Protein–RNA interactions for Protein: P27548

Cd40lg, CD40 ligand, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd40lgP27548 Ubxn10-202ENSMUST00000105810 3304 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Cd40lgP27548 Sertm1-201ENSMUST00000070342 3083 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Cd40lgP27548 Limd1-201ENSMUST00000026269 4848 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Cd40lgP27548 Cbfa2t3-203ENSMUST00000127984 7645 ntAPPRIS P3 TSL 1 (best) BASIC10.65□□□□□ -0.7
Cd40lgP27548 Arntl2-203ENSMUST00000111638 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC10.65□□□□□ -0.7
Cd40lgP27548 Gm20671-201ENSMUST00000144673 1731 ntAPPRIS P1 TSL 5 BASIC10.65□□□□□ -0.7
Cd40lgP27548 Arntl2-201ENSMUST00000080530 1740 ntAPPRIS P3 TSL 1 (best) BASIC10.65□□□□□ -0.7
Cd40lgP27548 Vwa5b2-202ENSMUST00000096197 4527 ntAPPRIS ALT2 TSL 5 BASIC10.65□□□□□ -0.7
Cd40lgP27548 Lnx1-204ENSMUST00000117388 2564 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Cd40lgP27548 Dbh-201ENSMUST00000000910 2552 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Cd40lgP27548 Cstl1-201ENSMUST00000109952 629 ntAPPRIS P1 TSL 5 BASIC10.65□□□□□ -0.7
Cd40lgP27548 Gm15004-201ENSMUST00000119192 630 ntBASIC10.65□□□□□ -0.7
Cd40lgP27548 Gm53-203ENSMUST00000143887 757 ntTSL 3 BASIC10.65□□□□□ -0.7
Cd40lgP27548 Prdx5-203ENSMUST00000149261 755 ntAPPRIS ALT2 TSL 2 BASIC10.65□□□□□ -0.7
Cd40lgP27548 Gm13115-201ENSMUST00000156438 620 ntTSL 5 BASIC10.65□□□□□ -0.7
Cd40lgP27548 Tmem40-205ENSMUST00000166254 811 ntAPPRIS P3 TSL 5 BASIC10.65□□□□□ -0.7
Cd40lgP27548 Gm26782-202ENSMUST00000181697 971 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
Cd40lgP27548 Gm9034-201ENSMUST00000182071 1005 ntBASIC10.65□□□□□ -0.7
Cd40lgP27548 Gm17087-201ENSMUST00000184183 471 ntAPPRIS P1 BASIC10.65□□□□□ -0.7
Cd40lgP27548 Gm10069-203ENSMUST00000204081 907 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
Cd40lgP27548 Emp3-203ENSMUST00000210297 601 ntAPPRIS P1 TSL 3 BASIC10.65□□□□□ -0.7
Cd40lgP27548 Rpl17-ps3-201ENSMUST00000221295 556 ntBASIC10.65□□□□□ -0.7
Cd40lgP27548 Spcs1-203ENSMUST00000226374 592 ntBASIC10.65□□□□□ -0.7
Cd40lgP27548 Gm1821-202ENSMUST00000227415 750 ntBASIC10.65□□□□□ -0.7
Cd40lgP27548 Nudt7-201ENSMUST00000066514 935 ntAPPRIS ALT2 TSL 1 (best) BASIC10.65□□□□□ -0.7
Cd40lgP27548 Atxn2l-203ENSMUST00000167759 4023 ntAPPRIS ALT2 TSL 1 (best) BASIC10.65□□□□□ -0.7
Cd40lgP27548 Slc45a4-202ENSMUST00000076224 4240 ntAPPRIS P2 TSL 1 (best) BASIC10.65□□□□□ -0.7
Cd40lgP27548 Dido1-204ENSMUST00000103055 4613 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
Cd40lgP27548 Gm44152-201ENSMUST00000205007 1691 ntBASIC10.65□□□□□ -0.7
Cd40lgP27548 Zfp286-211ENSMUST00000207597 1668 ntTSL 5 BASIC10.65□□□□□ -0.7
Cd40lgP27548 Gm9129-201ENSMUST00000218173 1689 ntBASIC10.65□□□□□ -0.7
Cd40lgP27548 Frmd4a-216ENSMUST00000176828 4355 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
Cd40lgP27548 Tmc3-201ENSMUST00000039317 6221 ntAPPRIS P2 TSL 1 (best) BASIC10.65□□□□□ -0.7
Cd40lgP27548 Kcnab2-201ENSMUST00000030768 3533 ntAPPRIS ALT1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Cd40lgP27548 Gm9796-201ENSMUST00000062249 2250 ntBASIC10.65□□□□□ -0.7
Cd40lgP27548 Grip1-216ENSMUST00000154238 2482 ntTSL 5 BASIC10.65□□□□□ -0.7
Cd40lgP27548 Mllt10-201ENSMUST00000028076 4917 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Cd40lgP27548 Fgfr1op-201ENSMUST00000024636 3077 ntAPPRIS P3 TSL 1 (best) BASIC10.65□□□□□ -0.7
Cd40lgP27548 Dgkb-205ENSMUST00000221176 1439 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
Cd40lgP27548 Mirt1-202ENSMUST00000180667 1633 ntTSL 5 BASIC10.65□□□□□ -0.7
Cd40lgP27548 Olfm4-201ENSMUST00000088735 1640 ntTSL 2 BASIC10.65□□□□□ -0.7
Cd40lgP27548 Vwf-201ENSMUST00000100941 1807 ntTSL 5 BASIC10.65□□□□□ -0.71
Cd40lgP27548 Alox12-201ENSMUST00000000329 3001 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.71
Cd40lgP27548 Ppp2r1b-202ENSMUST00000114437 3430 ntAPPRIS P2 TSL 1 (best) BASIC10.65□□□□□ -0.71
Cd40lgP27548 Snap29-201ENSMUST00000023449 3429 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.71
Cd40lgP27548 Helz-202ENSMUST00000100305 5953 ntAPPRIS ALT2 TSL 1 (best) BASIC10.65□□□□□ -0.71
Cd40lgP27548 Enpp4-201ENSMUST00000024757 4560 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.71
Cd40lgP27548 Batf2-201ENSMUST00000045042 1391 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.71
Cd40lgP27548 Notch2-201ENSMUST00000079812 10500 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Cd40lgP27548 Eef2k-203ENSMUST00000106488 2537 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Cd40lgP27548 Gm3294-201ENSMUST00000164104 7367 ntTSL 3 BASIC10.64□□□□□ -0.71
Cd40lgP27548 Mical1-202ENSMUST00000099934 3292 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Cd40lgP27548 Slc6a18-204ENSMUST00000220650 1728 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Cd40lgP27548 Rabgef1-203ENSMUST00000119797 2690 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Cd40lgP27548 Ikzf4-204ENSMUST00000222067 2688 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Cd40lgP27548 Mapkapk5-204ENSMUST00000111783 1513 ntAPPRIS ALT1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Cd40lgP27548 Kcnk2-206ENSMUST00000193319 1548 ntAPPRIS P4 TSL 1 (best) BASIC10.64□□□□□ -0.71
Cd40lgP27548 Dlgap1-214ENSMUST00000155016 4712 ntAPPRIS P3 TSL 1 (best) BASIC10.64□□□□□ -0.71
Cd40lgP27548 Med1-202ENSMUST00000092735 2627 ntAPPRIS ALT2 TSL 1 (best) BASIC10.64□□□□□ -0.71
Cd40lgP27548 Tgfbr1-201ENSMUST00000007757 5756 ntAPPRIS P3 TSL 1 (best) BASIC10.64□□□□□ -0.71
Cd40lgP27548 Rasgef1b-203ENSMUST00000146396 3339 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Cd40lgP27548 AL732309.1-201ENSMUST00000228627 2045 ntAPPRIS P1 BASIC10.64□□□□□ -0.71
Cd40lgP27548 Pxylp1-201ENSMUST00000078478 2908 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Cd40lgP27548 Oxnad1-201ENSMUST00000022462 2376 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Cd40lgP27548 Gm15954-201ENSMUST00000160746 466 ntTSL 5 BASIC10.64□□□□□ -0.71
Cd40lgP27548 H2-Q3-201ENSMUST00000172583 608 ntBASIC10.64□□□□□ -0.71
Cd40lgP27548 Gm8815-201ENSMUST00000173809 620 ntBASIC10.64□□□□□ -0.71
Cd40lgP27548 Fundc1-204ENSMUST00000176638 448 ntTSL 3 BASIC10.64□□□□□ -0.71
Cd40lgP27548 Rhox5-201ENSMUST00000179626 633 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Cd40lgP27548 Gm29233-201ENSMUST00000190311 281 ntTSL 5 BASIC10.64□□□□□ -0.71
Cd40lgP27548 Gm29264-201ENSMUST00000191240 1264 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Cd40lgP27548 AC134860.1-201ENSMUST00000224867 660 ntBASIC10.64□□□□□ -0.71
Cd40lgP27548 Ntng1-201ENSMUST00000051253 327 ntBASIC10.64□□□□□ -0.71
Cd40lgP27548 Gm15541-201ENSMUST00000147449 2713 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Cd40lgP27548 Cdc20b-201ENSMUST00000109244 1620 ntAPPRIS P2 TSL 5 BASIC10.64□□□□□ -0.71
Cd40lgP27548 Gm30648-202ENSMUST00000200648 1957 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Cd40lgP27548 Cd72-205ENSMUST00000107926 1419 ntAPPRIS P3 TSL 1 (best) BASIC10.64□□□□□ -0.71
Cd40lgP27548 6030466F02Rik-201ENSMUST00000212339 1434 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Cd40lgP27548 Cd72-203ENSMUST00000098105 1420 ntAPPRIS ALT2 TSL 1 (best) BASIC10.64□□□□□ -0.71
Cd40lgP27548 Tpm1-201ENSMUST00000030185 1797 ntAPPRIS ALT1 TSL 2 BASIC10.64□□□□□ -0.71
Cd40lgP27548 Gm19972-201ENSMUST00000218180 5664 ntBASIC10.64□□□□□ -0.71
Cd40lgP27548 Trim35-201ENSMUST00000022623 3678 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Cd40lgP27548 Dolpp1-201ENSMUST00000028209 2251 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Cd40lgP27548 Umod-201ENSMUST00000033263 2625 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Cd40lgP27548 Vmn1r45-201ENSMUST00000054202 3341 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Cd40lgP27548 Ldb3-204ENSMUST00000064098 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC10.64□□□□□ -0.71
Cd40lgP27548 Bmp5-201ENSMUST00000012281 3822 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Cd40lgP27548 Gria4-202ENSMUST00000063508 5352 ntAPPRIS P3 TSL 1 (best) BASIC10.64□□□□□ -0.71
Cd40lgP27548 Spns3-202ENSMUST00000092940 2080 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Cd40lgP27548 Sppl2b-211ENSMUST00000220091 3629 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Cd40lgP27548 Gm11494-201ENSMUST00000142279 1738 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Cd40lgP27548 Trpc6-201ENSMUST00000050433 3259 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Cd40lgP27548 Got1l1-201ENSMUST00000038174 1356 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Cd40lgP27548 Usp5-202ENSMUST00000122110 3076 ntAPPRIS ALT1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Cd40lgP27548 Ica1-204ENSMUST00000115520 1876 ntAPPRIS P2 TSL 5 BASIC10.64□□□□□ -0.71
Cd40lgP27548 Epb41l3-202ENSMUST00000112680 4073 ntAPPRIS ALT2 TSL 5 BASIC10.63□□□□□ -0.71
Cd40lgP27548 Hsd3b6-202ENSMUST00000170847 1539 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Cd40lgP27548 Slitrk3-202ENSMUST00000192477 4592 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Cd40lgP27548 Ccdc93-201ENSMUST00000036025 7274 ntAPPRIS P4 TSL 1 (best) BASIC10.63□□□□□ -0.71
Cd40lgP27548 Arhgef2-207ENSMUST00000175903 3356 ntAPPRIS ALT2 TSL 5 BASIC10.63□□□□□ -0.71
Retrieved 100 of 76,532 protein–RNA pairs in 86.4 ms