Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Cisd3-203ENSMUST00000107585 586 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col6a1Q04857 Smim8-204ENSMUST00000108133 935 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col6a1Q04857 Gm14132-201ENSMUST00000117188 1719 ntBASIC12.75□□□□□ -0.37
Col6a1Q04857 Gm11244-201ENSMUST00000121243 237 ntBASIC12.75□□□□□ -0.37
Col6a1Q04857 Gm14266-202ENSMUST00000146542 1067 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Col6a1Q04857 AC158605.1-201ENSMUST00000156803 764 ntTSL 3 BASIC12.75□□□□□ -0.37
Col6a1Q04857 Gm15524-201ENSMUST00000159874 463 ntTSL 3 BASIC12.75□□□□□ -0.37
Col6a1Q04857 Gm8459-201ENSMUST00000162504 760 ntBASIC12.75□□□□□ -0.37
Col6a1Q04857 Gas5-224ENSMUST00000162558 502 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Col6a1Q04857 Tro-208ENSMUST00000164071 891 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Col6a1Q04857 Nlrx1-202ENSMUST00000168499 3579 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col6a1Q04857 1110059E24Rik-205ENSMUST00000178523 629 ntTSL 3 BASIC12.75□□□□□ -0.37
Col6a1Q04857 Gm9034-201ENSMUST00000182071 1005 ntBASIC12.75□□□□□ -0.37
Col6a1Q04857 Slc25a13-203ENSMUST00000188414 3121 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col6a1Q04857 Gm18776-201ENSMUST00000188833 654 ntBASIC12.75□□□□□ -0.37
Col6a1Q04857 Gm37638-201ENSMUST00000194337 1123 ntBASIC12.75□□□□□ -0.37
Col6a1Q04857 Prrt3-204ENSMUST00000205075 1956 ntAPPRIS ALT2 TSL 2 BASIC12.75□□□□□ -0.37
Col6a1Q04857 Gm39288-201ENSMUST00000210554 446 ntBASIC12.75□□□□□ -0.37
Col6a1Q04857 Gm32635-201ENSMUST00000221493 1162 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Col6a1Q04857 CT030135.2-201ENSMUST00000225255 893 ntBASIC12.75□□□□□ -0.37
Col6a1Q04857 Vps33b-201ENSMUST00000032749 2574 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col6a1Q04857 Atp5h-201ENSMUST00000043931 625 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col6a1Q04857 Paip2b-201ENSMUST00000058383 3982 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col6a1Q04857 BC049762-202ENSMUST00000065950 883 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col6a1Q04857 Prss3-201ENSMUST00000096003 822 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col6a1Q04857 Tbc1d1-204ENSMUST00000121370 5419 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col6a1Q04857 Rin2-202ENSMUST00000110005 4641 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Col6a1Q04857 Arhgap4-203ENSMUST00000114405 6299 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Col6a1Q04857 Pygo1-201ENSMUST00000038489 7916 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col6a1Q04857 Tacr2-201ENSMUST00000020278 2258 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col6a1Q04857 Rph3a-201ENSMUST00000079204 4150 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col6a1Q04857 Sin3b-201ENSMUST00000004494 4115 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col6a1Q04857 Ufd1-201ENSMUST00000005394 1996 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col6a1Q04857 Ly75-202ENSMUST00000112533 6901 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
Col6a1Q04857 Hnrnpa2b1-203ENSMUST00000114459 1728 ntAPPRIS ALT1 TSL 5 BASIC12.74□□□□□ -0.37
Col6a1Q04857 Tfdp1-201ENSMUST00000170909 1700 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col6a1Q04857 Cd163l1-203ENSMUST00000209398 3437 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col6a1Q04857 Oxsm-202ENSMUST00000112624 1586 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col6a1Q04857 Gm3755-201ENSMUST00000169555 1462 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
Col6a1Q04857 Gfod2-201ENSMUST00000013294 4352 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col6a1Q04857 Gm6170-201ENSMUST00000187672 1388 ntBASIC12.74□□□□□ -0.37
Col6a1Q04857 Sec13-201ENSMUST00000032440 1353 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col6a1Q04857 Gm28373-201ENSMUST00000178129 2724 ntTSL 2 BASIC12.74□□□□□ -0.37
Col6a1Q04857 Rab3d-203ENSMUST00000122211 3886 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col6a1Q04857 Btnl2-202ENSMUST00000178562 2563 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
Col6a1Q04857 Btnl2-201ENSMUST00000025198 2564 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col6a1Q04857 Tcl1-202ENSMUST00000101071 1299 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Col6a1Q04857 Camk1d-202ENSMUST00000114987 1295 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Col6a1Q04857 Gm5555-201ENSMUST00000120352 1111 ntBASIC12.74□□□□□ -0.37
Col6a1Q04857 Gm12791-201ENSMUST00000120788 655 ntBASIC12.74□□□□□ -0.37
Col6a1Q04857 Gm17116-201ENSMUST00000169175 1013 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Col6a1Q04857 Tcl1-204ENSMUST00000176579 760 ntTSL 2 BASIC12.74□□□□□ -0.37
Col6a1Q04857 Gm37852-201ENSMUST00000193027 350 ntBASIC12.74□□□□□ -0.37
Col6a1Q04857 AC170997.1-201ENSMUST00000214554 1053 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Col6a1Q04857 AC153887.1-201ENSMUST00000219154 1253 ntTSL 5 BASIC12.74□□□□□ -0.37
Col6a1Q04857 CT009546.1-201ENSMUST00000222573 1120 ntBASIC12.74□□□□□ -0.37
Col6a1Q04857 Gm10263-201ENSMUST00000085163 300 ntBASIC12.74□□□□□ -0.37
Col6a1Q04857 Otub2-202ENSMUST00000101094 3228 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Col6a1Q04857 Phykpl-206ENSMUST00000167797 3116 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col6a1Q04857 Tubd1-201ENSMUST00000020821 2070 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Col6a1Q04857 Slc4a3-202ENSMUST00000124341 7182 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col6a1Q04857 Gm8038-201ENSMUST00000164674 2044 ntBASIC12.74□□□□□ -0.37
Col6a1Q04857 Kdm5b-201ENSMUST00000047714 8714 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col6a1Q04857 Usp3-211ENSMUST00000174387 1901 ntTSL 5 BASIC12.74□□□□□ -0.37
Col6a1Q04857 Egr2-202ENSMUST00000105438 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col6a1Q04857 Traf3ip2-201ENSMUST00000019987 2867 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col6a1Q04857 Abca7-202ENSMUST00000132517 6696 ntAPPRIS P3 TSL 5 BASIC12.74□□□□□ -0.37
Col6a1Q04857 Vwf-201ENSMUST00000100941 1807 ntTSL 5 BASIC12.74□□□□□ -0.37
Col6a1Q04857 Gm18983-201ENSMUST00000222884 2729 ntBASIC12.74□□□□□ -0.37
Col6a1Q04857 Btnl4-201ENSMUST00000065841 1761 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
Col6a1Q04857 Arl8b-201ENSMUST00000032196 4443 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col6a1Q04857 Myh2-203ENSMUST00000170159 6083 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
Col6a1Q04857 Slc10a3-204ENSMUST00000114147 1708 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
Col6a1Q04857 Gm18294-201ENSMUST00000176980 1748 ntBASIC12.74□□□□□ -0.37
Col6a1Q04857 Pla2g15-204ENSMUST00000212963 2578 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Col6a1Q04857 Slc4a2-202ENSMUST00000115047 4264 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
Col6a1Q04857 Enpp5-201ENSMUST00000024756 2534 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col6a1Q04857 Gm21358-201ENSMUST00000191645 1659 ntBASIC12.73□□□□□ -0.37
Col6a1Q04857 Tor3a-201ENSMUST00000079625 3285 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col6a1Q04857 4732471J01Rik-204ENSMUST00000206436 2430 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Col6a1Q04857 Plxnb2-201ENSMUST00000060808 6394 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Col6a1Q04857 Irak2-201ENSMUST00000059286 3196 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col6a1Q04857 Zfp853-203ENSMUST00000212715 3133 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Col6a1Q04857 Ino80c-203ENSMUST00000141489 2207 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Col6a1Q04857 Bpifb4-201ENSMUST00000099181 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col6a1Q04857 Kcnip4-207ENSMUST00000176191 2116 ntTSL 5 BASIC12.73□□□□□ -0.37
Col6a1Q04857 Accs-201ENSMUST00000041593 2036 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col6a1Q04857 Ocln-203ENSMUST00000159459 1950 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Col6a1Q04857 Gm11619-201ENSMUST00000117474 237 ntBASIC12.73□□□□□ -0.37
Col6a1Q04857 Cd55b-202ENSMUST00000119432 986 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Col6a1Q04857 Sumo3-203ENSMUST00000124024 776 ntTSL 2 BASIC12.73□□□□□ -0.37
Col6a1Q04857 Ndufb5-204ENSMUST00000127477 1079 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col6a1Q04857 Gzmc-201ENSMUST00000015585 894 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col6a1Q04857 Spdye4c-203ENSMUST00000178601 1020 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col6a1Q04857 Gm28196-201ENSMUST00000187719 640 ntBASIC12.73□□□□□ -0.37
Col6a1Q04857 Gm28901-201ENSMUST00000188810 474 ntTSL 5 BASIC12.73□□□□□ -0.37
Col6a1Q04857 Ighv1-60-201ENSMUST00000195816 405 ntBASIC12.73□□□□□ -0.37
Col6a1Q04857 Gm42511-201ENSMUST00000196160 234 ntBASIC12.73□□□□□ -0.37
Col6a1Q04857 Gm35986-201ENSMUST00000197370 655 ntTSL 2 BASIC12.73□□□□□ -0.37
Col6a1Q04857 Gm43380-201ENSMUST00000200421 220 ntBASIC12.73□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 39.6 ms