Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 BC003331-203ENSMUST00000097546 3174 ntAPPRIS ALT2 TSL 5 BASIC10.69□□□□□ -0.7
Cdc40Q9DC48 Trappc11-201ENSMUST00000039061 4332 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdc40Q9DC48 Hk3-203ENSMUST00000126234 3032 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdc40Q9DC48 Epb41l2-204ENSMUST00000217929 3621 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Cdc40Q9DC48 Btnl7-ps-201ENSMUST00000023469 1763 ntBASIC10.69□□□□□ -0.7
Cdc40Q9DC48 Otog-201ENSMUST00000164538 10043 ntAPPRIS P1 TSL 5 BASIC10.69□□□□□ -0.7
Cdc40Q9DC48 Angpt4-201ENSMUST00000028955 2335 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdc40Q9DC48 Thy1-201ENSMUST00000114840 1735 ntAPPRIS P1 TSL 2 BASIC10.69□□□□□ -0.7
Cdc40Q9DC48 Npy5r-202ENSMUST00000211920 1715 ntAPPRIS P1 TSL 5 BASIC10.69□□□□□ -0.7
Cdc40Q9DC48 Mgmt-201ENSMUST00000081510 2894 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdc40Q9DC48 Cdc45-202ENSMUST00000096990 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdc40Q9DC48 Slc22a4-201ENSMUST00000020586 2263 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdc40Q9DC48 Gm45011-201ENSMUST00000207620 2297 ntBASIC10.69□□□□□ -0.7
Cdc40Q9DC48 Akap10-203ENSMUST00000108710 3394 ntTSL 2 BASIC10.69□□□□□ -0.7
Cdc40Q9DC48 Grin1-206ENSMUST00000114314 3882 ntTSL 5 BASIC10.69□□□□□ -0.7
Cdc40Q9DC48 Camsap3-209ENSMUST00000207970 3817 ntAPPRIS ALT2 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdc40Q9DC48 Plod3-201ENSMUST00000004968 3280 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdc40Q9DC48 Htr2c-202ENSMUST00000096299 4883 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdc40Q9DC48 Bdkrb2-201ENSMUST00000001652 3792 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdc40Q9DC48 Vps9d1-202ENSMUST00000118279 2696 ntAPPRIS ALT2 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdc40Q9DC48 4930563E18Rik-201ENSMUST00000180948 1553 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Cdc40Q9DC48 Phkg2-201ENSMUST00000033086 1570 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdc40Q9DC48 Pip5kl1-201ENSMUST00000055304 1577 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdc40Q9DC48 Gfap-201ENSMUST00000067444 2648 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdc40Q9DC48 Kctd10-202ENSMUST00000102581 3103 ntAPPRIS P3 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdc40Q9DC48 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdc40Q9DC48 Adamts14-202ENSMUST00000120336 3645 ntAPPRIS ALT2 TSL 5 BASIC10.69□□□□□ -0.7
Cdc40Q9DC48 Slc12a7-201ENSMUST00000017900 5142 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Cdc40Q9DC48 Gm44999-201ENSMUST00000207456 1493 ntBASIC10.68□□□□□ -0.7
Cdc40Q9DC48 3110062M04Rik-203ENSMUST00000115007 3326 ntAPPRIS P3 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdc40Q9DC48 Emc1-201ENSMUST00000042096 4706 ntAPPRIS P3 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdc40Q9DC48 Arhgef4-204ENSMUST00000159747 6514 ntAPPRIS ALT2 TSL 5 BASIC10.68□□□□□ -0.7
Cdc40Q9DC48 Prkag3-201ENSMUST00000081636 2341 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdc40Q9DC48 Plscr1-201ENSMUST00000093801 2302 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdc40Q9DC48 Emp1-202ENSMUST00000111907 2763 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdc40Q9DC48 Mical3-217ENSMUST00000207889 9204 ntAPPRIS P1 TSL 5 BASIC10.68□□□□□ -0.7
Cdc40Q9DC48 Gsdmcl-ps-203ENSMUST00000188367 1375 ntBASIC10.68□□□□□ -0.7
Cdc40Q9DC48 Gm5136-201ENSMUST00000218023 1397 ntAPPRIS P1 BASIC10.68□□□□□ -0.7
Cdc40Q9DC48 Psmc3-201ENSMUST00000002171 1819 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Cdc40Q9DC48 Tfrc-201ENSMUST00000023486 4890 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdc40Q9DC48 Clec16a-203ENSMUST00000115823 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdc40Q9DC48 Kifap3-201ENSMUST00000027877 3946 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdc40Q9DC48 Gm26794-201ENSMUST00000180810 4312 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Cdc40Q9DC48 Urad-201ENSMUST00000100433 766 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdc40Q9DC48 Ifitm10-203ENSMUST00000105988 824 ntAPPRIS P4 TSL 2 BASIC10.68□□□□□ -0.7
Cdc40Q9DC48 Cdc42se1-204ENSMUST00000107201 907 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdc40Q9DC48 Eif5a-205ENSMUST00000108608 775 ntAPPRIS P1 TSL 5 BASIC10.68□□□□□ -0.7
Cdc40Q9DC48 Camk1d-202ENSMUST00000114987 1295 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Cdc40Q9DC48 Gm11956-201ENSMUST00000119525 512 ntBASIC10.68□□□□□ -0.7
Cdc40Q9DC48 Rab15-203ENSMUST00000121716 739 ntTSL 3 BASIC10.68□□□□□ -0.7
Cdc40Q9DC48 Gm11960-201ENSMUST00000122068 925 ntBASIC10.68□□□□□ -0.7
Cdc40Q9DC48 Aamdc-213ENSMUST00000154853 883 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Cdc40Q9DC48 Gm22144-201ENSMUST00000157402 102 ntBASIC10.68□□□□□ -0.7
Cdc40Q9DC48 Gm15954-201ENSMUST00000160746 466 ntTSL 5 BASIC10.68□□□□□ -0.7
Cdc40Q9DC48 Adgre5-208ENSMUST00000166939 2980 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Cdc40Q9DC48 Taf9-201ENSMUST00000167256 1230 ntAPPRIS P1 TSL 2 BASIC10.68□□□□□ -0.7
Cdc40Q9DC48 Gm17168-201ENSMUST00000169146 345 ntTSL 5 BASIC10.68□□□□□ -0.7
Cdc40Q9DC48 Slc2a4rg-ps-202ENSMUST00000176590 1143 ntBASIC10.68□□□□□ -0.7
Cdc40Q9DC48 Creb1-209ENSMUST00000190348 1260 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Cdc40Q9DC48 Ccdc153-202ENSMUST00000213891 792 ntAPPRIS ALT2 TSL 3 BASIC10.68□□□□□ -0.7
Cdc40Q9DC48 Adgre5-201ENSMUST00000002964 2986 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Cdc40Q9DC48 Plp2-201ENSMUST00000033486 1157 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdc40Q9DC48 Gm6781-201ENSMUST00000038304 1242 ntBASIC10.68□□□□□ -0.7
Cdc40Q9DC48 Prm3-201ENSMUST00000050864 410 ntAPPRIS P1 BASIC10.68□□□□□ -0.7
Cdc40Q9DC48 Tagln3-201ENSMUST00000096057 1240 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdc40Q9DC48 Ep400-202ENSMUST00000112433 3399 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Cdc40Q9DC48 Cln8-201ENSMUST00000027554 6857 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdc40Q9DC48 Ctps2-205ENSMUST00000112302 3223 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Cdc40Q9DC48 Xpc-201ENSMUST00000032182 3634 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdc40Q9DC48 Polr1b-201ENSMUST00000028874 2769 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Cdc40Q9DC48 Rnf20-210ENSMUST00000167496 4312 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdc40Q9DC48 C2cd5-203ENSMUST00000171349 4292 ntAPPRIS P1 TSL 5 BASIC10.68□□□□□ -0.7
Cdc40Q9DC48 Acat1-201ENSMUST00000034547 3405 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdc40Q9DC48 Zmiz2-205ENSMUST00000109787 4116 ntAPPRIS P2 TSL 5 BASIC10.68□□□□□ -0.7
Cdc40Q9DC48 Madd-206ENSMUST00000099725 5905 ntAPPRIS ALT2 TSL 5 BASIC10.68□□□□□ -0.7
Cdc40Q9DC48 Slc6a5-203ENSMUST00000207753 6966 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdc40Q9DC48 Gatb-202ENSMUST00000107672 1820 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Cdc40Q9DC48 Matn2-201ENSMUST00000022947 3551 ntAPPRIS P2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Cdc40Q9DC48 Parp9-203ENSMUST00000114878 3548 ntAPPRIS P2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Cdc40Q9DC48 Grpel1-201ENSMUST00000031099 3528 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Cdc40Q9DC48 Cysltr2-202ENSMUST00000169168 1744 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Cdc40Q9DC48 Plekhn1-202ENSMUST00000105571 2004 ntTSL 5 BASIC10.67□□□□□ -0.7
Cdc40Q9DC48 Tcf4-238ENSMUST00000201631 2660 ntTSL 5 BASIC10.67□□□□□ -0.7
Cdc40Q9DC48 Zfp217-202ENSMUST00000109155 5670 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Cdc40Q9DC48 Taf6-202ENSMUST00000110936 2308 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Cdc40Q9DC48 Prps1-201ENSMUST00000033809 1965 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Cdc40Q9DC48 Grin1-208ENSMUST00000114318 3920 ntTSL 5 BASIC10.67□□□□□ -0.7
Cdc40Q9DC48 Immt-202ENSMUST00000101301 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Cdc40Q9DC48 Smchd1-201ENSMUST00000127430 7052 ntAPPRIS P1 TSL 5 BASIC10.67□□□□□ -0.7
Cdc40Q9DC48 Eif5-213ENSMUST00000222388 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Cdc40Q9DC48 Gm5795-201ENSMUST00000100920 984 ntAPPRIS P2 TSL 5 BASIC10.67□□□□□ -0.7
Cdc40Q9DC48 Eif5a-206ENSMUST00000108609 849 ntAPPRIS P1 TSL 3 BASIC10.67□□□□□ -0.7
Cdc40Q9DC48 Tsc22d4-204ENSMUST00000110983 1043 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Cdc40Q9DC48 Cav2-202ENSMUST00000115459 974 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Cdc40Q9DC48 Rps2-ps4-201ENSMUST00000121977 633 ntBASIC10.67□□□□□ -0.7
Cdc40Q9DC48 Gm42791-202ENSMUST00000147473 727 ntAPPRIS P1 TSL 5 BASIC10.67□□□□□ -0.7
Cdc40Q9DC48 Gm3685-201ENSMUST00000169215 984 ntAPPRIS P5 TSL 5 BASIC10.67□□□□□ -0.7
Cdc40Q9DC48 Spaca6-209ENSMUST00000172097 1073 ntAPPRIS P1 TSL 5 BASIC10.67□□□□□ -0.7
Cdc40Q9DC48 Higd1c-201ENSMUST00000175683 507 ntAPPRIS P1 TSL 3 BASIC10.67□□□□□ -0.7
Cdc40Q9DC48 1700029J03Rik-201ENSMUST00000185803 789 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Retrieved 100 of 76,532 protein–RNA pairs in 45.8 ms