Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Nxph2-201ENSMUST00000102945 2579 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Col6a1Q04857 Gm12474-201ENSMUST00000122898 1410 ntTSL 2 BASIC12.71□□□□□ -0.38
Col6a1Q04857 Col8a1-201ENSMUST00000089332 5108 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Col6a1Q04857 Pla2g4f-201ENSMUST00000054651 3116 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Col6a1Q04857 Zfp362-202ENSMUST00000106072 2812 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Col6a1Q04857 Prkcsh-202ENSMUST00000115331 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col6a1Q04857 Ripk3-202ENSMUST00000168716 1964 ntTSL 5 BASIC12.7□□□□□ -0.38
Col6a1Q04857 4933412E12Rik-201ENSMUST00000217853 1698 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Col6a1Q04857 Ivns1abp-202ENSMUST00000097543 3337 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Col6a1Q04857 Misp-202ENSMUST00000169041 2497 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col6a1Q04857 Rcor3-201ENSMUST00000073279 3748 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Col6a1Q04857 Hps1-209ENSMUST00000162061 2608 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col6a1Q04857 Clpx-201ENSMUST00000015501 2885 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col6a1Q04857 Lhfpl1-201ENSMUST00000040084 1830 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col6a1Q04857 Ptbp1-216ENSMUST00000172282 3110 ntAPPRIS P4 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col6a1Q04857 Gm15610-201ENSMUST00000120584 195 ntBASIC12.7□□□□□ -0.38
Col6a1Q04857 Gm15620-201ENSMUST00000122949 270 ntBASIC12.7□□□□□ -0.38
Col6a1Q04857 1700057H21Rik-202ENSMUST00000154530 506 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Col6a1Q04857 Gm15954-201ENSMUST00000160746 466 ntTSL 5 BASIC12.7□□□□□ -0.38
Col6a1Q04857 1700006J14Rik-204ENSMUST00000161511 574 ntTSL 3 BASIC12.7□□□□□ -0.38
Col6a1Q04857 1810020O05Rik-201ENSMUST00000162547 1047 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Col6a1Q04857 Gm43163-201ENSMUST00000196571 442 ntBASIC12.7□□□□□ -0.38
Col6a1Q04857 Gm42599-201ENSMUST00000201308 469 ntBASIC12.7□□□□□ -0.38
Col6a1Q04857 Gm45085-201ENSMUST00000209100 441 ntBASIC12.7□□□□□ -0.38
Col6a1Q04857 Gm15802-202ENSMUST00000209595 1094 ntTSL 5 BASIC12.7□□□□□ -0.38
Col6a1Q04857 Gm17749-201ENSMUST00000216282 690 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Col6a1Q04857 Gm7940-201ENSMUST00000218195 769 ntBASIC12.7□□□□□ -0.38
Col6a1Q04857 AC153152.3-201ENSMUST00000222188 1135 ntBASIC12.7□□□□□ -0.38
Col6a1Q04857 Spata46-201ENSMUST00000056991 771 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col6a1Q04857 Vmn1r44-201ENSMUST00000089420 1108 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
Col6a1Q04857 Gm6509-201ENSMUST00000098286 1218 ntTSL 5 BASIC12.7□□□□□ -0.38
Col6a1Q04857 Gm18210-201ENSMUST00000209001 1524 ntBASIC12.7□□□□□ -0.38
Col6a1Q04857 Alg12-201ENSMUST00000043087 1793 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Col6a1Q04857 Zyg11a-201ENSMUST00000043793 2289 ntAPPRIS P2 TSL 5 BASIC12.7□□□□□ -0.38
Col6a1Q04857 Pla2g16-202ENSMUST00000136465 3048 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Col6a1Q04857 Ptpn14-202ENSMUST00000097442 10746 ntAPPRIS P2 TSL 5 BASIC12.7□□□□□ -0.38
Col6a1Q04857 Plekhn1-203ENSMUST00000217885 1982 ntTSL 5 BASIC12.7□□□□□ -0.38
Col6a1Q04857 Sspn-201ENSMUST00000032383 4431 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col6a1Q04857 Bckdk-201ENSMUST00000071056 3405 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col6a1Q04857 Slc26a6-201ENSMUST00000098376 2402 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
Col6a1Q04857 Gng7-203ENSMUST00000117805 3382 ntAPPRIS ALT1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col6a1Q04857 Lrp1-203ENSMUST00000121829 2887 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Col6a1Q04857 Lsp1-201ENSMUST00000018963 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col6a1Q04857 Gm6831-202ENSMUST00000213025 1673 ntBASIC12.7□□□□□ -0.38
Col6a1Q04857 Papss1-201ENSMUST00000029666 2600 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col6a1Q04857 Lynx1-201ENSMUST00000023259 4023 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col6a1Q04857 Galntl6-208ENSMUST00000204128 5680 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Col6a1Q04857 Eif5-212ENSMUST00000222375 3547 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col6a1Q04857 Poll-201ENSMUST00000026239 2324 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col6a1Q04857 Dnmbp-201ENSMUST00000026209 4882 ntAPPRIS P2 TSL 2 BASIC12.7□□□□□ -0.38
Col6a1Q04857 Zeb2-201ENSMUST00000028229 5335 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Col6a1Q04857 Gm37105-201ENSMUST00000192251 2085 ntBASIC12.69□□□□□ -0.38
Col6a1Q04857 Yae1d1-204ENSMUST00000222796 1382 ntTSL 5 BASIC12.69□□□□□ -0.38
Col6a1Q04857 Brap-202ENSMUST00000111765 3861 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Col6a1Q04857 Mettl13-201ENSMUST00000028017 4541 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col6a1Q04857 Snai2-201ENSMUST00000023356 2031 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col6a1Q04857 Vsx2-201ENSMUST00000021665 3270 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col6a1Q04857 Fam126a-203ENSMUST00000115109 2195 ntTSL 5 BASIC12.69□□□□□ -0.38
Col6a1Q04857 Pde4d-201ENSMUST00000074103 2167 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Col6a1Q04857 BC052040-203ENSMUST00000166472 2770 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Col6a1Q04857 Vsir-202ENSMUST00000105459 1290 ntTSL 5 BASIC12.69□□□□□ -0.38
Col6a1Q04857 Eef1d-207ENSMUST00000116440 896 ntAPPRIS ALT2 TSL 3 BASIC12.69□□□□□ -0.38
Col6a1Q04857 Gm11957-201ENSMUST00000118304 779 ntBASIC12.69□□□□□ -0.38
Col6a1Q04857 Isg20-203ENSMUST00000120331 845 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col6a1Q04857 Hmgn2-208ENSMUST00000136327 772 ntTSL 2 BASIC12.69□□□□□ -0.38
Col6a1Q04857 Prdx2-208ENSMUST00000164807 1175 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col6a1Q04857 Mc5r-201ENSMUST00000172148 1162 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col6a1Q04857 Gm24809-201ENSMUST00000175318 271 ntBASIC12.69□□□□□ -0.38
Col6a1Q04857 Gm10807-201ENSMUST00000177134 795 ntBASIC12.69□□□□□ -0.38
Col6a1Q04857 Gm26647-201ENSMUST00000180816 1255 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Col6a1Q04857 Calm5-202ENSMUST00000184271 423 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col6a1Q04857 Srrt-209ENSMUST00000197466 2972 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
Col6a1Q04857 Srrt-212ENSMUST00000199243 2988 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col6a1Q04857 Gm43854-201ENSMUST00000200418 394 ntBASIC12.69□□□□□ -0.38
Col6a1Q04857 Gm43671-201ENSMUST00000200422 433 ntBASIC12.69□□□□□ -0.38
Col6a1Q04857 AI839979-201ENSMUST00000200738 654 ntTSL 2 BASIC12.69□□□□□ -0.38
Col6a1Q04857 Gng8-202ENSMUST00000205459 522 ntAPPRIS P1 TSL 3 BASIC12.69□□□□□ -0.38
Col6a1Q04857 Gm44882-201ENSMUST00000205702 802 ntBASIC12.69□□□□□ -0.38
Col6a1Q04857 Gm44507-201ENSMUST00000206249 343 ntTSL 5 BASIC12.69□□□□□ -0.38
Col6a1Q04857 Nutf2-202ENSMUST00000212042 645 ntAPPRIS P1 TSL 3 BASIC12.69□□□□□ -0.38
Col6a1Q04857 Gm39397-201ENSMUST00000212331 228 ntTSL 5 BASIC12.69□□□□□ -0.38
Col6a1Q04857 Elob-201ENSMUST00000069579 508 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col6a1Q04857 Kank4-201ENSMUST00000102790 4795 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col6a1Q04857 Ctsc-201ENSMUST00000032779 2493 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col6a1Q04857 Rtl5-204ENSMUST00000188731 4325 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col6a1Q04857 Slc39a3-205ENSMUST00000168076 3461 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col6a1Q04857 Klf11-201ENSMUST00000020982 4086 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col6a1Q04857 Gm26632-201ENSMUST00000181120 1400 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Col6a1Q04857 Osgin1-206ENSMUST00000152420 2005 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col6a1Q04857 5930412G12Rik-201ENSMUST00000091324 2403 ntTSL 5 BASIC12.69□□□□□ -0.38
Col6a1Q04857 Cd276-202ENSMUST00000165365 3603 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col6a1Q04857 Tnk1-201ENSMUST00000001626 2778 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col6a1Q04857 L3mbtl2-208ENSMUST00000174229 2578 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Col6a1Q04857 Wwtr1-201ENSMUST00000029380 4697 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col6a1Q04857 Nup205-201ENSMUST00000043815 6412 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col6a1Q04857 Lrrc18-204ENSMUST00000120951 1511 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Col6a1Q04857 Schip1-202ENSMUST00000169909 1517 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Col6a1Q04857 Eif4g1-217ENSMUST00000143939 5114 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Col6a1Q04857 Foxh1-201ENSMUST00000037824 1306 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col6a1Q04857 Ildr1-201ENSMUST00000023617 3042 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 35.3 ms