Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Shbg-201ENSMUST00000005334 1419 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col28a1Q2UY11 Sh2d2a-202ENSMUST00000107581 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col28a1Q2UY11 Gm19178-201ENSMUST00000217524 1819 ntBASIC11.16□□□□□ -0.62
Col28a1Q2UY11 Ppp1r16b-202ENSMUST00000052927 6685 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col28a1Q2UY11 Pphln1-201ENSMUST00000049122 4023 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Col28a1Q2UY11 Epb41l1-201ENSMUST00000029155 6220 ntAPPRIS P1 TSL 5 BASIC11.16□□□□□ -0.62
Col28a1Q2UY11 Myh10-203ENSMUST00000102611 7791 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col28a1Q2UY11 Ak8-201ENSMUST00000074156 1567 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col28a1Q2UY11 Nop14-201ENSMUST00000041364 2702 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Col28a1Q2UY11 Olfr1428-203ENSMUST00000214103 2127 ntAPPRIS P1 TSL 5 BASIC11.15□□□□□ -0.62
Col28a1Q2UY11 Tmprss4-201ENSMUST00000034599 2284 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Col28a1Q2UY11 Entpd8-201ENSMUST00000044078 2299 ntAPPRIS P2 TSL 1 (best) BASIC11.15□□□□□ -0.62
Col28a1Q2UY11 Tmem19-201ENSMUST00000092170 3012 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Col28a1Q2UY11 Gm15958-202ENSMUST00000153479 2087 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
Col28a1Q2UY11 Poldip3-202ENSMUST00000100375 3157 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
Col28a1Q2UY11 5031434O11Rik-201ENSMUST00000180404 3731 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
Col28a1Q2UY11 Kcnma1-213ENSMUST00000188991 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
Col28a1Q2UY11 Rps6ka1-209ENSMUST00000174481 2228 ntTSL 5 BASIC11.15□□□□□ -0.62
Col28a1Q2UY11 Msantd1-201ENSMUST00000050535 2793 ntAPPRIS P2 TSL 1 (best) BASIC11.15□□□□□ -0.62
Col28a1Q2UY11 Pip5k1a-205ENSMUST00000107233 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
Col28a1Q2UY11 Vps25-204ENSMUST00000107280 876 ntTSL 2 BASIC11.15□□□□□ -0.62
Col28a1Q2UY11 Pmp22-203ENSMUST00000108701 723 ntAPPRIS P1 TSL 3 BASIC11.15□□□□□ -0.62
Col28a1Q2UY11 Gm7722-201ENSMUST00000120646 741 ntBASIC11.15□□□□□ -0.62
Col28a1Q2UY11 Gm14832-201ENSMUST00000121289 322 ntBASIC11.15□□□□□ -0.62
Col28a1Q2UY11 Gm13587-201ENSMUST00000152645 366 ntTSL 5 BASIC11.15□□□□□ -0.62
Col28a1Q2UY11 Retn-202ENSMUST00000169234 1139 ntAPPRIS P1 TSL 2 BASIC11.15□□□□□ -0.62
Col28a1Q2UY11 Gstp1-201ENSMUST00000169613 757 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Col28a1Q2UY11 AC123665.1-201ENSMUST00000228204 438 ntBASIC11.15□□□□□ -0.62
Col28a1Q2UY11 Prss34-201ENSMUST00000037453 1216 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Col28a1Q2UY11 Prr15l-202ENSMUST00000062172 1242 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Col28a1Q2UY11 Tnc-201ENSMUST00000030056 6833 ntAPPRIS P2 TSL 1 (best) BASIC11.15□□□□□ -0.62
Col28a1Q2UY11 Ceacam18-201ENSMUST00000032663 1970 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Col28a1Q2UY11 1700061G19Rik-201ENSMUST00000025048 2677 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Col28a1Q2UY11 Gm15326-202ENSMUST00000128198 1422 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
Col28a1Q2UY11 Ifi47-202ENSMUST00000109202 1773 ntAPPRIS P1 TSL 2 BASIC11.15□□□□□ -0.62
Col28a1Q2UY11 Togaram1-201ENSMUST00000066296 6372 ntAPPRIS P2 TSL 1 (best) BASIC11.15□□□□□ -0.62
Col28a1Q2UY11 Kcnk10-201ENSMUST00000110113 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
Col28a1Q2UY11 9230105E05Rik-201ENSMUST00000161291 2250 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
Col28a1Q2UY11 D330041H03Rik-205ENSMUST00000181014 1903 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
Col28a1Q2UY11 Phkg2-201ENSMUST00000033086 1570 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Col28a1Q2UY11 Swap70-201ENSMUST00000033325 4027 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Col28a1Q2UY11 Itgal-204ENSMUST00000120857 4533 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.63
Col28a1Q2UY11 Cpt1c-201ENSMUST00000063761 2793 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
Col28a1Q2UY11 C4a-207ENSMUST00000160679 5371 ntTSL 1 (best) BASIC11.15□□□□□ -0.63
Col28a1Q2UY11 Ptpn4-201ENSMUST00000064091 10874 ntAPPRIS P1 TSL 5 BASIC11.15□□□□□ -0.63
Col28a1Q2UY11 Itgb1bp1-206ENSMUST00000173729 1701 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
Col28a1Q2UY11 Igf1-207ENSMUST00000122386 1391 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
Col28a1Q2UY11 Msra-201ENSMUST00000067927 1860 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
Col28a1Q2UY11 Vars2-201ENSMUST00000043674 4425 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
Col28a1Q2UY11 Zfp654-202ENSMUST00000207826 6261 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
Col28a1Q2UY11 Tmem151a-201ENSMUST00000077066 4006 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col28a1Q2UY11 Rad51ap2-201ENSMUST00000124065 3175 ntAPPRIS P1 TSL 2 BASIC11.14□□□□□ -0.63
Col28a1Q2UY11 Thbs4-201ENSMUST00000022213 3198 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col28a1Q2UY11 Mybph-202ENSMUST00000191577 2320 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.63
Col28a1Q2UY11 Hsd3b6-201ENSMUST00000029463 1802 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col28a1Q2UY11 Xrra1-202ENSMUST00000207855 1334 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
Col28a1Q2UY11 Tspan18-202ENSMUST00000111265 3751 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.63
Col28a1Q2UY11 Gm10548-201ENSMUST00000097631 2629 ntBASIC11.14□□□□□ -0.63
Col28a1Q2UY11 Gm10646-201ENSMUST00000213227 3293 ntTSL 2 BASIC11.14□□□□□ -0.63
Col28a1Q2UY11 Als2-204ENSMUST00000163058 5379 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col28a1Q2UY11 Scaf1-206ENSMUST00000211735 4209 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col28a1Q2UY11 Adra2b-202ENSMUST00000104934 4014 ntAPPRIS ALT2 BASIC11.14□□□□□ -0.63
Col28a1Q2UY11 Ckap2-201ENSMUST00000046916 2593 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col28a1Q2UY11 Gm5833-202ENSMUST00000190707 1932 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Col28a1Q2UY11 AC207128.2-201ENSMUST00000223708 1924 ntBASIC11.14□□□□□ -0.63
Col28a1Q2UY11 Best1-201ENSMUST00000117346 2080 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.63
Col28a1Q2UY11 Gm23200-201ENSMUST00000104379 132 ntBASIC11.14□□□□□ -0.63
Col28a1Q2UY11 Gm11596-201ENSMUST00000105058 1079 ntAPPRIS P1 BASIC11.14□□□□□ -0.63
Col28a1Q2UY11 Gm11595-201ENSMUST00000107440 1200 ntAPPRIS P1 BASIC11.14□□□□□ -0.63
Col28a1Q2UY11 Gm11985-201ENSMUST00000122910 1007 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.63
Col28a1Q2UY11 Gm25043-201ENSMUST00000158604 212 ntBASIC11.14□□□□□ -0.63
Col28a1Q2UY11 Gm20426-201ENSMUST00000173657 440 ntBASIC11.14□□□□□ -0.63
Col28a1Q2UY11 Gm8856-201ENSMUST00000185254 1144 ntBASIC11.14□□□□□ -0.63
Col28a1Q2UY11 Gm28192-201ENSMUST00000189381 778 ntTSL 5 BASIC11.14□□□□□ -0.63
Col28a1Q2UY11 Gm43378-201ENSMUST00000199336 582 ntBASIC11.14□□□□□ -0.63
Col28a1Q2UY11 Proz-203ENSMUST00000211363 984 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Col28a1Q2UY11 AC110091.1-201ENSMUST00000216004 691 ntTSL 3 BASIC11.14□□□□□ -0.63
Col28a1Q2UY11 Net1-206ENSMUST00000222504 447 ntTSL 3 BASIC11.14□□□□□ -0.63
Col28a1Q2UY11 Araf-201ENSMUST00000001155 2358 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col28a1Q2UY11 Synpr-201ENSMUST00000070323 2541 ntAPPRIS P3 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col28a1Q2UY11 Csnk1g1-202ENSMUST00000117849 5173 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Col28a1Q2UY11 Gpr161-201ENSMUST00000111450 6862 ntAPPRIS P3 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col28a1Q2UY11 Otof-202ENSMUST00000114747 6881 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Col28a1Q2UY11 Fbxo25-204ENSMUST00000209913 2035 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col28a1Q2UY11 Stx7-205ENSMUST00000220041 3435 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col28a1Q2UY11 Pde4c-201ENSMUST00000034307 3203 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Col28a1Q2UY11 Son-203ENSMUST00000117633 8731 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
Col28a1Q2UY11 AL670603.1-201ENSMUST00000216692 1535 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.63
Col28a1Q2UY11 Gm10912-201ENSMUST00000104891 1661 ntAPPRIS P1 BASIC11.14□□□□□ -0.63
Col28a1Q2UY11 Arhgap11a-202ENSMUST00000110947 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col28a1Q2UY11 Itgb2-201ENSMUST00000000299 2970 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Col28a1Q2UY11 Tnip1-201ENSMUST00000018482 2810 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
Col28a1Q2UY11 Acot9-201ENSMUST00000026324 1752 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Col28a1Q2UY11 Gm43908-201ENSMUST00000205074 1472 ntBASIC11.13□□□□□ -0.63
Col28a1Q2UY11 Srfbp1-201ENSMUST00000025406 1463 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Col28a1Q2UY11 Shoc2-201ENSMUST00000025932 4106 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Col28a1Q2UY11 Etfrf1-203ENSMUST00000111721 1336 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Col28a1Q2UY11 Ppip5k1-205ENSMUST00000110628 5404 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
Col28a1Q2UY11 Sdccag8-201ENSMUST00000027785 2776 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Col28a1Q2UY11 Pitpnb-201ENSMUST00000086635 2761 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
Retrieved 100 of 76,532 protein–RNA pairs in 51.3 ms