Protein–RNA interactions for Protein: P27548

Cd40lg, CD40 ligand, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd40lgP27548 Pcdhga10-201ENSMUST00000193404 4732 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Cd40lgP27548 Lgr5-208ENSMUST00000173740 2508 ntTSL 5 BASIC10.63□□□□□ -0.71
Cd40lgP27548 Rasal2-204ENSMUST00000132699 4013 ntAPPRIS ALT2 TSL 5 BASIC10.63□□□□□ -0.71
Cd40lgP27548 Gm45272-203ENSMUST00000211111 1693 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Cd40lgP27548 Mxd3-201ENSMUST00000021941 1327 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Cd40lgP27548 Mcc-201ENSMUST00000089874 7858 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Cd40lgP27548 Arfgap2-201ENSMUST00000028691 2791 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Cd40lgP27548 Loxl3-201ENSMUST00000000707 4098 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Cd40lgP27548 9230105E05Rik-201ENSMUST00000161291 2250 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Cd40lgP27548 Abhd14b-207ENSMUST00000213179 1627 ntAPPRIS P1 TSL 2 BASIC10.63□□□□□ -0.71
Cd40lgP27548 Fam180a-201ENSMUST00000051176 1606 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Cd40lgP27548 Akt2-201ENSMUST00000051356 2923 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Cd40lgP27548 Lhx9-204ENSMUST00000112026 2065 ntAPPRIS P2 TSL 1 (best) BASIC10.63□□□□□ -0.71
Cd40lgP27548 Myf5-201ENSMUST00000000445 2083 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Cd40lgP27548 Tnnt3-206ENSMUST00000105944 753 ntAPPRIS ALT2 TSL 1 (best) BASIC10.63□□□□□ -0.71
Cd40lgP27548 Tnnt3-210ENSMUST00000105948 753 ntAPPRIS ALT2 TSL 1 (best) BASIC10.63□□□□□ -0.71
Cd40lgP27548 Tnnt3-212ENSMUST00000105950 1037 ntAPPRIS ALT2 TSL 5 BASIC10.63□□□□□ -0.71
Cd40lgP27548 Folr1-201ENSMUST00000106981 960 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Cd40lgP27548 Folr1-202ENSMUST00000106982 1039 ntAPPRIS P1 TSL 3 BASIC10.63□□□□□ -0.71
Cd40lgP27548 Mkl2-203ENSMUST00000115809 667 ntTSL 2 BASIC10.63□□□□□ -0.71
Cd40lgP27548 Gm11509-201ENSMUST00000117358 325 ntBASIC10.63□□□□□ -0.71
Cd40lgP27548 Gm13611-201ENSMUST00000118269 318 ntBASIC10.63□□□□□ -0.71
Cd40lgP27548 Gm11941-201ENSMUST00000119904 610 ntBASIC10.63□□□□□ -0.71
Cd40lgP27548 Gm8566-201ENSMUST00000120174 465 ntBASIC10.63□□□□□ -0.71
Cd40lgP27548 Mrps17-207ENSMUST00000121813 868 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Cd40lgP27548 B9d1os-201ENSMUST00000137010 674 ntBASIC10.63□□□□□ -0.71
Cd40lgP27548 Ubl5-206ENSMUST00000161486 794 ntTSL 2 BASIC10.63□□□□□ -0.71
Cd40lgP27548 Gm38304-201ENSMUST00000161826 600 ntTSL 3 BASIC10.63□□□□□ -0.71
Cd40lgP27548 Tnnt3-224ENSMUST00000169299 1013 ntAPPRIS ALT2 TSL 5 BASIC10.63□□□□□ -0.71
Cd40lgP27548 Gm25732-201ENSMUST00000175168 60 ntBASIC10.63□□□□□ -0.71
Cd40lgP27548 Tnnt3-226ENSMUST00000180152 1067 ntAPPRIS ALT2 TSL 5 BASIC10.63□□□□□ -0.71
Cd40lgP27548 Mir6979-201ENSMUST00000183927 56 ntBASIC10.63□□□□□ -0.71
Cd40lgP27548 Gm28778-201ENSMUST00000190734 785 ntAPPRIS P1 TSL 3 BASIC10.63□□□□□ -0.71
Cd40lgP27548 Olfr1227-ps1-201ENSMUST00000215627 928 ntBASIC10.63□□□□□ -0.71
Cd40lgP27548 AC113082.1-201ENSMUST00000217324 327 ntBASIC10.63□□□□□ -0.71
Cd40lgP27548 Gm18165-201ENSMUST00000217426 928 ntBASIC10.63□□□□□ -0.71
Cd40lgP27548 AC164573.1-201ENSMUST00000218616 963 ntTSL 5 BASIC10.63□□□□□ -0.71
Cd40lgP27548 Ift43-205ENSMUST00000222821 783 ntAPPRIS ALT2 TSL 1 (best) BASIC10.63□□□□□ -0.71
Cd40lgP27548 1700128F08Rik-201ENSMUST00000034483 1110 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Cd40lgP27548 Ugt1a10-201ENSMUST00000113142 2244 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Cd40lgP27548 Acsf3-201ENSMUST00000015160 2206 ntAPPRIS P2 TSL 5 BASIC10.63□□□□□ -0.71
Cd40lgP27548 AC159195.3-201ENSMUST00000225162 2211 ntBASIC10.63□□□□□ -0.71
Cd40lgP27548 Pcgf2-202ENSMUST00000103148 1438 ntAPPRIS P1 TSL 5 BASIC10.63□□□□□ -0.71
Cd40lgP27548 Gm29771-201ENSMUST00000193142 1423 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Cd40lgP27548 Usp14-201ENSMUST00000092096 2360 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Cd40lgP27548 4930563E18Rik-201ENSMUST00000180948 1553 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Cd40lgP27548 Surf6-201ENSMUST00000047632 2971 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Cd40lgP27548 Herpud1-201ENSMUST00000034220 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC10.63□□□□□ -0.71
Cd40lgP27548 Mcfd2-204ENSMUST00000144236 2015 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Cd40lgP27548 Borcs7-201ENSMUST00000074912 2176 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Cd40lgP27548 Ift46-201ENSMUST00000002099 4169 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Cd40lgP27548 Aknad1-202ENSMUST00000133931 2603 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Cd40lgP27548 Samd11-201ENSMUST00000179919 2610 ntAPPRIS P2 TSL 1 (best) BASIC10.63□□□□□ -0.71
Cd40lgP27548 Hbs1l-201ENSMUST00000020153 2793 ntAPPRIS ALT2 TSL 1 (best) BASIC10.63□□□□□ -0.71
Cd40lgP27548 Olfr1419-203ENSMUST00000217617 3087 ntAPPRIS P1 TSL 5 BASIC10.63□□□□□ -0.71
Cd40lgP27548 Gm14137-201ENSMUST00000069711 3067 ntAPPRIS P1 BASIC10.63□□□□□ -0.71
Cd40lgP27548 Shank2-205ENSMUST00000146006 7666 ntTSL 2 BASIC10.63□□□□□ -0.71
Cd40lgP27548 Scmh1-201ENSMUST00000000087 3353 ntAPPRIS P3 TSL 1 (best) BASIC10.63□□□□□ -0.71
Cd40lgP27548 Acp5-203ENSMUST00000165735 1376 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Cd40lgP27548 Cd207-201ENSMUST00000037882 1522 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Cd40lgP27548 Gm7642-201ENSMUST00000216345 1809 ntBASIC10.63□□□□□ -0.71
Cd40lgP27548 Ccdc63-201ENSMUST00000058960 2299 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Cd40lgP27548 Myo9a-203ENSMUST00000128341 11985 ntAPPRIS ALT2 TSL 5 BASIC10.63□□□□□ -0.71
Cd40lgP27548 Hyal1-202ENSMUST00000112387 2706 ntAPPRIS ALT2 TSL 1 (best) BASIC10.63□□□□□ -0.71
Cd40lgP27548 Slc44a2-201ENSMUST00000034697 3456 ntAPPRIS P2 TSL 1 (best) BASIC10.63□□□□□ -0.71
Cd40lgP27548 Clip1-203ENSMUST00000111561 5883 ntAPPRIS ALT2 TSL 5 BASIC10.63□□□□□ -0.71
Cd40lgP27548 Arhgap24-206ENSMUST00000112854 2991 ntTSL 5 BASIC10.62□□□□□ -0.71
Cd40lgP27548 Sgk2-201ENSMUST00000018012 2693 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Cd40lgP27548 Ttc25-201ENSMUST00000006976 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Cd40lgP27548 Pdhx-201ENSMUST00000011058 2506 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Cd40lgP27548 Cd300lg-201ENSMUST00000017453 2353 ntAPPRIS P3 TSL 1 (best) BASIC10.62□□□□□ -0.71
Cd40lgP27548 Ash2l-210ENSMUST00000166078 2234 ntAPPRIS ALT2 TSL 5 BASIC10.62□□□□□ -0.71
Cd40lgP27548 Krtap10-10-201ENSMUST00000218843 1306 ntAPPRIS P1 BASIC10.62□□□□□ -0.71
Cd40lgP27548 Mfsd14b-203ENSMUST00000155487 3832 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Cd40lgP27548 Ikbip-201ENSMUST00000020149 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Cd40lgP27548 Rab14-201ENSMUST00000028238 3081 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Cd40lgP27548 Zdhhc20-205ENSMUST00000226057 2179 ntAPPRIS ALT2 BASIC10.62□□□□□ -0.71
Cd40lgP27548 Ces1d-201ENSMUST00000034172 2004 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Cd40lgP27548 Pkib-203ENSMUST00000095668 3311 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Cd40lgP27548 Fubp1-209ENSMUST00000198227 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Cd40lgP27548 Tas1r1-201ENSMUST00000030792 2863 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Cd40lgP27548 Maob-201ENSMUST00000040820 2411 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Cd40lgP27548 Chrm1-202ENSMUST00000163785 6271 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Cd40lgP27548 Hsd3b3-203ENSMUST00000107018 1443 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Cd40lgP27548 Trav13d-4-201ENSMUST00000103607 264 ntAPPRIS P1 BASIC10.62□□□□□ -0.71
Cd40lgP27548 Trav13-1-201ENSMUST00000103651 331 ntAPPRIS P1 BASIC10.62□□□□□ -0.71
Cd40lgP27548 Rpl35a-204ENSMUST00000115078 500 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Cd40lgP27548 Gm11331-201ENSMUST00000119764 288 ntBASIC10.62□□□□□ -0.71
Cd40lgP27548 Gm16686-201ENSMUST00000141816 396 ntAPPRIS P1 BASIC10.62□□□□□ -0.71
Cd40lgP27548 Gm11683-201ENSMUST00000147006 918 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Cd40lgP27548 Cd63-ps-202ENSMUST00000154992 717 ntBASIC10.62□□□□□ -0.71
Cd40lgP27548 Tmem255b-202ENSMUST00000167505 1219 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Cd40lgP27548 5430405H02Rik-202ENSMUST00000176134 1196 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Cd40lgP27548 Rpl31-202ENSMUST00000178079 487 ntAPPRIS P1 TSL 2 BASIC10.62□□□□□ -0.71
Cd40lgP27548 Gm6114-201ENSMUST00000182472 968 ntBASIC10.62□□□□□ -0.71
Cd40lgP27548 Trav13-4-dv7-202ENSMUST00000184905 264 ntAPPRIS P1 BASIC10.62□□□□□ -0.71
Cd40lgP27548 Rpl36-ps9-201ENSMUST00000196458 277 ntBASIC10.62□□□□□ -0.71
Cd40lgP27548 1700012D14Rik-202ENSMUST00000209959 629 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Cd40lgP27548 Cmtm2a-203ENSMUST00000212492 635 ntAPPRIS ALT2 TSL 3 BASIC10.62□□□□□ -0.71
Cd40lgP27548 Cct2-206ENSMUST00000219573 637 ntTSL 3 BASIC10.62□□□□□ -0.71
Retrieved 100 of 76,532 protein–RNA pairs in 49.6 ms