Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 3110056K07Rik-202ENSMUST00000136690 1063 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 Gm12199-201ENSMUST00000137567 517 ntTSL 3 BASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 Rpl19-201ENSMUST00000017548 751 ntAPPRIS P3 TSL 1 (best) BASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 Snhg8-203ENSMUST00000199645 528 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 Gm2420-203ENSMUST00000202748 447 ntTSL 5 BASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 Gm17931-201ENSMUST00000208132 634 ntBASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 Gm39929-201ENSMUST00000209672 693 ntTSL 3 BASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 Tmem205-203ENSMUST00000213698 705 ntAPPRIS P1 TSL 3 BASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 Gm3898-202ENSMUST00000216905 328 ntTSL 2 BASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 AC122371.3-201ENSMUST00000223402 1061 ntBASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 Abca9-201ENSMUST00000044850 6384 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 Isoc2b-201ENSMUST00000064547 1080 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 Rpl19-202ENSMUST00000092425 737 ntAPPRIS ALT1 TSL 3 BASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 4933440M02Rik-202ENSMUST00000205794 1601 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 Eif2ak4-201ENSMUST00000005233 5212 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 Zfp384-205ENSMUST00000112424 2673 ntAPPRIS ALT2 TSL 5 BASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 9530082P21Rik-203ENSMUST00000181605 3162 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 Rad17-201ENSMUST00000022136 2839 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 Sparc-202ENSMUST00000108858 2115 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 Bpi-202ENSMUST00000109499 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 Gm11696-203ENSMUST00000188296 1793 ntTSL 3 BASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 Gm15326-202ENSMUST00000128198 1422 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 4930594M22Rik-202ENSMUST00000161599 3595 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 Mier1-204ENSMUST00000106857 4752 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 Ndufs4-201ENSMUST00000022286 1698 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 Smpd4-219ENSMUST00000170366 2256 ntTSL 5 BASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 Slc22a4-201ENSMUST00000020586 2263 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 Gnas-223ENSMUST00000185956 3729 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 Gnas-224ENSMUST00000186907 3729 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 Slc18a1-201ENSMUST00000037478 3115 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 Dtl-201ENSMUST00000027933 4212 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 Gm6015-201ENSMUST00000217493 1586 ntBASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 4732414G09Rik-201ENSMUST00000156243 2422 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 Madd-204ENSMUST00000077941 5990 ntAPPRIS ALT2 TSL 2 BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Madd-205ENSMUST00000099723 5977 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Gm37954-201ENSMUST00000195400 2071 ntBASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Dok4-204ENSMUST00000212810 2558 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Nr1i2-201ENSMUST00000023504 2553 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 BC035947-201ENSMUST00000170511 3063 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Sorbs3-203ENSMUST00000227653 3061 ntAPPRIS ALT2 BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Lsp1-205ENSMUST00000105968 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Th-202ENSMUST00000105929 1950 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Rai2-201ENSMUST00000061514 2204 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Vipr2-201ENSMUST00000011315 3383 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Cd300lf-201ENSMUST00000051264 1864 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Prdm1-202ENSMUST00000105490 4025 ntAPPRIS P2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Vmn1r45-206ENSMUST00000227977 3297 ntAPPRIS P1 BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 3110062M04Rik-201ENSMUST00000055097 3681 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Ninl-201ENSMUST00000109896 5093 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Nccrp1-201ENSMUST00000057974 1531 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Madd-202ENSMUST00000066473 5974 ntAPPRIS ALT2 TSL 5 BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Inpp4a-208ENSMUST00000137266 2934 ntTSL 5 BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Gm11989-201ENSMUST00000117240 672 ntBASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Gm11362-201ENSMUST00000118838 850 ntBASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Gm5419-201ENSMUST00000119301 527 ntBASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Gm15610-201ENSMUST00000120584 195 ntBASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Immp2l-202ENSMUST00000132121 1147 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Hnf4aos-203ENSMUST00000141329 839 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Glmp-201ENSMUST00000001454 1017 ntTSL 5 BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Gm6963-201ENSMUST00000147879 379 ntBASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Gm26740-201ENSMUST00000180456 358 ntTSL 3 BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Gm17586-201ENSMUST00000181502 908 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Gm27046-201ENSMUST00000182160 463 ntBASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Gm29054-201ENSMUST00000187589 1185 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Gm38000-201ENSMUST00000192390 1215 ntBASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Gm38241-201ENSMUST00000192641 898 ntBASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Gm35986-201ENSMUST00000197370 655 ntTSL 2 BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 1700018A23Rik-201ENSMUST00000201350 398 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Gm45021-201ENSMUST00000204521 369 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Gm45691-201ENSMUST00000206905 1120 ntBASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Ldha-213ENSMUST00000210631 685 ntTSL 5 BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 AC164612.1-201ENSMUST00000216699 517 ntTSL 5 BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Hspb2-202ENSMUST00000217159 552 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Mcpt1-201ENSMUST00000022836 1014 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Fxyd1-202ENSMUST00000071697 522 ntAPPRIS P1 TSL 3 BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 1700007G11Rik-201ENSMUST00000080333 861 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Htr1d-203ENSMUST00000121571 2426 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Anks1b-216ENSMUST00000182430 3305 ntTSL 5 BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Ivns1abp-202ENSMUST00000097543 3337 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 H2-T24-201ENSMUST00000113760 2182 ntAPPRIS P1 TSL 2 BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Spats2l-211ENSMUST00000169772 2311 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Vwa1-201ENSMUST00000042196 3623 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 AC108858.2-201ENSMUST00000228186 1425 ntBASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Cacna1c-219ENSMUST00000189389 6603 ntAPPRIS ALT2 TSL 5 BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Gatb-202ENSMUST00000107672 1820 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Syt15-202ENSMUST00000119693 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Serpina16-202ENSMUST00000164148 1582 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Col6a4-201ENSMUST00000121963 7371 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Tns1-217ENSMUST00000191104 9904 ntAPPRIS P3 TSL 5 BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Bahcc1-203ENSMUST00000122148 10712 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Igf1-204ENSMUST00000121161 1344 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Pou6f1-201ENSMUST00000058274 2523 ntTSL 2 BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Ubxn6-201ENSMUST00000019722 2949 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Plekha7-207ENSMUST00000182511 4502 ntTSL 2 BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Angptl4-201ENSMUST00000002360 3053 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Tpst1-202ENSMUST00000118993 1867 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Gm21319-201ENSMUST00000164517 1863 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Ddx28Q9CWT6 Gm43143-201ENSMUST00000196083 2023 ntBASIC10.8□□□□□ -0.68
Ddx28Q9CWT6 Gm8155-201ENSMUST00000216363 1612 ntBASIC10.8□□□□□ -0.68
Ddx28Q9CWT6 Mmel1-204ENSMUST00000105635 2592 ntAPPRIS ALT2 TSL 5 BASIC10.8□□□□□ -0.68
Retrieved 100 of 76,532 protein–RNA pairs in 32.1 ms