Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Gm6793-201ENSMUST00000071732 1604 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
Lima1Q9ERG0 Ugt1a10-201ENSMUST00000113142 2244 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Lima1Q9ERG0 Vti1a-201ENSMUST00000095950 3405 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Lima1Q9ERG0 Acin1-203ENSMUST00000111484 4048 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
Lima1Q9ERG0 Slc9a8-201ENSMUST00000047815 4521 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
Lima1Q9ERG0 Chd7-206ENSMUST00000170391 3462 ntTSL 5 BASIC11.3□□□□□ -0.6
Lima1Q9ERG0 Tnc-201ENSMUST00000030056 6833 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Lima1Q9ERG0 Tmprss4-201ENSMUST00000034599 2284 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Lima1Q9ERG0 Ceacam18-201ENSMUST00000032663 1970 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Lima1Q9ERG0 Gm19178-201ENSMUST00000217524 1819 ntBASIC11.3□□□□□ -0.6
Lima1Q9ERG0 Gpr45-201ENSMUST00000114761 1546 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
Lima1Q9ERG0 Actl7a-201ENSMUST00000095079 1513 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
Lima1Q9ERG0 A630076J17Rik-201ENSMUST00000179399 1358 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Lima1Q9ERG0 Pnp2-201ENSMUST00000095925 1372 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Lima1Q9ERG0 Plscr3-203ENSMUST00000108633 2785 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Lima1Q9ERG0 Rbm8a-206ENSMUST00000200647 2620 ntTSL 2 BASIC11.3□□□□□ -0.6
Lima1Q9ERG0 Ets2-201ENSMUST00000023612 3890 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Lima1Q9ERG0 Scamp2-201ENSMUST00000045791 2340 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Lima1Q9ERG0 Plekha6-203ENSMUST00000186917 4820 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Lima1Q9ERG0 D930048N14Rik-202ENSMUST00000117859 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Lima1Q9ERG0 Trim46-203ENSMUST00000107464 3252 ntTSL 5 BASIC11.3□□□□□ -0.6
Lima1Q9ERG0 Lingo1-201ENSMUST00000053568 3295 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Lima1Q9ERG0 Gpr161-201ENSMUST00000111450 6862 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
Lima1Q9ERG0 Rad51b-202ENSMUST00000171210 1858 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Lima1Q9ERG0 Vtn-201ENSMUST00000017488 1744 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Lima1Q9ERG0 Vps9d1-202ENSMUST00000118279 2696 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Lima1Q9ERG0 Eif4ebp2-202ENSMUST00000167087 1422 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
Lima1Q9ERG0 Dnajc25-204ENSMUST00000152199 1141 ntTSL 5 BASIC11.3□□□□□ -0.6
Lima1Q9ERG0 2310057J18Rik-201ENSMUST00000015663 1238 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Lima1Q9ERG0 Atp10d-206ENSMUST00000169617 761 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Lima1Q9ERG0 Tmcc1-205ENSMUST00000173031 1024 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Lima1Q9ERG0 Rps13-ps2-201ENSMUST00000182017 453 ntBASIC11.3□□□□□ -0.6
Lima1Q9ERG0 Ank3-234ENSMUST00000182993 1233 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Lima1Q9ERG0 Gm27320-201ENSMUST00000184892 109 ntBASIC11.3□□□□□ -0.6
Lima1Q9ERG0 Gm4607-201ENSMUST00000206649 577 ntBASIC11.3□□□□□ -0.6
Lima1Q9ERG0 Gm44651-201ENSMUST00000207343 372 ntBASIC11.3□□□□□ -0.6
Lima1Q9ERG0 Gm26953-204ENSMUST00000212526 553 ntTSL 5 BASIC11.3□□□□□ -0.6
Lima1Q9ERG0 AC123665.1-201ENSMUST00000228204 438 ntBASIC11.3□□□□□ -0.6
Lima1Q9ERG0 Polr2e-201ENSMUST00000004786 1148 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Lima1Q9ERG0 Gm5455-201ENSMUST00000058710 715 ntBASIC11.3□□□□□ -0.6
Lima1Q9ERG0 Olfr569-201ENSMUST00000078191 945 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
Lima1Q9ERG0 Olfr582-201ENSMUST00000098212 960 ntBASIC11.3□□□□□ -0.6
Lima1Q9ERG0 Tnfrsf9-201ENSMUST00000030808 2099 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
Lima1Q9ERG0 Fdft1-201ENSMUST00000054963 2860 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Lima1Q9ERG0 Dab2-211ENSMUST00000161812 2710 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Lima1Q9ERG0 Ppp6r3-201ENSMUST00000025846 4841 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
Lima1Q9ERG0 Slc38a11-201ENSMUST00000112420 1606 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Lima1Q9ERG0 Zfp36-201ENSMUST00000051241 2790 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Lima1Q9ERG0 Lnx1-202ENSMUST00000087161 2753 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
Lima1Q9ERG0 Pitpnb-204ENSMUST00000200298 2632 ntAPPRIS ALT1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Lima1Q9ERG0 4632427E13Rik-202ENSMUST00000147198 6559 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Lima1Q9ERG0 Myh2-201ENSMUST00000018641 6018 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
Lima1Q9ERG0 Gm6559-201ENSMUST00000204678 1694 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Lima1Q9ERG0 Dzip1l-203ENSMUST00000112885 4350 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
Lima1Q9ERG0 Asns-202ENSMUST00000115542 2016 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
Lima1Q9ERG0 AC124433.1-202ENSMUST00000224762 1535 ntBASIC11.3□□□□□ -0.6
Lima1Q9ERG0 D630003M21Rik-201ENSMUST00000046944 3910 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
Lima1Q9ERG0 Vezt-202ENSMUST00000118077 2223 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Lima1Q9ERG0 Itgb1bp1-206ENSMUST00000173729 1701 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Lima1Q9ERG0 Gm40617-201ENSMUST00000218840 2420 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Lima1Q9ERG0 Ddx55-201ENSMUST00000071057 2799 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Lima1Q9ERG0 Cacna1s-201ENSMUST00000112064 6251 ntAPPRIS P3 TSL 2 BASIC11.29□□□□□ -0.6
Lima1Q9ERG0 Ppip5k1-205ENSMUST00000110628 5404 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
Lima1Q9ERG0 Tagln2-202ENSMUST00000111230 1586 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Lima1Q9ERG0 Gm10829-201ENSMUST00000202084 2988 ntBASIC11.29□□□□□ -0.6
Lima1Q9ERG0 Serpina1b-202ENSMUST00000164454 1760 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Lima1Q9ERG0 Acot9-201ENSMUST00000026324 1752 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Lima1Q9ERG0 BC004004-203ENSMUST00000149405 1402 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
Lima1Q9ERG0 AC171277.1-201ENSMUST00000216902 1441 ntBASIC11.29□□□□□ -0.6
Lima1Q9ERG0 Tmc5-203ENSMUST00000121715 3906 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Lima1Q9ERG0 C1qtnf3-201ENSMUST00000022853 2338 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
Lima1Q9ERG0 Nmt2-201ENSMUST00000081932 4461 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Lima1Q9ERG0 Tex10-206ENSMUST00000164866 3203 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Lima1Q9ERG0 Pex13-201ENSMUST00000020523 4146 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Lima1Q9ERG0 Map3k12-208ENSMUST00000171565 4318 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Lima1Q9ERG0 Tctn3-201ENSMUST00000025981 2743 ntAPPRIS P2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Lima1Q9ERG0 Abhd18-201ENSMUST00000108077 3277 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Lima1Q9ERG0 Mobp-202ENSMUST00000093773 3286 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Lima1Q9ERG0 Prex1-202ENSMUST00000099080 5818 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Lima1Q9ERG0 Tnnt3-217ENSMUST00000105957 1028 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
Lima1Q9ERG0 Gm11511-201ENSMUST00000118146 540 ntBASIC11.29□□□□□ -0.6
Lima1Q9ERG0 Gm13350-201ENSMUST00000120519 479 ntBASIC11.29□□□□□ -0.6
Lima1Q9ERG0 Rps28-202ENSMUST00000166693 271 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
Lima1Q9ERG0 Cdk3-ps-202ENSMUST00000174177 915 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
Lima1Q9ERG0 Gm7584-201ENSMUST00000175829 940 ntBASIC11.29□□□□□ -0.6
Lima1Q9ERG0 Gm5441-202ENSMUST00000190132 449 ntTSL 2 BASIC11.29□□□□□ -0.6
Lima1Q9ERG0 Gm28511-201ENSMUST00000191594 450 ntTSL 3 BASIC11.29□□□□□ -0.6
Lima1Q9ERG0 Gm42797-201ENSMUST00000197573 494 ntTSL 3 BASIC11.29□□□□□ -0.6
Lima1Q9ERG0 Gm40437-201ENSMUST00000222338 767 ntTSL 5 BASIC11.29□□□□□ -0.6
Lima1Q9ERG0 H2-M10.2-201ENSMUST00000023845 1113 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Lima1Q9ERG0 Odf4-201ENSMUST00000038932 1078 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Lima1Q9ERG0 Ifi27-205ENSMUST00000085065 977 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Lima1Q9ERG0 Vwa5b2-207ENSMUST00000159780 4042 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
Lima1Q9ERG0 Ptgfr-201ENSMUST00000029670 6624 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Lima1Q9ERG0 Cinp-201ENSMUST00000043716 2029 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Lima1Q9ERG0 Gm10782-202ENSMUST00000223775 1480 ntBASIC11.29□□□□□ -0.6
Lima1Q9ERG0 Khnyn-201ENSMUST00000022831 3898 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Lima1Q9ERG0 0610038B21Rik-201ENSMUST00000181420 1687 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Lima1Q9ERG0 5033406O09Rik-201ENSMUST00000221314 1662 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Lima1Q9ERG0 Zbtb45-205ENSMUST00000210282 3908 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 11.6 ms