Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Gm7619-201ENSMUST00000210649 1282 ntBASIC9.34□□□□□ -0.91
Sdc1P18828 Mrto4-ps1-201ENSMUST00000220565 721 ntBASIC9.34□□□□□ -0.91
Sdc1P18828 AC160929.1-201ENSMUST00000221247 415 ntBASIC9.34□□□□□ -0.91
Sdc1P18828 AC238811.3-201ENSMUST00000225422 709 ntBASIC9.34□□□□□ -0.91
Sdc1P18828 Tex26-201ENSMUST00000031667 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC9.34□□□□□ -0.91
Sdc1P18828 Dpm3-201ENSMUST00000040824 404 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Sdc1P18828 Gm26714-201ENSMUST00000181338 1655 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Sdc1P18828 Dysf-202ENSMUST00000089595 6613 ntAPPRIS ALT2 TSL 5 BASIC9.34□□□□□ -0.91
Sdc1P18828 Olfr222-202ENSMUST00000214351 2474 ntAPPRIS P1 TSL 5 BASIC9.34□□□□□ -0.91
Sdc1P18828 Tbpl1-202ENSMUST00000127698 2873 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Sdc1P18828 Gpm6b-209ENSMUST00000112235 4480 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Sdc1P18828 Ndrg4-203ENSMUST00000080666 2738 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Sdc1P18828 Ss18l2-206ENSMUST00000215966 2316 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Sdc1P18828 Slc38a4-202ENSMUST00000166223 1908 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Sdc1P18828 Pask-201ENSMUST00000027493 5779 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Sdc1P18828 Abcg1-201ENSMUST00000024829 3610 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Sdc1P18828 D630003M21Rik-202ENSMUST00000103121 4521 ntAPPRIS ALT2 TSL 1 (best) BASIC9.34□□□□□ -0.91
Sdc1P18828 Trim36-202ENSMUST00000167364 4543 ntTSL 5 BASIC9.34□□□□□ -0.91
Sdc1P18828 Dpf2-202ENSMUST00000118623 2406 ntTSL 5 BASIC9.34□□□□□ -0.91
Sdc1P18828 Tspear-201ENSMUST00000092366 2446 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Sdc1P18828 Mov10l1-203ENSMUST00000146993 4133 ntAPPRIS ALT2 TSL 5 BASIC9.34□□□□□ -0.91
Sdc1P18828 Ddah1-202ENSMUST00000120310 2291 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Sdc1P18828 Rab2b-201ENSMUST00000022765 2906 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Sdc1P18828 Znrf1-202ENSMUST00000166859 3650 ntTSL 5 BASIC9.34□□□□□ -0.91
Sdc1P18828 Osmr-201ENSMUST00000022746 5491 ntAPPRIS P3 TSL 1 (best) BASIC9.34□□□□□ -0.91
Sdc1P18828 Ccdc136-202ENSMUST00000115275 3279 ntAPPRIS ALT2 TSL 5 BASIC9.34□□□□□ -0.91
Sdc1P18828 Gm44573-201ENSMUST00000191753 2370 ntBASIC9.34□□□□□ -0.91
Sdc1P18828 Gm43307-201ENSMUST00000199465 2371 ntBASIC9.34□□□□□ -0.91
Sdc1P18828 Gm4419-201ENSMUST00000180671 1729 ntTSL 1 (best) BASIC9.34□□□□□ -0.92
Sdc1P18828 Git1-202ENSMUST00000100812 3476 ntAPPRIS ALT2 TSL 5 BASIC9.33□□□□□ -0.92
Sdc1P18828 Zfp704-201ENSMUST00000041124 13834 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Sdc1P18828 1110028F18Rik-201ENSMUST00000183365 1341 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
Sdc1P18828 Syt7-204ENSMUST00000223586 1344 ntBASIC9.33□□□□□ -0.92
Sdc1P18828 Zkscan6-201ENSMUST00000018491 2302 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Sdc1P18828 Nme1-203ENSMUST00000135884 3181 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Sdc1P18828 Gm6831-202ENSMUST00000213025 1673 ntBASIC9.33□□□□□ -0.92
Sdc1P18828 Stat5a-201ENSMUST00000004145 3888 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Sdc1P18828 Rcbtb2-219ENSMUST00000169513 3622 ntAPPRIS ALT2 TSL 1 (best) BASIC9.33□□□□□ -0.92
Sdc1P18828 Gpi1-201ENSMUST00000038027 2884 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Sdc1P18828 Rorc-204ENSMUST00000200009 1543 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
Sdc1P18828 Cstf1-201ENSMUST00000116375 3451 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Sdc1P18828 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC9.33□□□□□ -0.92
Sdc1P18828 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC9.33□□□□□ -0.92
Sdc1P18828 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC9.33□□□□□ -0.92
Sdc1P18828 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Sdc1P18828 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC9.33□□□□□ -0.92
Sdc1P18828 Gm12129-201ENSMUST00000120104 1147 ntBASIC9.33□□□□□ -0.92
Sdc1P18828 Gm14999-201ENSMUST00000121039 624 ntBASIC9.33□□□□□ -0.92
Sdc1P18828 Hypk-204ENSMUST00000126764 961 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Sdc1P18828 Vps53-204ENSMUST00000129256 650 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
Sdc1P18828 Fbxl12os-203ENSMUST00000138471 2127 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
Sdc1P18828 Pfdn5-205ENSMUST00000166658 1062 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Sdc1P18828 4833427G06Rik-201ENSMUST00000170947 973 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Sdc1P18828 Ccdc70-201ENSMUST00000017193 1054 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Sdc1P18828 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC9.33□□□□□ -0.92
Sdc1P18828 Lce1j-202ENSMUST00000186525 703 ntAPPRIS P1 TSL 3 BASIC9.33□□□□□ -0.92
Sdc1P18828 A430027H14Rik-202ENSMUST00000192797 618 ntTSL 2 BASIC9.33□□□□□ -0.92
Sdc1P18828 Gm34086-201ENSMUST00000196486 743 ntTSL 3 BASIC9.33□□□□□ -0.92
Sdc1P18828 Gm42921-201ENSMUST00000196670 655 ntTSL 2 BASIC9.33□□□□□ -0.92
Sdc1P18828 Tmem176b-206ENSMUST00000203355 1202 ntAPPRIS P1 TSL 5 BASIC9.33□□□□□ -0.92
Sdc1P18828 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC9.33□□□□□ -0.92
Sdc1P18828 Gm32111-201ENSMUST00000207689 846 ntBASIC9.33□□□□□ -0.92
Sdc1P18828 Gm19994-201ENSMUST00000217086 586 ntBASIC9.33□□□□□ -0.92
Sdc1P18828 Gm18065-201ENSMUST00000221395 526 ntBASIC9.33□□□□□ -0.92
Sdc1P18828 AC154687.2-201ENSMUST00000223853 640 ntBASIC9.33□□□□□ -0.92
Sdc1P18828 Lce1c-201ENSMUST00000047055 724 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Sdc1P18828 AC129931.1-201ENSMUST00000228865 1861 ntBASIC9.33□□□□□ -0.92
Sdc1P18828 Dppa4-201ENSMUST00000050705 1378 ntAPPRIS ALT2 TSL 5 BASIC9.33□□□□□ -0.92
Sdc1P18828 Ddr1-203ENSMUST00000117301 3874 ntAPPRIS P3 TSL 1 (best) BASIC9.33□□□□□ -0.92
Sdc1P18828 Fkbp15-203ENSMUST00000098033 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC9.33□□□□□ -0.92
Sdc1P18828 Dcaf11-206ENSMUST00000128490 2660 ntAPPRIS P2 TSL 2 BASIC9.33□□□□□ -0.92
Sdc1P18828 Mecomos-201ENSMUST00000125611 5510 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
Sdc1P18828 Ankrd11-201ENSMUST00000098333 7995 ntAPPRIS ALT2 TSL 5 BASIC9.33□□□□□ -0.92
Sdc1P18828 Zc3h12a-201ENSMUST00000036188 2755 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Sdc1P18828 Dnmt3l-202ENSMUST00000123940 1452 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
Sdc1P18828 Gm20721-201ENSMUST00000168292 1484 ntAPPRIS P1 TSL 5 BASIC9.33□□□□□ -0.92
Sdc1P18828 Pcdhb19-201ENSMUST00000059571 7138 ntAPPRIS P1 BASIC9.33□□□□□ -0.92
Sdc1P18828 Trim34b-201ENSMUST00000106847 1827 ntAPPRIS P2 TSL 1 (best) BASIC9.33□□□□□ -0.92
Sdc1P18828 Tfdp1-204ENSMUST00000209885 2511 ntAPPRIS P3 TSL 1 (best) BASIC9.33□□□□□ -0.92
Sdc1P18828 Shroom2-201ENSMUST00000062317 6997 ntAPPRIS ALT2 TSL 1 (best) BASIC9.33□□□□□ -0.92
Sdc1P18828 C2cd5-201ENSMUST00000087485 4265 ntTSL 5 BASIC9.33□□□□□ -0.92
Sdc1P18828 Slc10a3-203ENSMUST00000114146 1902 ntAPPRIS P2 TSL 5 BASIC9.33□□□□□ -0.92
Sdc1P18828 Gm15609-201ENSMUST00000155610 2960 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
Sdc1P18828 Dusp14-201ENSMUST00000018792 1571 ntAPPRIS P1 TSL 2 BASIC9.33□□□□□ -0.92
Sdc1P18828 Hrh1-201ENSMUST00000088987 3782 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Sdc1P18828 5430400D12Rik-201ENSMUST00000181717 1690 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
Sdc1P18828 Stk17b-201ENSMUST00000027263 3293 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
Sdc1P18828 Lpo-201ENSMUST00000103177 2926 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
Sdc1P18828 Nr1i2-201ENSMUST00000023504 2553 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
Sdc1P18828 Ampd2-201ENSMUST00000078912 3368 ntAPPRIS ALT2 TSL 5 BASIC9.32□□□□□ -0.92
Sdc1P18828 Syngr2-202ENSMUST00000120928 1402 ntTSL 2 BASIC9.32□□□□□ -0.92
Sdc1P18828 Dusp11-201ENSMUST00000032071 6435 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
Sdc1P18828 Gm20715-201ENSMUST00000054781 4460 ntAPPRIS P1 TSL 2 BASIC9.32□□□□□ -0.92
Sdc1P18828 Zfp957-202ENSMUST00000161649 2751 ntAPPRIS P1 TSL 5 BASIC9.32□□□□□ -0.92
Sdc1P18828 Pklr-201ENSMUST00000047111 2787 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
Sdc1P18828 Slc45a4-207ENSMUST00000151288 7509 ntAPPRIS P2 TSL 1 (best) BASIC9.32□□□□□ -0.92
Sdc1P18828 Tro-201ENSMUST00000087253 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC9.32□□□□□ -0.92
Sdc1P18828 C130021I20Rik-201ENSMUST00000147294 3693 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
Sdc1P18828 Gm44115-201ENSMUST00000203917 2069 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
Sdc1P18828 Tchhl1-201ENSMUST00000029516 2066 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
Retrieved 100 of 76,532 protein–RNA pairs in 49.3 ms