIC9.19□□□□□ -0.94
Hoxd3P09027 Phkg2-201ENSMUST00000033086 1570 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Hoxd3P09027 Nanos2-201ENSMUST00000063563 1563 ntAPPRIS P1 BASIC9.19□□□□□ -0.94
Hoxd3P09027 Cyp2d34-201ENSMUST00000109515 1622 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Hoxd3P09027 Gfi1b-201ENSMUST00000028156 1681 ntAPPRIS P3 TSL 1 (best) BASIC9.19□□□□□ -0.94
Hoxd3P09027 Cr1l-201ENSMUST00000075451 1651 ntAPPRIS P2 TSL 1 (best) BASIC9.19□□□□□ -0.94
Hoxd3P09027 Cmtm6-201ENSMUST00000035007 3383 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Hoxd3P09027 Gm43267-201ENSMUST00000199664 1796 ntBASIC9.19□□□□□ -0.94
Hoxd3P09027 Entpd4-206ENSMUST00000184973 3589 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Hoxd3P09027 Entpd4b-204ENSMUST00000185072 3589 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Hoxd3P09027 Gja5-203ENSMUST00000199597 3668 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
Hoxd3P09027 Armcx3-202ENSMUST00000086880 2024 ntAPPRIS P1 TSL 2 BASIC9.19□□□□□ -0.94
Hoxd3P09027 Stim1-202ENSMUST00000209255 4362 ntTSL 5 BASIC9.19□□□□□ -0.94
Hoxd3P09027 Cep41-203ENSMUST00000115131 2256 ntAPPRIS ALT2 TSL 5 BASIC9.19□□□□□ -0.94
Hoxd3P09027 Erich5-201ENSMUST00000060894 2383 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Hoxd3P09027 Drc3-202ENSMUST00000094140 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC9.19□□□□□ -0.94
Hoxd3P09027 Grin2b-202ENSMUST00000111905 7484 ntAPPRIS P1 TSL 5 BASIC9.19□□□□□ -0.94
Hoxd3P09027 Hspa2-202ENSMUST00000219555 2526 ntAPPRIS P1 BASIC9.19□□□□□ -0.94
Hoxd3P09027 Mapk8ip3-204ENSMUST00000117509 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC9.18□□□□□ -0.94
Hoxd3P09027 Dram1-201ENSMUST00000020249 2807 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
Hoxd3P09027 Dnajc12-201ENSMUST00000043317 3025 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
Hoxd3P09027 Wnt3-201ENSMUST00000000127 3076 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
Hoxd3P09027 Tmod2-202ENSMUST00000098552 9871 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
Hoxd3P09027 Ncoa6-203ENSMUST00000109670 7101 ntAPPRIS P2 TSL 5 BASIC9.18□□□□□ -0.94
Hoxd3P09027 Gabbr1-203ENSMUST00000172792 4036 ntTSL 1 (best) BASIC9.18□□□□□ -0.94
Hoxd3P09027 Esr1-201ENSMUST00000067086 4344 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
Hoxd3P09027 Sp4-201ENSMUST00000026367 5694 ntAPPRIS ALT2 TSL 1 (best) BASIC9.18□□□□□ -0.94
Hoxd3P09027 Ifitm10-203ENSMUST00000105988 824 ntAPPRIS P4 TSL 2 BASIC9.18□□□□□ -0.94
Hoxd3P09027 Eif5a-205ENSMUST00000108608 775 ntAPPRIS P1 TSL 5 BASIC9.18□□□□□ -0.94
Hoxd3P09027 Stau1-203ENSMUST00000109236 2860 ntAPPRIS P3 TSL 1 (best) BASIC9.18□□□□□ -0.94
Hoxd3P09027 Taf6-203ENSMUST00000110937 2093 ntTSL 5 BASIC9.18□□□□□ -0.94
Hoxd3P09027 Rbfox2-202ENSMUST00000111581 3072 ntTSL 1 (best) BASIC9.18□□□□□ -0.94
Hoxd3P09027 Gm25317-201ENSMUST00000116824 129 ntBASIC9.18□□□□□ -0.94
Hoxd3P09027 Gm15103-201ENSMUST00000119893 871 ntBASIC9.18□□□□□ -0.94
Hoxd3P09027 Rpl28-ps1-201ENSMUST00000121497 414 ntBASIC9.18□□□□□ -0.94
Hoxd3P09027 n-R5s14-201ENSMUST00000122688 107 ntBASIC9.18□□□□□ -0.94
Hoxd3P09027 Asb8-202ENSMUST00000123626 1100 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
Hoxd3P09027 Asb8-203ENSMUST00000123922 1162 ntAPPRIS P1 TSL 3 BASIC9.18□□□□□ -0.94
Retrieved 100 of 76,532 protein–RNA pairs in 38.8 ms