Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Tnni3-201ENSMUST00000098859 912 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Trim3Q9R1R2 Tnfaip3-201ENSMUST00000019997 4422 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Trim3Q9R1R2 Rtp4-202ENSMUST00000209422 1859 ntAPPRIS P1 TSL 5 BASIC10.86□□□□□ -0.67
Trim3Q9R1R2 Odf2-209ENSMUST00000113764 2450 ntAPPRIS P3 TSL 5 BASIC10.86□□□□□ -0.67
Trim3Q9R1R2 Eef1d-205ENSMUST00000109972 1624 ntAPPRIS ALT2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Trim3Q9R1R2 Olfm4-201ENSMUST00000088735 1640 ntTSL 2 BASIC10.86□□□□□ -0.67
Trim3Q9R1R2 AC124397.2-201ENSMUST00000225575 2215 ntBASIC10.86□□□□□ -0.67
Trim3Q9R1R2 Dgkh-202ENSMUST00000226342 15261 ntAPPRIS P1 BASIC10.86□□□□□ -0.67
Trim3Q9R1R2 Rpap2-204ENSMUST00000112654 2914 ntAPPRIS ALT2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Trim3Q9R1R2 Pdcd11-201ENSMUST00000072141 6041 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Trim3Q9R1R2 AC159308.2-201ENSMUST00000213592 2325 ntBASIC10.86□□□□□ -0.67
Trim3Q9R1R2 Gm43289-201ENSMUST00000200537 1475 ntBASIC10.86□□□□□ -0.67
Trim3Q9R1R2 Hsd3b6-201ENSMUST00000029463 1802 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Trim3Q9R1R2 Cln3-201ENSMUST00000032962 2386 ntAPPRIS P2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Trim3Q9R1R2 Gm14025-201ENSMUST00000145798 4242 ntAPPRIS P1 TSL 5 BASIC10.85□□□□□ -0.67
Trim3Q9R1R2 Gm9333-201ENSMUST00000205452 1323 ntBASIC10.85□□□□□ -0.67
Trim3Q9R1R2 Olfr139-204ENSMUST00000214111 1311 ntAPPRIS P1 TSL 5 BASIC10.85□□□□□ -0.67
Trim3Q9R1R2 Gm42463-201ENSMUST00000198041 4886 ntBASIC10.85□□□□□ -0.67
Trim3Q9R1R2 Wdr82-201ENSMUST00000020490 3747 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Trim3Q9R1R2 Tcirg1-204ENSMUST00000126070 3041 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Trim3Q9R1R2 Foxn4-201ENSMUST00000044790 3016 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Trim3Q9R1R2 Cyp4f16-208ENSMUST00000169591 2242 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Trim3Q9R1R2 Erich3-203ENSMUST00000189969 3460 ntBASIC10.85□□□□□ -0.67
Trim3Q9R1R2 Bahcc1-203ENSMUST00000122148 10712 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Trim3Q9R1R2 Gm9072-201ENSMUST00000218390 1514 ntBASIC10.85□□□□□ -0.67
Trim3Q9R1R2 Traf7-202ENSMUST00000088464 2504 ntAPPRIS P1 TSL 5 BASIC10.85□□□□□ -0.67
Trim3Q9R1R2 Gm5124-202ENSMUST00000132683 2083 ntBASIC10.85□□□□□ -0.67
Trim3Q9R1R2 Knop1-202ENSMUST00000063607 4884 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Trim3Q9R1R2 Gm12196-201ENSMUST00000120954 262 ntBASIC10.85□□□□□ -0.67
Trim3Q9R1R2 Gm11450-201ENSMUST00000121144 333 ntBASIC10.85□□□□□ -0.67
Trim3Q9R1R2 Gm25881-201ENSMUST00000157783 103 ntBASIC10.85□□□□□ -0.67
Trim3Q9R1R2 Gm28778-201ENSMUST00000190734 785 ntAPPRIS P1 TSL 3 BASIC10.85□□□□□ -0.67
Trim3Q9R1R2 Gm43138-201ENSMUST00000199123 708 ntBASIC10.85□□□□□ -0.67
Trim3Q9R1R2 Gm4657-201ENSMUST00000213839 787 ntTSL 3 BASIC10.85□□□□□ -0.67
Trim3Q9R1R2 Gm807-202ENSMUST00000224929 408 ntBASIC10.85□□□□□ -0.67
Trim3Q9R1R2 Prss52-201ENSMUST00000022537 1064 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Trim3Q9R1R2 AC121960.1-201ENSMUST00000227982 564 ntBASIC10.85□□□□□ -0.67
Trim3Q9R1R2 Prg2-201ENSMUST00000028467 838 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Trim3Q9R1R2 Gm21811-201ENSMUST00000096485 930 ntBASIC10.85□□□□□ -0.67
Trim3Q9R1R2 Morf4l2-204ENSMUST00000113097 1825 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Trim3Q9R1R2 Tmod2-202ENSMUST00000098552 9871 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Trim3Q9R1R2 Zfp773-201ENSMUST00000032622 3028 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Trim3Q9R1R2 Fggy-201ENSMUST00000043335 1910 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Trim3Q9R1R2 Nono-201ENSMUST00000033673 2562 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Trim3Q9R1R2 Chic1-201ENSMUST00000116547 7375 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Trim3Q9R1R2 Hrct1-201ENSMUST00000095109 1452 ntAPPRIS P1 BASIC10.85□□□□□ -0.67
Trim3Q9R1R2 Myh2-201ENSMUST00000018641 6018 ntAPPRIS P1 TSL 5 BASIC10.85□□□□□ -0.67
Trim3Q9R1R2 AC159195.3-201ENSMUST00000225162 2211 ntBASIC10.85□□□□□ -0.67
Trim3Q9R1R2 Cyp2s1-202ENSMUST00000108395 3161 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Trim3Q9R1R2 1300017J02Rik-202ENSMUST00000123530 1874 ntTSL 5 BASIC10.85□□□□□ -0.67
Trim3Q9R1R2 Msra-201ENSMUST00000067927 1860 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Trim3Q9R1R2 Gjc1-202ENSMUST00000092567 1890 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Trim3Q9R1R2 H2-Q1-202ENSMUST00000105041 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Trim3Q9R1R2 Amotl1-201ENSMUST00000013220 8957 ntAPPRIS P2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Trim3Q9R1R2 Folr1-203ENSMUST00000106983 1307 ntAPPRIS P1 TSL 5 BASIC10.84□□□□□ -0.67
Trim3Q9R1R2 Parp11-202ENSMUST00000112191 3414 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Trim3Q9R1R2 Dis3l-201ENSMUST00000068367 3605 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Trim3Q9R1R2 Efna1-202ENSMUST00000118587 1632 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Trim3Q9R1R2 Olfr541-203ENSMUST00000210357 1642 ntAPPRIS P1 TSL 2 BASIC10.84□□□□□ -0.67
Trim3Q9R1R2 Gm3836-201ENSMUST00000211377 1613 ntBASIC10.84□□□□□ -0.67
Trim3Q9R1R2 Gm26642-201ENSMUST00000180981 2782 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Trim3Q9R1R2 Foxn2-201ENSMUST00000112238 5085 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Trim3Q9R1R2 Meltf-201ENSMUST00000023464 4133 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Trim3Q9R1R2 Tcp11l1-202ENSMUST00000111118 5474 ntAPPRIS P1 TSL 5 BASIC10.84□□□□□ -0.67
Trim3Q9R1R2 Dcun1d3-202ENSMUST00000098080 3072 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Trim3Q9R1R2 Cyp11b1-201ENSMUST00000170259 3165 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Trim3Q9R1R2 Lgsn-201ENSMUST00000062560 1937 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Trim3Q9R1R2 Gm37422-201ENSMUST00000193794 4718 ntBASIC10.84□□□□□ -0.67
Trim3Q9R1R2 Smc3-201ENSMUST00000025930 4851 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Trim3Q9R1R2 Gnas-203ENSMUST00000087876 3719 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Trim3Q9R1R2 Lyzl6-202ENSMUST00000107014 802 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Trim3Q9R1R2 Ccl1-202ENSMUST00000108189 514 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Trim3Q9R1R2 Eif5a-205ENSMUST00000108608 775 ntAPPRIS P1 TSL 5 BASIC10.84□□□□□ -0.67
Trim3Q9R1R2 Lamr1-ps1-201ENSMUST00000119759 874 ntBASIC10.84□□□□□ -0.67
Trim3Q9R1R2 Mia-202ENSMUST00000121848 572 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
Trim3Q9R1R2 Mir6979-201ENSMUST00000183927 56 ntBASIC10.84□□□□□ -0.67
Trim3Q9R1R2 Gm44136-201ENSMUST00000203819 1106 ntBASIC10.84□□□□□ -0.67
Trim3Q9R1R2 Ccl1-201ENSMUST00000021043 611 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Trim3Q9R1R2 5330413P13Rik-205ENSMUST00000210961 913 ntTSL 5 BASIC10.84□□□□□ -0.67
Trim3Q9R1R2 Tnfrsf19-203ENSMUST00000224371 1239 ntAPPRIS ALT2 BASIC10.84□□□□□ -0.67
Trim3Q9R1R2 Ly6g5c-201ENSMUST00000037849 509 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Trim3Q9R1R2 Mrpl41-201ENSMUST00000045604 776 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Trim3Q9R1R2 Wfdc21-201ENSMUST00000070832 434 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Trim3Q9R1R2 Krtap19-1-201ENSMUST00000081334 493 ntAPPRIS P1 BASIC10.84□□□□□ -0.67
Trim3Q9R1R2 Cdh20-201ENSMUST00000062528 4012 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Trim3Q9R1R2 AC091458.1-201ENSMUST00000220902 1361 ntBASIC10.84□□□□□ -0.67
Trim3Q9R1R2 Neu2-206ENSMUST00000166259 1596 ntAPPRIS P3 TSL 1 (best) BASIC10.84□□□□□ -0.67
Trim3Q9R1R2 Fbxo40-201ENSMUST00000075869 5137 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Trim3Q9R1R2 Cyp4b1-201ENSMUST00000102707 1892 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Trim3Q9R1R2 Cep350-204ENSMUST00000138762 13307 ntAPPRIS P1 TSL 5 BASIC10.84□□□□□ -0.67
Trim3Q9R1R2 Adcy6-201ENSMUST00000096224 6038 ntAPPRIS P2 TSL 1 (best) BASIC10.84□□□□□ -0.67
Trim3Q9R1R2 D030045P18Rik-204ENSMUST00000215085 2186 ntTSL 5 BASIC10.84□□□□□ -0.67
Trim3Q9R1R2 Rabgef1-203ENSMUST00000119797 2690 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Trim3Q9R1R2 Tnip1-202ENSMUST00000102730 2787 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
Trim3Q9R1R2 Enox1-203ENSMUST00000227662 3064 ntAPPRIS ALT2 BASIC10.84□□□□□ -0.67
Trim3Q9R1R2 Fam172a-201ENSMUST00000091459 3892 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
Trim3Q9R1R2 Ncor2-202ENSMUST00000086083 8575 ntAPPRIS P2 TSL 5 BASIC10.84□□□□□ -0.67
Trim3Q9R1R2 Fam120b-201ENSMUST00000055352 4518 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Trim3Q9R1R2 Gm14698-201ENSMUST00000096420 4226 ntAPPRIS P1 BASIC10.84□□□□□ -0.67
Trim3Q9R1R2 Acsl1-202ENSMUST00000110371 2100 ntTSL 5 BASIC10.84□□□□□ -0.67
Retrieved 100 of 76,532 protein–RNA pairs in 64.7 ms