Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Zfp593-201ENSMUST00000030644 1994 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col28a1Q2UY11 Cyb5r3-202ENSMUST00000162178 2547 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Col28a1Q2UY11 Pcdhga6-201ENSMUST00000195823 4733 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col28a1Q2UY11 Brat1-201ENSMUST00000041588 3333 ntAPPRIS P3 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col28a1Q2UY11 Tmem8b-209ENSMUST00000167153 4101 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col28a1Q2UY11 Gm17089-201ENSMUST00000171098 1394 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Col28a1Q2UY11 Gmeb1-201ENSMUST00000030733 2485 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col28a1Q2UY11 1300017J02Rik-202ENSMUST00000123530 1874 ntTSL 5 BASIC11.17□□□□□ -0.62
Col28a1Q2UY11 2700068H02Rik-201ENSMUST00000137882 1872 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Col28a1Q2UY11 Tubb2a-ps2-201ENSMUST00000221547 1339 ntBASIC11.17□□□□□ -0.62
Col28a1Q2UY11 Ap1s2-203ENSMUST00000112294 3199 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Col28a1Q2UY11 Trpc6-203ENSMUST00000217462 3168 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Col28a1Q2UY11 Sirt2-209ENSMUST00000170068 1585 ntTSL 5 BASIC11.17□□□□□ -0.62
Col28a1Q2UY11 Kbtbd12-206ENSMUST00000184878 3351 ntTSL 5 BASIC11.17□□□□□ -0.62
Col28a1Q2UY11 4933413J09Rik-202ENSMUST00000059648 3387 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Col28a1Q2UY11 Vwa1-201ENSMUST00000042196 3623 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col28a1Q2UY11 Zbtb21-201ENSMUST00000052089 5410 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Col28a1Q2UY11 Papln-202ENSMUST00000121733 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col28a1Q2UY11 Tfr2-207ENSMUST00000198866 3072 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col28a1Q2UY11 Pcdhb14-201ENSMUST00000052387 8695 ntAPPRIS P1 BASIC11.17□□□□□ -0.62
Col28a1Q2UY11 Cdk2ap1-204ENSMUST00000111474 1286 ntAPPRIS ALT1 TSL 2 BASIC11.17□□□□□ -0.62
Col28a1Q2UY11 Cd27-203ENSMUST00000112282 588 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Col28a1Q2UY11 Lamr1-ps1-201ENSMUST00000119759 874 ntBASIC11.17□□□□□ -0.62
Col28a1Q2UY11 Gm11331-201ENSMUST00000119764 288 ntBASIC11.17□□□□□ -0.62
Col28a1Q2UY11 Gm454-201ENSMUST00000160126 751 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Col28a1Q2UY11 Gm17105-201ENSMUST00000163715 652 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Col28a1Q2UY11 Gm3625-201ENSMUST00000170816 102 ntAPPRIS P1 BASIC11.17□□□□□ -0.62
Col28a1Q2UY11 Gm26740-201ENSMUST00000180456 358 ntTSL 3 BASIC11.17□□□□□ -0.62
Col28a1Q2UY11 Gm19744-202ENSMUST00000186135 948 ntTSL 5 BASIC11.17□□□□□ -0.62
Col28a1Q2UY11 Psenen-203ENSMUST00000207747 669 ntAPPRIS P1 TSL 2 BASIC11.17□□□□□ -0.62
Col28a1Q2UY11 Trappc4-206ENSMUST00000217163 1185 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Col28a1Q2UY11 Abhd14b-210ENSMUST00000217496 631 ntTSL 5 BASIC11.17□□□□□ -0.62
Col28a1Q2UY11 Pin1-201ENSMUST00000034689 3843 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col28a1Q2UY11 Agrp-201ENSMUST00000005849 661 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col28a1Q2UY11 Ccdc70-202ENSMUST00000070649 961 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col28a1Q2UY11 Tnni3-201ENSMUST00000098859 912 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col28a1Q2UY11 Erlin2-201ENSMUST00000033873 4838 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col28a1Q2UY11 Gm40377-201ENSMUST00000204604 2015 ntBASIC11.17□□□□□ -0.62
Col28a1Q2UY11 Dcaf4-201ENSMUST00000021645 2008 ntAPPRIS P2 TSL 5 BASIC11.17□□□□□ -0.62
Col28a1Q2UY11 Preb-201ENSMUST00000074840 6300 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col28a1Q2UY11 A130077B15Rik-201ENSMUST00000219429 2547 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Col28a1Q2UY11 Isl1-201ENSMUST00000036060 2516 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col28a1Q2UY11 Cep76-201ENSMUST00000097542 3979 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col28a1Q2UY11 Cntn4-203ENSMUST00000113258 2464 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Col28a1Q2UY11 Bpgm-201ENSMUST00000045372 2220 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col28a1Q2UY11 Kcnmb3-201ENSMUST00000164954 1715 ntAPPRIS P1 TSL 5 BASIC11.17□□□□□ -0.62
Col28a1Q2UY11 Rab3gap2-204ENSMUST00000194740 4418 ntAPPRIS ALT2 TSL 5 BASIC11.17□□□□□ -0.62
Col28a1Q2UY11 Tube1-201ENSMUST00000019991 2929 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col28a1Q2UY11 Ptpru-202ENSMUST00000097860 3365 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Col28a1Q2UY11 Zscan10-205ENSMUST00000120967 2609 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Col28a1Q2UY11 Gm43154-214ENSMUST00000211225 1420 ntTSL 5 BASIC11.17□□□□□ -0.62
Col28a1Q2UY11 H2afv-202ENSMUST00000109737 1633 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col28a1Q2UY11 Slc38a11-201ENSMUST00000112420 1606 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col28a1Q2UY11 4930554G24Rik-201ENSMUST00000126260 1603 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Col28a1Q2UY11 Ppara-201ENSMUST00000057979 2063 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col28a1Q2UY11 Tmem135-202ENSMUST00000117852 2986 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Col28a1Q2UY11 Gm20755-201ENSMUST00000196893 1827 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Col28a1Q2UY11 Baiap3-206ENSMUST00000182825 3862 ntAPPRIS ALT2 TSL 5 BASIC11.16□□□□□ -0.62
Col28a1Q2UY11 Slc9a8-201ENSMUST00000047815 4521 ntAPPRIS P3 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col28a1Q2UY11 4931429L15Rik-201ENSMUST00000159565 2037 ntAPPRIS P1 TSL 2 BASIC11.16□□□□□ -0.62
Col28a1Q2UY11 Gm43937-201ENSMUST00000204640 3122 ntBASIC11.16□□□□□ -0.62
Col28a1Q2UY11 Adh6a-202ENSMUST00000106247 1341 ntAPPRIS P2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col28a1Q2UY11 Mageb4-202ENSMUST00000113969 2403 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col28a1Q2UY11 Gm13404-201ENSMUST00000156633 1960 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Col28a1Q2UY11 Sema5b-201ENSMUST00000050625 4350 ntAPPRIS P2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col28a1Q2UY11 Gm10787-201ENSMUST00000099552 1548 ntTSL 2 BASIC11.16□□□□□ -0.62
Col28a1Q2UY11 Rab11fip4os1-201ENSMUST00000145652 2187 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Col28a1Q2UY11 Myo1b-201ENSMUST00000018561 4767 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col28a1Q2UY11 Derl2-206ENSMUST00000143850 3666 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col28a1Q2UY11 U2af1l4-237ENSMUST00000167042 3007 ntAPPRIS P5 TSL 2 BASIC11.16□□□□□ -0.62
Col28a1Q2UY11 Gm26823-201ENSMUST00000181425 2361 ntTSL 5 BASIC11.16□□□□□ -0.62
Col28a1Q2UY11 Spata13-207ENSMUST00000160973 7467 ntAPPRIS P3 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col28a1Q2UY11 Gm45532-201ENSMUST00000210342 3620 ntBASIC11.16□□□□□ -0.62
Col28a1Q2UY11 Trav13d-4-201ENSMUST00000103607 264 ntAPPRIS P1 BASIC11.16□□□□□ -0.62
Col28a1Q2UY11 Cdc26-202ENSMUST00000107459 654 ntAPPRIS P1 TSL 2 BASIC11.16□□□□□ -0.62
Col28a1Q2UY11 Cstl1-202ENSMUST00000109954 454 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Col28a1Q2UY11 Gm6370-201ENSMUST00000110611 1142 ntAPPRIS P2 TSL 5 BASIC11.16□□□□□ -0.62
Col28a1Q2UY11 Tmsb10-201ENSMUST00000114048 623 ntAPPRIS P1 TSL 3 BASIC11.16□□□□□ -0.62
Col28a1Q2UY11 Rpsa-ps12-201ENSMUST00000120596 892 ntBASIC11.16□□□□□ -0.62
Col28a1Q2UY11 Gm13388-201ENSMUST00000126659 425 ntTSL 3 BASIC11.16□□□□□ -0.62
Col28a1Q2UY11 Gm12298-201ENSMUST00000126999 731 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Col28a1Q2UY11 Dnajc25-204ENSMUST00000152199 1141 ntTSL 5 BASIC11.16□□□□□ -0.62
Col28a1Q2UY11 Gm20498-202ENSMUST00000164386 1043 ntTSL 2 BASIC11.16□□□□□ -0.62
Col28a1Q2UY11 Gm6309-201ENSMUST00000174320 1154 ntAPPRIS P1 TSL 5 BASIC11.16□□□□□ -0.62
Col28a1Q2UY11 Gm20470-201ENSMUST00000174654 331 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Col28a1Q2UY11 Trav13-4-dv7-202ENSMUST00000184905 264 ntAPPRIS P1 BASIC11.16□□□□□ -0.62
Col28a1Q2UY11 Eloc-207ENSMUST00000187910 620 ntTSL 2 BASIC11.16□□□□□ -0.62
Col28a1Q2UY11 2310047D07Rik-201ENSMUST00000189493 735 ntTSL 3 BASIC11.16□□□□□ -0.62
Col28a1Q2UY11 Gm8712-201ENSMUST00000221090 701 ntBASIC11.16□□□□□ -0.62
Col28a1Q2UY11 Gm46400-201ENSMUST00000222294 724 ntTSL 5 BASIC11.16□□□□□ -0.62
Col28a1Q2UY11 A1cf-202ENSMUST00000224304 2968 ntAPPRIS ALT1 BASIC11.16□□□□□ -0.62
Col28a1Q2UY11 AC113031.8-201ENSMUST00000227856 631 ntBASIC11.16□□□□□ -0.62
Col28a1Q2UY11 Mcpt1-201ENSMUST00000022836 1014 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col28a1Q2UY11 Riiad1-201ENSMUST00000029785 630 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col28a1Q2UY11 Elp5-201ENSMUST00000108594 1454 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col28a1Q2UY11 Gmppb-202ENSMUST00000112295 2702 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col28a1Q2UY11 Cyp4f17-201ENSMUST00000165999 1693 ntAPPRIS P1 TSL 5 BASIC11.16□□□□□ -0.62
Col28a1Q2UY11 Ufd1-202ENSMUST00000115578 2078 ntAPPRIS P1 TSL 5 BASIC11.16□□□□□ -0.62
Col28a1Q2UY11 Det1-202ENSMUST00000107431 1439 ntTSL 5 BASIC11.16□□□□□ -0.62
Col28a1Q2UY11 CU062626.3-201ENSMUST00000225522 1411 ntBASIC11.16□□□□□ -0.62
Retrieved 100 of 76,532 protein–RNA pairs in 45.2 ms