Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Gm10912-201ENSMUST00000104891 1661 ntAPPRIS P1 BASIC11.33□□□□□ -0.6
Lima1Q9ERG0 Ddx54-201ENSMUST00000031598 4322 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Lima1Q9ERG0 Tiam1-203ENSMUST00000114122 4596 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Lima1Q9ERG0 Fam170a-201ENSMUST00000039121 1342 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Lima1Q9ERG0 Socs6-201ENSMUST00000070116 6036 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Lima1Q9ERG0 Lclat1-201ENSMUST00000067545 4467 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Lima1Q9ERG0 Ttll5-202ENSMUST00000040273 4147 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
Lima1Q9ERG0 Gm26868-201ENSMUST00000181927 2655 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Lima1Q9ERG0 Numa1-201ENSMUST00000084852 7180 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lima1Q9ERG0 Gm26811-201ENSMUST00000181258 5485 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Lima1Q9ERG0 Gm11033-203ENSMUST00000156185 2321 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Lima1Q9ERG0 Magee2-201ENSMUST00000033575 2316 ntAPPRIS P1 BASIC11.32□□□□□ -0.6
Lima1Q9ERG0 Prss43-201ENSMUST00000077549 2327 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lima1Q9ERG0 Gm2464-201ENSMUST00000180838 2551 ntTSL 5 BASIC11.32□□□□□ -0.6
Lima1Q9ERG0 Zfp354a-204ENSMUST00000109122 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lima1Q9ERG0 Dctn1-203ENSMUST00000113913 4163 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Lima1Q9ERG0 Iqgap3-201ENSMUST00000071812 5756 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lima1Q9ERG0 Pnpla6-201ENSMUST00000004681 4438 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lima1Q9ERG0 Tfr2-207ENSMUST00000198866 3072 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lima1Q9ERG0 Mknk2-201ENSMUST00000003433 3065 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lima1Q9ERG0 Zswim9-201ENSMUST00000108532 3346 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
Lima1Q9ERG0 Gm45495-201ENSMUST00000200940 1700 ntBASIC11.32□□□□□ -0.6
Lima1Q9ERG0 Nexmif-202ENSMUST00000087879 10891 ntAPPRIS P2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lima1Q9ERG0 Cish-204ENSMUST00000168260 2742 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Lima1Q9ERG0 Slc17a5-201ENSMUST00000052441 3236 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lima1Q9ERG0 Ppat-202ENSMUST00000140076 3981 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lima1Q9ERG0 Rxrg-201ENSMUST00000015987 2110 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lima1Q9ERG0 CT025681.1-201ENSMUST00000225453 1855 ntBASIC11.32□□□□□ -0.6
Lima1Q9ERG0 Asb6-201ENSMUST00000041726 4147 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lima1Q9ERG0 Tnpo3-201ENSMUST00000012679 4251 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lima1Q9ERG0 Cdh15-201ENSMUST00000034443 3251 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lima1Q9ERG0 Gm13684-201ENSMUST00000152569 2264 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Lima1Q9ERG0 Hspa5-201ENSMUST00000028222 3672 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lima1Q9ERG0 Megf11-202ENSMUST00000093829 3652 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Lima1Q9ERG0 Rapgef2-206ENSMUST00000195708 6964 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
Lima1Q9ERG0 Stx7-205ENSMUST00000220041 3435 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lima1Q9ERG0 Myo18a-211ENSMUST00000130627 6202 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
Lima1Q9ERG0 Csnk1a1-204ENSMUST00000165123 4083 ntAPPRIS P2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lima1Q9ERG0 Nfkbiz-202ENSMUST00000096026 4067 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lima1Q9ERG0 Sgk2-201ENSMUST00000018012 2693 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lima1Q9ERG0 Prox1os-201ENSMUST00000110279 828 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Lima1Q9ERG0 C330007P06Rik-203ENSMUST00000115249 1145 ntTSL 5 BASIC11.32□□□□□ -0.6
Lima1Q9ERG0 Gm13869-201ENSMUST00000146978 1054 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Lima1Q9ERG0 Gm29585-203ENSMUST00000188089 835 ntTSL 5 BASIC11.32□□□□□ -0.6
Lima1Q9ERG0 Gm32999-201ENSMUST00000192693 562 ntBASIC11.32□□□□□ -0.6
Lima1Q9ERG0 Psenen-203ENSMUST00000207747 669 ntAPPRIS P1 TSL 2 BASIC11.32□□□□□ -0.6
Lima1Q9ERG0 Ggps1-204ENSMUST00000221713 667 ntTSL 3 BASIC11.32□□□□□ -0.6
Lima1Q9ERG0 Clec4b2-201ENSMUST00000088455 1174 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lima1Q9ERG0 Fer1l4-201ENSMUST00000109611 6106 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
Lima1Q9ERG0 Mettl14-204ENSMUST00000174323 4202 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Lima1Q9ERG0 AC207128.2-201ENSMUST00000223708 1924 ntBASIC11.32□□□□□ -0.6
Lima1Q9ERG0 Myo15b-201ENSMUST00000040703 2825 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Lima1Q9ERG0 Gm26714-201ENSMUST00000181338 1655 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Lima1Q9ERG0 Pisd-203ENSMUST00000120591 2491 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
Lima1Q9ERG0 Gm9544-201ENSMUST00000223349 2482 ntBASIC11.32□□□□□ -0.6
Lima1Q9ERG0 Fbn2-201ENSMUST00000025497 10480 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
Lima1Q9ERG0 Bcl2l2-203ENSMUST00000133397 3813 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Lima1Q9ERG0 Fam109b-203ENSMUST00000161178 2931 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lima1Q9ERG0 Pced1a-201ENSMUST00000089581 3496 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lima1Q9ERG0 Henmt1-205ENSMUST00000196533 1491 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Lima1Q9ERG0 Gm7841-201ENSMUST00000122108 1629 ntBASIC11.31□□□□□ -0.6
Lima1Q9ERG0 Otud7b-202ENSMUST00000090785 8101 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Lima1Q9ERG0 Pck2-207ENSMUST00000226519 4625 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
Lima1Q9ERG0 AC174678.2-201ENSMUST00000156420 3275 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
Lima1Q9ERG0 Kat7-205ENSMUST00000107734 3560 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Lima1Q9ERG0 Etfrf1-207ENSMUST00000111726 1374 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Lima1Q9ERG0 Kir3dl2-202ENSMUST00000113108 1932 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Lima1Q9ERG0 Ccr4-202ENSMUST00000215425 1382 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Lima1Q9ERG0 Tesk2-201ENSMUST00000045542 3033 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Lima1Q9ERG0 Limd1-201ENSMUST00000026269 4848 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Lima1Q9ERG0 Papss1-205ENSMUST00000199878 2648 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Lima1Q9ERG0 Riox2-206ENSMUST00000160571 2244 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Lima1Q9ERG0 Megf11-203ENSMUST00000118485 3944 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
Lima1Q9ERG0 Asb7-202ENSMUST00000124899 4928 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Lima1Q9ERG0 Ces2e-201ENSMUST00000034355 2699 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Lima1Q9ERG0 Colq-201ENSMUST00000112027 2837 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Lima1Q9ERG0 Ccdc28b-202ENSMUST00000106035 821 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Lima1Q9ERG0 Ypel3-202ENSMUST00000106356 785 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
Lima1Q9ERG0 Pdlim2-205ENSMUST00000129174 729 ntTSL 2 BASIC11.31□□□□□ -0.6
Lima1Q9ERG0 Gm14019-201ENSMUST00000131514 403 ntTSL 3 BASIC11.31□□□□□ -0.6
Lima1Q9ERG0 Gm15276-201ENSMUST00000145953 498 ntBASIC11.31□□□□□ -0.6
Lima1Q9ERG0 Gm12907-201ENSMUST00000148027 507 ntTSL 2 BASIC11.31□□□□□ -0.6
Lima1Q9ERG0 Gm14809-201ENSMUST00000152025 695 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Lima1Q9ERG0 Gm20636-201ENSMUST00000176660 707 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Lima1Q9ERG0 Gm26542-201ENSMUST00000180443 1235 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Lima1Q9ERG0 Hax1-205ENSMUST00000197767 1092 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
Lima1Q9ERG0 Pcbd1-201ENSMUST00000020298 789 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Lima1Q9ERG0 Gm33104-201ENSMUST00000214178 1010 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Lima1Q9ERG0 CT571245.2-201ENSMUST00000218421 305 ntBASIC11.31□□□□□ -0.6
Lima1Q9ERG0 Scgb3a2-201ENSMUST00000043803 842 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Lima1Q9ERG0 Adam8-202ENSMUST00000106069 3117 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
Lima1Q9ERG0 Adam8-201ENSMUST00000026546 3100 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Lima1Q9ERG0 1700088E04Rik-212ENSMUST00000190959 1403 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
Lima1Q9ERG0 Mybpc3-203ENSMUST00000169776 4163 ntAPPRIS P2 TSL 5 BASIC11.31□□□□□ -0.6
Lima1Q9ERG0 AC129931.1-201ENSMUST00000228865 1861 ntBASIC11.31□□□□□ -0.6
Lima1Q9ERG0 Ift88os-201ENSMUST00000149702 2016 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Lima1Q9ERG0 Pex26-202ENSMUST00000118234 3778 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Lima1Q9ERG0 Dnajb12-204ENSMUST00000146590 3070 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Lima1Q9ERG0 Nfe2l1-212ENSMUST00000169828 3530 ntTSL 2 BASIC11.31□□□□□ -0.6
Lima1Q9ERG0 Tectb-202ENSMUST00000120936 1349 ntTSL 5 BASIC11.31□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 38.9 ms