Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Gm6040-201ENSMUST00000095430 857 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col1a1P11087 Defa3-201ENSMUST00000098893 410 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col1a1P11087 Acvrl1-205ENSMUST00000120754 3506 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Col1a1P11087 Adora1-202ENSMUST00000086465 4968 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col1a1P11087 Olfr601-203ENSMUST00000214110 2196 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Col1a1P11087 Olfr601-204ENSMUST00000217416 2195 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Col1a1P11087 A730020E08Rik-201ENSMUST00000180421 3387 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Col1a1P11087 Crybg2-213ENSMUST00000227683 5578 ntAPPRIS ALT2 BASIC13.33□□□□□ -0.28
Col1a1P11087 Gm13404-201ENSMUST00000156633 1960 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Col1a1P11087 Gm7104-201ENSMUST00000179741 2532 ntBASIC13.33□□□□□ -0.28
Col1a1P11087 Fgfr3-209ENSMUST00000164207 4150 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col1a1P11087 Sarm1-201ENSMUST00000061174 4083 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col1a1P11087 C1qtnf6-201ENSMUST00000023075 2402 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col1a1P11087 2410131K14Rik-201ENSMUST00000049138 5649 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col1a1P11087 Fcrl1-203ENSMUST00000167200 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col1a1P11087 Jup-201ENSMUST00000001592 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col1a1P11087 Zc3h6-202ENSMUST00000110320 4916 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
Col1a1P11087 Iqcc-201ENSMUST00000046675 2639 ntAPPRIS P2 TSL 2 BASIC13.32□□□□□ -0.28
Col1a1P11087 Ythdf2-203ENSMUST00000152796 4129 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col1a1P11087 Zbtb7b-203ENSMUST00000107433 3650 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col1a1P11087 Gm807-201ENSMUST00000181742 1723 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Col1a1P11087 Dip2a-201ENSMUST00000036033 6322 ntAPPRIS P2 TSL 5 BASIC13.32□□□□□ -0.28
Col1a1P11087 Incenp-201ENSMUST00000025562 3217 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col1a1P11087 Gm12337-201ENSMUST00000119634 400 ntBASIC13.32□□□□□ -0.28
Col1a1P11087 Gm12000-201ENSMUST00000132007 629 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Col1a1P11087 Tpi1-203ENSMUST00000149610 802 ntTSL 2 BASIC13.32□□□□□ -0.28
Col1a1P11087 Gm9639-201ENSMUST00000172205 678 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
Col1a1P11087 Mrip-ps-201ENSMUST00000184613 940 ntBASIC13.32□□□□□ -0.28
Col1a1P11087 Mrgprb7-ps-201ENSMUST00000190238 964 ntBASIC13.32□□□□□ -0.28
Col1a1P11087 Rpl13-ps4-201ENSMUST00000194776 628 ntBASIC13.32□□□□□ -0.28
Col1a1P11087 D5Ertd605e-201ENSMUST00000201128 1081 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Col1a1P11087 Zfp445-205ENSMUST00000214626 1220 ntTSL 5 BASIC13.32□□□□□ -0.28
Col1a1P11087 Arhgef33-210ENSMUST00000225548 456 ntBASIC13.32□□□□□ -0.28
Col1a1P11087 Plekhg4-201ENSMUST00000014927 4167 ntAPPRIS P2 TSL 5 BASIC13.32□□□□□ -0.28
Col1a1P11087 Fzd1-201ENSMUST00000054294 4197 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
Col1a1P11087 Awat2-202ENSMUST00000147103 1984 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Col1a1P11087 Srpk3-201ENSMUST00000002081 1981 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col1a1P11087 Gm43760-201ENSMUST00000202120 3015 ntBASIC13.32□□□□□ -0.28
Col1a1P11087 Gad2-201ENSMUST00000028123 5744 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col1a1P11087 Zfp467-206ENSMUST00000114561 3619 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col1a1P11087 Cd300lf-201ENSMUST00000051264 1864 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col1a1P11087 Gm3642-201ENSMUST00000166895 1762 ntAPPRIS P5 TSL 5 BASIC13.32□□□□□ -0.28
Col1a1P11087 Rnf225-201ENSMUST00000045870 3239 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col1a1P11087 Fnbp4-201ENSMUST00000013759 4691 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col1a1P11087 Pkp1-201ENSMUST00000027667 4669 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col1a1P11087 Hnf1b-201ENSMUST00000021016 2759 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col1a1P11087 Cacna2d1-209ENSMUST00000199704 3861 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Col1a1P11087 Drc3-202ENSMUST00000094140 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col1a1P11087 Ncam2-201ENSMUST00000037785 4893 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col1a1P11087 Dcaf12-201ENSMUST00000030145 3442 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col1a1P11087 4932443L11Rik-202ENSMUST00000177130 2827 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Col1a1P11087 Abi2-201ENSMUST00000052332 5768 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Col1a1P11087 1810019N24Rik-201ENSMUST00000181128 1474 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Col1a1P11087 4921513H07Rik-201ENSMUST00000201403 2238 ntBASIC13.31□□□□□ -0.28
Col1a1P11087 Samhd1-203ENSMUST00000109549 3245 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col1a1P11087 Prr3-203ENSMUST00000172429 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col1a1P11087 Usp19-210ENSMUST00000193678 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col1a1P11087 Ube2v1-202ENSMUST00000109207 2041 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col1a1P11087 Eef1a1-201ENSMUST00000042235 1794 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col1a1P11087 2810430I11Rik-201ENSMUST00000154246 3416 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Col1a1P11087 Fdxacb1-201ENSMUST00000042391 2658 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col1a1P11087 Pex5l-203ENSMUST00000108221 1187 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Col1a1P11087 Trub2-203ENSMUST00000113807 1035 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Col1a1P11087 Colca2-201ENSMUST00000114427 1263 ntAPPRIS P1 TSL 3 BASIC13.31□□□□□ -0.28
Col1a1P11087 Srrm3os-201ENSMUST00000131896 1271 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Col1a1P11087 Hoxd3os1-203ENSMUST00000145799 511 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Col1a1P11087 2210406O10Rik-203ENSMUST00000149687 1198 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Col1a1P11087 Cd79b-202ENSMUST00000167143 1195 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col1a1P11087 Gm20493-201ENSMUST00000173706 213 ntBASIC13.31□□□□□ -0.28
Col1a1P11087 Gm6358-202ENSMUST00000187643 489 ntAPPRIS P5 BASIC13.31□□□□□ -0.28
Col1a1P11087 Isca2-206ENSMUST00000222449 374 ntTSL 2 BASIC13.31□□□□□ -0.28
Col1a1P11087 AC154435.1-201ENSMUST00000223938 959 ntBASIC13.31□□□□□ -0.28
Col1a1P11087 Tprg-201ENSMUST00000056087 1084 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col1a1P11087 Slc13a2-201ENSMUST00000001122 2412 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col1a1P11087 Jrk-201ENSMUST00000050234 5853 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col1a1P11087 Nbeal2-210ENSMUST00000167320 8803 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col1a1P11087 Satb2-201ENSMUST00000042857 6277 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Col1a1P11087 Fyttd1-211ENSMUST00000171325 4295 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Col1a1P11087 Gid8-202ENSMUST00000078687 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col1a1P11087 Gpr85-201ENSMUST00000060442 3661 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col1a1P11087 Padi2-201ENSMUST00000030765 4774 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col1a1P11087 Nfatc4-201ENSMUST00000024179 3267 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col1a1P11087 Grk3-204ENSMUST00000197888 1938 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Col1a1P11087 Rxfp3-201ENSMUST00000058007 4275 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
Col1a1P11087 Rgs12-205ENSMUST00000114283 2628 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Col1a1P11087 Tapbpl-201ENSMUST00000043422 2352 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col1a1P11087 Pik3r6-202ENSMUST00000102613 3225 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col1a1P11087 Cngb1-203ENSMUST00000120044 3243 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Col1a1P11087 Pik3r6-201ENSMUST00000060441 3237 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col1a1P11087 Aldh4a1-201ENSMUST00000039818 3382 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col1a1P11087 Nifk-202ENSMUST00000112688 849 ntTSL 5 BASIC13.3□□□□□ -0.28
Col1a1P11087 Gm15287-201ENSMUST00000132564 751 ntTSL 2 BASIC13.3□□□□□ -0.28
Col1a1P11087 Aamdc-206ENSMUST00000136757 789 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
Col1a1P11087 Snord55-201ENSMUST00000174939 79 ntBASIC13.3□□□□□ -0.28
Col1a1P11087 Gm18123-201ENSMUST00000210874 822 ntBASIC13.3□□□□□ -0.28
Col1a1P11087 Myl6-203ENSMUST00000217776 562 ntTSL 3 BASIC13.3□□□□□ -0.28
Col1a1P11087 Unc45a-201ENSMUST00000032748 3260 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col1a1P11087 Gm39168-201ENSMUST00000210181 1423 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Col1a1P11087 Nr1i3-201ENSMUST00000005820 1414 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col1a1P11087 Psmc1-201ENSMUST00000021595 1591 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 45.2 ms