Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Phf21a-206ENSMUST00000111292 2461 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
Scn11aQ9R053 Trim45-204ENSMUST00000134993 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Scn11aQ9R053 Wdr90-201ENSMUST00000079461 5991 ntAPPRIS P2 TSL 5 BASIC13.41□□□□□ -0.26
Scn11aQ9R053 Ttll1-201ENSMUST00000016897 2057 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Scn11aQ9R053 Qrfpr-203ENSMUST00000197447 1690 ntTSL 5 BASIC13.41□□□□□ -0.26
Scn11aQ9R053 Tnfrsf13b-201ENSMUST00000010286 2556 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Scn11aQ9R053 Vrtn-201ENSMUST00000095551 3028 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Scn11aQ9R053 Mroh1-202ENSMUST00000096385 5268 ntAPPRIS P4 TSL 1 (best) BASIC13.41□□□□□ -0.26
Scn11aQ9R053 Kdm7a-201ENSMUST00000002305 9566 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Scn11aQ9R053 Med12l-203ENSMUST00000040846 3747 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Scn11aQ9R053 Gm11525-201ENSMUST00000134436 2804 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Scn11aQ9R053 Adamts7-208ENSMUST00000167122 5338 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
Scn11aQ9R053 Platr19-201ENSMUST00000171380 1466 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Scn11aQ9R053 Mastl-201ENSMUST00000028119 5590 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Scn11aQ9R053 6430548M08Rik-201ENSMUST00000034281 5564 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
Scn11aQ9R053 Terf2ip-201ENSMUST00000052138 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Scn11aQ9R053 Atxn7l3b-201ENSMUST00000099276 3566 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
Scn11aQ9R053 Tspear-201ENSMUST00000092366 2446 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Scn11aQ9R053 4930578M01Rik-201ENSMUST00000180490 907 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Scn11aQ9R053 Gm43506-201ENSMUST00000200675 753 ntBASIC13.41□□□□□ -0.26
Scn11aQ9R053 Gm45609-204ENSMUST00000209837 1207 ntTSL 5 BASIC13.41□□□□□ -0.26
Scn11aQ9R053 Ccdc114-205ENSMUST00000211367 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Scn11aQ9R053 AC154461.3-201ENSMUST00000224831 573 ntBASIC13.41□□□□□ -0.26
Scn11aQ9R053 Olfr963-201ENSMUST00000073433 936 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
Scn11aQ9R053 Galntl6-202ENSMUST00000098757 2210 ntTSL 5 BASIC13.41□□□□□ -0.26
Scn11aQ9R053 Rubcn-201ENSMUST00000040986 5257 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
Scn11aQ9R053 Map6-205ENSMUST00000207883 3431 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
Scn11aQ9R053 Map4k2-201ENSMUST00000025897 4644 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Scn11aQ9R053 Eif4enif1-204ENSMUST00000120721 2952 ntTSL 5 BASIC13.41□□□□□ -0.26
Scn11aQ9R053 Asap1-216ENSMUST00000177083 4415 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Scn11aQ9R053 Reps1-210ENSMUST00000164556 2537 ntAPPRIS ALT1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Scn11aQ9R053 Gm31816-202ENSMUST00000209591 1332 ntTSL 5 BASIC13.41□□□□□ -0.26
Scn11aQ9R053 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Scn11aQ9R053 Cfap61-201ENSMUST00000116398 1561 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Scn11aQ9R053 St14-201ENSMUST00000034478 3259 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Scn11aQ9R053 Cwc25-202ENSMUST00000107579 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Scn11aQ9R053 Col7a1-201ENSMUST00000026740 9198 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Scn11aQ9R053 Slc43a1-204ENSMUST00000121114 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Scn11aQ9R053 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Scn11aQ9R053 Ikzf2-204ENSMUST00000188110 1365 ntTSL 5 BASIC13.41□□□□□ -0.26
Scn11aQ9R053 Ikzf2-208ENSMUST00000190855 1359 ntTSL 5 BASIC13.41□□□□□ -0.26
Scn11aQ9R053 Dntt-201ENSMUST00000051806 2128 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Scn11aQ9R053 Ccdc154-203ENSMUST00000182621 2402 ntAPPRIS P2 TSL 5 BASIC13.41□□□□□ -0.26
Scn11aQ9R053 Nid1-201ENSMUST00000005532 6091 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Scn11aQ9R053 Tollip-201ENSMUST00000001950 3788 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Scn11aQ9R053 Rbm14-202ENSMUST00000113793 3508 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Scn11aQ9R053 Hkdc1-201ENSMUST00000020277 3517 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Scn11aQ9R053 Ackr2-202ENSMUST00000214340 3015 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Scn11aQ9R053 Msantd1-201ENSMUST00000050535 2793 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Scn11aQ9R053 Psapl1-201ENSMUST00000052224 2548 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
Scn11aQ9R053 Kank2-201ENSMUST00000034717 5040 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Scn11aQ9R053 Nr5a2-205ENSMUST00000192929 1756 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Scn11aQ9R053 Paupar-201ENSMUST00000194826 3482 ntBASIC13.4□□□□□ -0.26
Scn11aQ9R053 Nox4-201ENSMUST00000032781 3753 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Scn11aQ9R053 Pomgnt1-205ENSMUST00000121052 2693 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
Scn11aQ9R053 Acsl1-202ENSMUST00000110371 2100 ntTSL 5 BASIC13.4□□□□□ -0.26
Scn11aQ9R053 Gm13624-201ENSMUST00000120263 462 ntBASIC13.4□□□□□ -0.26
Scn11aQ9R053 AU015836-201ENSMUST00000120624 674 ntTSL 3 BASIC13.4□□□□□ -0.26
Scn11aQ9R053 Gm15196-201ENSMUST00000121406 482 ntBASIC13.4□□□□□ -0.26
Scn11aQ9R053 B230307C23Rik-202ENSMUST00000122450 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Scn11aQ9R053 Gm16537-201ENSMUST00000161529 702 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Scn11aQ9R053 Tex33-203ENSMUST00000169575 942 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
Scn11aQ9R053 Gm8705-201ENSMUST00000180823 812 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Scn11aQ9R053 4930402C01Rik-201ENSMUST00000192586 663 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Scn11aQ9R053 Gm37851-201ENSMUST00000193871 889 ntBASIC13.4□□□□□ -0.26
Scn11aQ9R053 Gm8255-201ENSMUST00000218693 305 ntBASIC13.4□□□□□ -0.26
Scn11aQ9R053 Gm8181-201ENSMUST00000062242 669 ntBASIC13.4□□□□□ -0.26
Scn11aQ9R053 Aven-202ENSMUST00000099588 791 ntAPPRIS ALT2 TSL 3 BASIC13.4□□□□□ -0.26
Scn11aQ9R053 Brd3-210ENSMUST00000164296 2791 ntAPPRIS P3 TSL 5 BASIC13.4□□□□□ -0.26
Scn11aQ9R053 Pds5b-208ENSMUST00000202170 6598 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
Scn11aQ9R053 Kcnq2-217ENSMUST00000149964 8209 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Scn11aQ9R053 Adgrl1-210ENSMUST00000152978 5734 ntTSL 5 BASIC13.4□□□□□ -0.26
Scn11aQ9R053 Gm19792-201ENSMUST00000222522 2021 ntTSL 5 BASIC13.4□□□□□ -0.26
Scn11aQ9R053 Zfp189-202ENSMUST00000107696 2965 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Scn11aQ9R053 Rbm33-201ENSMUST00000030920 3955 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Scn11aQ9R053 E230029C05Rik-203ENSMUST00000208028 2066 ntBASIC13.4□□□□□ -0.26
Scn11aQ9R053 Ankzf1-208ENSMUST00000152233 2739 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Scn11aQ9R053 AC159810.1-201ENSMUST00000214838 1480 ntBASIC13.4□□□□□ -0.26
Scn11aQ9R053 Gm37542-201ENSMUST00000192563 2832 ntBASIC13.4□□□□□ -0.26
Scn11aQ9R053 Akap3-201ENSMUST00000095440 3153 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Scn11aQ9R053 Anxa3-205ENSMUST00000198631 1523 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Scn11aQ9R053 Ptn-202ENSMUST00000201321 2558 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Scn11aQ9R053 Socs5-201ENSMUST00000041369 4392 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Scn11aQ9R053 Ighv1-5-201ENSMUST00000103494 294 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
Scn11aQ9R053 Gm5944-201ENSMUST00000118182 1001 ntBASIC13.4□□□□□ -0.26
Scn11aQ9R053 Gm13039-201ENSMUST00000118638 794 ntBASIC13.4□□□□□ -0.26
Scn11aQ9R053 Gm12666-201ENSMUST00000123179 764 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
Scn11aQ9R053 Tpi1-203ENSMUST00000149610 802 ntTSL 2 BASIC13.4□□□□□ -0.26
Scn11aQ9R053 Gm18733-202ENSMUST00000174447 401 ntBASIC13.4□□□□□ -0.26
Scn11aQ9R053 Mir6953-201ENSMUST00000184745 68 ntBASIC13.4□□□□□ -0.26
Scn11aQ9R053 Gm8384-201ENSMUST00000190905 704 ntBASIC13.4□□□□□ -0.26
Scn11aQ9R053 Gm43997-201ENSMUST00000203986 1005 ntBASIC13.4□□□□□ -0.26
Scn11aQ9R053 Rp9-204ENSMUST00000216973 796 ntAPPRIS ALT2 TSL 3 BASIC13.4□□□□□ -0.26
Scn11aQ9R053 Tex46-201ENSMUST00000046647 683 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Scn11aQ9R053 Ido1-202ENSMUST00000110667 1656 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Scn11aQ9R053 Ptchd3-201ENSMUST00000036690 3194 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Scn11aQ9R053 Olfr648-202ENSMUST00000216612 2929 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
Scn11aQ9R053 AC153524.2-201ENSMUST00000218351 1375 ntTSL 5 BASIC13.39□□□□□ -0.27
Scn11aQ9R053 Colec11-201ENSMUST00000036136 1423 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Scn11aQ9R053 Eif3d-201ENSMUST00000100484 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 40.4 ms