Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Ntrk2-204ENSMUST00000224259 3049 ntBASIC17.4■□□□□ 0.38
Cux1P53564 Slc44a4-202ENSMUST00000169230 2246 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Cux1P53564 Phactr1-206ENSMUST00000131942 2056 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Cux1P53564 Pik3r6-202ENSMUST00000102613 3225 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cux1P53564 Cngb1-203ENSMUST00000120044 3243 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
Cux1P53564 Pik3r6-201ENSMUST00000060441 3237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cux1P53564 Mir181d-201ENSMUST00000102383 72 ntBASIC17.4■□□□□ 0.38
Cux1P53564 Gm23769-201ENSMUST00000104441 121 ntBASIC17.4■□□□□ 0.38
Cux1P53564 Cidec-203ENSMUST00000113091 785 ntAPPRIS ALT1 TSL 3 BASIC17.4■□□□□ 0.38
Cux1P53564 Ppil2-202ENSMUST00000115719 838 ntTSL 2 BASIC17.4■□□□□ 0.38
Cux1P53564 Olfr29-ps1-201ENSMUST00000117959 963 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Cux1P53564 Gm8152-201ENSMUST00000120842 637 ntBASIC17.4■□□□□ 0.38
Cux1P53564 Mir1893-201ENSMUST00000122565 83 ntBASIC17.4■□□□□ 0.38
Cux1P53564 Mir99ahg-209ENSMUST00000182820 835 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Cux1P53564 Arhgef33-207ENSMUST00000224966 490 ntBASIC17.4■□□□□ 0.38
Cux1P53564 Olfr1015-201ENSMUST00000047870 1016 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Cux1P53564 Cstb-201ENSMUST00000005185 603 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cux1P53564 Olfr60-201ENSMUST00000075470 936 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Cux1P53564 Tspan8-202ENSMUST00000080630 1156 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cux1P53564 Camta1-202ENSMUST00000097774 8533 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
Cux1P53564 1700082M22Rik-201ENSMUST00000067136 2022 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Cux1P53564 Ubl5-201ENSMUST00000129414 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cux1P53564 Gm42498-201ENSMUST00000199981 1372 ntBASIC17.4■□□□□ 0.38
Cux1P53564 Sec13-201ENSMUST00000032440 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cux1P53564 Sash1-201ENSMUST00000015449 7183 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cux1P53564 CT030159.3-201ENSMUST00000222936 1481 ntTSL 5 BASIC17.4■□□□□ 0.38
Cux1P53564 Evi5l-203ENSMUST00000176149 3938 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
Cux1P53564 Scube1-203ENSMUST00000076060 3913 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cux1P53564 Gsdmc2-202ENSMUST00000188404 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Cux1P53564 Iqsec3-201ENSMUST00000046373 6840 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Cux1P53564 Arhgap12-211ENSMUST00000182383 2500 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
Cux1P53564 Cinp-201ENSMUST00000043716 2029 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cux1P53564 Rsbn1-202ENSMUST00000068879 6712 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cux1P53564 Gm996-201ENSMUST00000114217 4881 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
Cux1P53564 Tex45-201ENSMUST00000047265 1613 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Cux1P53564 Cd55b-202ENSMUST00000119432 986 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Cux1P53564 Gm9574-201ENSMUST00000173127 845 ntBASIC17.39■□□□□ 0.37
Cux1P53564 Gm42732-201ENSMUST00000202887 1197 ntBASIC17.39■□□□□ 0.37
Cux1P53564 Gm18001-201ENSMUST00000212023 688 ntBASIC17.39■□□□□ 0.37
Cux1P53564 AC158986.2-201ENSMUST00000227487 618 ntBASIC17.39■□□□□ 0.37
Cux1P53564 Ifi27-201ENSMUST00000066701 889 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cux1P53564 Gm10020-201ENSMUST00000081993 612 ntBASIC17.39■□□□□ 0.37
Cux1P53564 Rnf225-201ENSMUST00000045870 3239 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cux1P53564 Ank3-201ENSMUST00000047061 2517 ntTSL 5 BASIC17.39■□□□□ 0.37
Cux1P53564 Morf4l2-204ENSMUST00000113097 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cux1P53564 Slc25a25-202ENSMUST00000052119 3529 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Cux1P53564 Cyp27b1-201ENSMUST00000165764 2380 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cux1P53564 Ckap2-201ENSMUST00000046916 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cux1P53564 Hdac11-201ENSMUST00000041736 2653 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cux1P53564 Kdm4d-201ENSMUST00000058796 2695 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cux1P53564 AC154537.1-201ENSMUST00000226101 1304 ntBASIC17.39■□□□□ 0.37
Cux1P53564 Ptk2-201ENSMUST00000110036 4184 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cux1P53564 Fgfr1op-201ENSMUST00000024636 3077 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cux1P53564 Tubd1-203ENSMUST00000108030 1964 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Cux1P53564 Ptpn11-202ENSMUST00000100770 5599 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cux1P53564 Foxp2-207ENSMUST00000115477 6760 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cux1P53564 Trim45-204ENSMUST00000134993 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cux1P53564 Cd163l1-204ENSMUST00000209637 3210 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cux1P53564 Mir1249-201ENSMUST00000116791 98 ntBASIC17.38■□□□□ 0.37
Cux1P53564 Gm15287-201ENSMUST00000132564 751 ntTSL 2 BASIC17.38■□□□□ 0.37
Cux1P53564 Gm13027-201ENSMUST00000135858 241 ntTSL 5 BASIC17.38■□□□□ 0.37
Cux1P53564 Krtcap2-204ENSMUST00000168900 582 ntTSL 3 BASIC17.38■□□□□ 0.37
Cux1P53564 Gm29642-201ENSMUST00000186170 921 ntTSL 2 BASIC17.38■□□□□ 0.37
Cux1P53564 Platr10-202ENSMUST00000191479 818 ntBASIC17.38■□□□□ 0.37
Cux1P53564 AC099934.4-201ENSMUST00000220745 523 ntTSL 5 BASIC17.38■□□□□ 0.37
Cux1P53564 Cypt12-201ENSMUST00000029080 550 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
Cux1P53564 Synj2-202ENSMUST00000080283 4793 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cux1P53564 Ptpn2-202ENSMUST00000120934 1497 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Cux1P53564 Ackr2-202ENSMUST00000214340 3015 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cux1P53564 Fam83a-202ENSMUST00000160942 2876 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Cux1P53564 E2f7-209ENSMUST00000174857 2865 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Cux1P53564 AU022754-201ENSMUST00000180441 2976 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Cux1P53564 Slc7a4-207ENSMUST00000172164 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cux1P53564 Fhitos-201ENSMUST00000160149 1511 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Cux1P53564 Myo1d-201ENSMUST00000041065 5354 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Cux1P53564 Vgll4-201ENSMUST00000032459 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cux1P53564 Sparc-201ENSMUST00000018737 2300 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cux1P53564 Ncs1-201ENSMUST00000000199 4653 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cux1P53564 Esrrb-203ENSMUST00000110204 4196 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Cux1P53564 Gm13093-201ENSMUST00000126212 2485 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Cux1P53564 Gm24279-201ENSMUST00000104236 131 ntBASIC17.37■□□□□ 0.37
Cux1P53564 Olfr1263-201ENSMUST00000111507 1029 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Cux1P53564 Gm15886-201ENSMUST00000123155 1250 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Cux1P53564 Gm20493-201ENSMUST00000173706 213 ntBASIC17.37■□□□□ 0.37
Cux1P53564 Gm9625-201ENSMUST00000180422 955 ntBASIC17.37■□□□□ 0.37
Cux1P53564 Auts2-216ENSMUST00000185450 144 ntTSL 5 BASIC17.37■□□□□ 0.37
Cux1P53564 Cklf-210ENSMUST00000212939 737 ntAPPRIS ALT2 TSL 3 BASIC17.37■□□□□ 0.37
Cux1P53564 Atp5j2-201ENSMUST00000037056 540 ntTSL 5 BASIC17.37■□□□□ 0.37
Cux1P53564 Dcpp2-201ENSMUST00000088598 611 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cux1P53564 Lsp1-211ENSMUST00000149521 1910 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Cux1P53564 Gm38192-201ENSMUST00000194364 1847 ntBASIC17.37■□□□□ 0.37
Cux1P53564 Ubap2l-201ENSMUST00000029553 3509 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cux1P53564 Gm15965-201ENSMUST00000123318 1428 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Cux1P53564 Gm20758-201ENSMUST00000220339 2171 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Cux1P53564 Shroom3-203ENSMUST00000113055 6765 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cux1P53564 Cdc7-203ENSMUST00000117196 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cux1P53564 Ino80dos-201ENSMUST00000138611 1576 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Cux1P53564 2610028H24Rik-202ENSMUST00000105415 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cux1P53564 Fam173b-203ENSMUST00000161061 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cux1P53564 Gm7928-201ENSMUST00000181249 701 ntBASIC17.37■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 48.6 ms