Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Raph1-204ENSMUST00000140485 10024 ntAPPRIS P2 TSL 5 BASIC10.84□□□□□ -0.67
Trim3Q9R1R2 Nmrk1-203ENSMUST00000159572 1706 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Trim3Q9R1R2 Pdik1l-203ENSMUST00000105877 4674 ntTSL 5 BASIC10.84□□□□□ -0.67
Trim3Q9R1R2 Fxyd5-212ENSMUST00000162733 2998 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
Trim3Q9R1R2 Tcf4-240ENSMUST00000201781 2779 ntTSL 5 BASIC10.83□□□□□ -0.68
Trim3Q9R1R2 Sash3-201ENSMUST00000033427 2677 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Trim3Q9R1R2 Metap2-201ENSMUST00000047910 4424 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Trim3Q9R1R2 5031434O11Rik-201ENSMUST00000180404 3731 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
Trim3Q9R1R2 Gpr173-201ENSMUST00000070316 4855 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Trim3Q9R1R2 Son-203ENSMUST00000117633 8731 ntAPPRIS ALT2 TSL 5 BASIC10.83□□□□□ -0.68
Trim3Q9R1R2 Gm12200-201ENSMUST00000144876 1858 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
Trim3Q9R1R2 Pou1f1-201ENSMUST00000004964 1773 ntTSL 5 BASIC10.83□□□□□ -0.68
Trim3Q9R1R2 Olfr1419-202ENSMUST00000213954 2918 ntAPPRIS P1 TSL 5 BASIC10.83□□□□□ -0.68
Trim3Q9R1R2 Slc12a7-201ENSMUST00000017900 5142 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Trim3Q9R1R2 Myh13-203ENSMUST00000180845 5991 ntAPPRIS P1 TSL 5 BASIC10.83□□□□□ -0.68
Trim3Q9R1R2 Ctnnal1-201ENSMUST00000045142 3664 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Trim3Q9R1R2 Mff-209ENSMUST00000160972 1358 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
Trim3Q9R1R2 Fubp1-209ENSMUST00000198227 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.68
Trim3Q9R1R2 Col9a1-202ENSMUST00000088349 3059 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
Trim3Q9R1R2 Timm10b-204ENSMUST00000106784 494 ntTSL 3 BASIC10.83□□□□□ -0.68
Trim3Q9R1R2 Slc45a2-201ENSMUST00000117100 2983 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Trim3Q9R1R2 Gm13035-201ENSMUST00000117496 342 ntBASIC10.83□□□□□ -0.68
Trim3Q9R1R2 Gm12857-201ENSMUST00000117678 592 ntBASIC10.83□□□□□ -0.68
Trim3Q9R1R2 Gm12501-201ENSMUST00000119163 529 ntBASIC10.83□□□□□ -0.68
Trim3Q9R1R2 Gm15004-201ENSMUST00000119192 630 ntBASIC10.83□□□□□ -0.68
Trim3Q9R1R2 Gm11660-201ENSMUST00000120955 412 ntBASIC10.83□□□□□ -0.68
Trim3Q9R1R2 Gm14396-201ENSMUST00000126966 548 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
Trim3Q9R1R2 Pabpc1l2a-ps-201ENSMUST00000128361 513 ntBASIC10.83□□□□□ -0.68
Trim3Q9R1R2 Mcfd2-205ENSMUST00000145895 751 ntTSL 2 BASIC10.83□□□□□ -0.68
Trim3Q9R1R2 Gm1667-201ENSMUST00000151651 558 ntTSL 3 BASIC10.83□□□□□ -0.68
Trim3Q9R1R2 Cd63-ps-202ENSMUST00000154992 717 ntBASIC10.83□□□□□ -0.68
Trim3Q9R1R2 Chtf8-203ENSMUST00000176090 615 ntTSL 5 BASIC10.83□□□□□ -0.68
Trim3Q9R1R2 3110045C21Rik-201ENSMUST00000180638 1135 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
Trim3Q9R1R2 Gm29539-201ENSMUST00000188031 758 ntTSL 3 BASIC10.83□□□□□ -0.68
Trim3Q9R1R2 A630035G10Rik-202ENSMUST00000194468 1065 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
Trim3Q9R1R2 Pcdhgb4-202ENSMUST00000195363 4665 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Trim3Q9R1R2 Gm18753-201ENSMUST00000201000 566 ntBASIC10.83□□□□□ -0.68
Trim3Q9R1R2 Atraid-205ENSMUST00000201136 894 ntAPPRIS ALT2 TSL 3 BASIC10.83□□□□□ -0.68
Trim3Q9R1R2 AC153830.1-201ENSMUST00000218522 594 ntTSL 5 BASIC10.83□□□□□ -0.68
Trim3Q9R1R2 AC131330.1-201ENSMUST00000227814 1015 ntBASIC10.83□□□□□ -0.68
Trim3Q9R1R2 Tmem258-201ENSMUST00000040372 606 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Trim3Q9R1R2 Mfsd4b5-202ENSMUST00000073618 2978 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
Trim3Q9R1R2 Lpar1-203ENSMUST00000107571 3543 ntAPPRIS P3 TSL 5 BASIC10.83□□□□□ -0.68
Trim3Q9R1R2 Nhlrc3-201ENSMUST00000056749 5047 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Trim3Q9R1R2 Zfp108-202ENSMUST00000205982 2577 ntAPPRIS P2 TSL 1 (best) BASIC10.83□□□□□ -0.68
Trim3Q9R1R2 Cdc20b-201ENSMUST00000109244 1620 ntAPPRIS P2 TSL 5 BASIC10.83□□□□□ -0.68
Trim3Q9R1R2 Cdc20b-203ENSMUST00000181117 1608 ntAPPRIS ALT2 TSL 5 BASIC10.83□□□□□ -0.68
Trim3Q9R1R2 Ddx11-205ENSMUST00000224497 4141 ntAPPRIS ALT2 BASIC10.83□□□□□ -0.68
Trim3Q9R1R2 Lef1-201ENSMUST00000029611 3482 ntAPPRIS P2 TSL 1 (best) BASIC10.83□□□□□ -0.68
Trim3Q9R1R2 4932443L11Rik-202ENSMUST00000177130 2827 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
Trim3Q9R1R2 Cd207-201ENSMUST00000037882 1522 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Trim3Q9R1R2 Rbpsuh-rs3-201ENSMUST00000182751 1441 ntBASIC10.83□□□□□ -0.68
Trim3Q9R1R2 6030466F02Rik-201ENSMUST00000212339 1434 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
Trim3Q9R1R2 Aoc2-201ENSMUST00000041095 2543 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Trim3Q9R1R2 Gm43807-201ENSMUST00000200678 1781 ntBASIC10.82□□□□□ -0.68
Trim3Q9R1R2 Btnl7-ps-201ENSMUST00000023469 1763 ntBASIC10.82□□□□□ -0.68
Trim3Q9R1R2 Gm33677-201ENSMUST00000220074 2765 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Trim3Q9R1R2 Mlc1-201ENSMUST00000042594 2783 ntAPPRIS P2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Trim3Q9R1R2 Fam110b-201ENSMUST00000054857 3210 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Trim3Q9R1R2 Sox9-201ENSMUST00000000579 4135 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Trim3Q9R1R2 Gm37613-201ENSMUST00000195677 3580 ntBASIC10.82□□□□□ -0.68
Trim3Q9R1R2 Zbtb45-205ENSMUST00000210282 3908 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Trim3Q9R1R2 4930563E18Rik-201ENSMUST00000180948 1553 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Trim3Q9R1R2 Gm37580-201ENSMUST00000192408 2800 ntBASIC10.82□□□□□ -0.68
Trim3Q9R1R2 Mindy1-201ENSMUST00000039537 2800 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Trim3Q9R1R2 Gm12915-201ENSMUST00000131381 1499 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Trim3Q9R1R2 Katnal2-207ENSMUST00000137354 1482 ntTSL 5 BASIC10.82□□□□□ -0.68
Trim3Q9R1R2 Arg1-201ENSMUST00000020161 1477 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Trim3Q9R1R2 Ank2-221ENSMUST00000182994 2715 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Trim3Q9R1R2 Tmcc2-203ENSMUST00000132435 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Trim3Q9R1R2 Ttpa-201ENSMUST00000098244 3053 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Trim3Q9R1R2 Slc36a4-201ENSMUST00000061568 6539 ntAPPRIS P2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Trim3Q9R1R2 Pex11g-201ENSMUST00000004686 2870 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Trim3Q9R1R2 Pcgf2-203ENSMUST00000103149 817 ntTSL 5 BASIC10.82□□□□□ -0.68
Trim3Q9R1R2 Ndufa3-202ENSMUST00000108644 351 ntTSL 3 BASIC10.82□□□□□ -0.68
Trim3Q9R1R2 Gm14724-201ENSMUST00000118400 537 ntBASIC10.82□□□□□ -0.68
Trim3Q9R1R2 Gm12201-201ENSMUST00000120657 1234 ntBASIC10.82□□□□□ -0.68
Trim3Q9R1R2 Bcas3os2-201ENSMUST00000134305 661 ntTSL 5 BASIC10.82□□□□□ -0.68
Trim3Q9R1R2 Arid3b-204ENSMUST00000164010 1259 ntTSL 5 BASIC10.82□□□□□ -0.68
Trim3Q9R1R2 Tmem40-205ENSMUST00000166254 811 ntAPPRIS P3 TSL 5 BASIC10.82□□□□□ -0.68
Trim3Q9R1R2 Rhox5-201ENSMUST00000179626 633 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Trim3Q9R1R2 Gm9192-201ENSMUST00000183221 985 ntBASIC10.82□□□□□ -0.68
Trim3Q9R1R2 Gm4482-201ENSMUST00000200876 742 ntBASIC10.82□□□□□ -0.68
Trim3Q9R1R2 Gm10069-203ENSMUST00000204081 907 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Trim3Q9R1R2 Gm44968-201ENSMUST00000207652 1171 ntTSL 5 BASIC10.82□□□□□ -0.68
Trim3Q9R1R2 Gm5369-201ENSMUST00000217499 588 ntBASIC10.82□□□□□ -0.68
Trim3Q9R1R2 Gm9797-202ENSMUST00000218003 294 ntBASIC10.82□□□□□ -0.68
Trim3Q9R1R2 1700011B04Rik-212ENSMUST00000223526 889 ntTSL 5 BASIC10.82□□□□□ -0.68
Trim3Q9R1R2 Mia-201ENSMUST00000071986 566 ntAPPRIS P2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Trim3Q9R1R2 Sh3tc2-201ENSMUST00000051720 4536 ntAPPRIS P1 TSL 2 BASIC10.82□□□□□ -0.68
Trim3Q9R1R2 Slit2-202ENSMUST00000170109 7758 ntAPPRIS ALT2 TSL 5 BASIC10.82□□□□□ -0.68
Trim3Q9R1R2 Slit2-217ENSMUST00000174421 7785 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Trim3Q9R1R2 Olfr46-203ENSMUST00000214180 7750 ntAPPRIS ALT2 TSL 5 BASIC10.82□□□□□ -0.68
Trim3Q9R1R2 Cd2bp2-207ENSMUST00000206026 2906 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Trim3Q9R1R2 Jpt2-201ENSMUST00000024981 2933 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Trim3Q9R1R2 Ugt1a10-201ENSMUST00000113142 2244 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Trim3Q9R1R2 Ccl22-201ENSMUST00000034231 2216 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Trim3Q9R1R2 Bod1l-201ENSMUST00000050556 10540 ntAPPRIS P3 TSL 5 BASIC10.82□□□□□ -0.68
Trim3Q9R1R2 Adgre5-203ENSMUST00000109802 2867 ntAPPRIS ALT2 TSL 5 BASIC10.82□□□□□ -0.68
Trim3Q9R1R2 Celf4-201ENSMUST00000025117 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Retrieved 100 of 76,532 protein–RNA pairs in 42.1 ms