Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Txn1-201ENSMUST00000030051 1051 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Sdc1P18828 Kcng4-201ENSMUST00000061828 3806 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Sdc1P18828 Rhox2a-201ENSMUST00000063340 795 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Sdc1P18828 Ccdc130-202ENSMUST00000098578 2119 ntAPPRIS P3 TSL 1 (best) BASIC9.36□□□□□ -0.91
Sdc1P18828 Brd2-202ENSMUST00000095347 2617 ntTSL 5 BASIC9.36□□□□□ -0.91
Sdc1P18828 Fhl2-202ENSMUST00000185893 1421 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Sdc1P18828 Pmp2-201ENSMUST00000029034 1408 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Sdc1P18828 Actbl2-201ENSMUST00000054716 2737 ntAPPRIS P1 BASIC9.36□□□□□ -0.91
Sdc1P18828 Myo5a-206ENSMUST00000136731 6480 ntAPPRIS ALT1 TSL 5 BASIC9.36□□□□□ -0.91
Sdc1P18828 Pcdh15-233ENSMUST00000191709 5346 ntAPPRIS ALT2 TSL 5 BASIC9.36□□□□□ -0.91
Sdc1P18828 Scrn3-202ENSMUST00000112050 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC9.36□□□□□ -0.91
Sdc1P18828 Atxn1l-201ENSMUST00000093162 7526 ntAPPRIS P1 TSL 2 BASIC9.36□□□□□ -0.91
Sdc1P18828 Calr-201ENSMUST00000003912 2184 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Sdc1P18828 Trem1-201ENSMUST00000048782 2993 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Sdc1P18828 Nos1ap-203ENSMUST00000160466 1533 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
Sdc1P18828 Ubr1-201ENSMUST00000028728 7768 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Sdc1P18828 Pcdh18-201ENSMUST00000035931 5168 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Sdc1P18828 Robo4-203ENSMUST00000115048 3392 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Sdc1P18828 C530005A16Rik-201ENSMUST00000142815 2436 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Sdc1P18828 4930581F22Rik-201ENSMUST00000093873 2402 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Sdc1P18828 Synpo2l-203ENSMUST00000119483 3696 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Sdc1P18828 Zfp940-202ENSMUST00000108223 2560 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Sdc1P18828 Gm31816-202ENSMUST00000209591 1332 ntTSL 5 BASIC9.35□□□□□ -0.91
Sdc1P18828 Prss22-201ENSMUST00000041649 1323 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Sdc1P18828 Prr15l-201ENSMUST00000054311 1342 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Sdc1P18828 Pla2g4a-201ENSMUST00000070200 2856 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Sdc1P18828 Bad-201ENSMUST00000025910 1451 ntAPPRIS P3 TSL 1 (best) BASIC9.35□□□□□ -0.91
Sdc1P18828 Gm31108-201ENSMUST00000204101 1633 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Sdc1P18828 St6galnac4-201ENSMUST00000102818 3626 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Sdc1P18828 Patz1-207ENSMUST00000134089 1904 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Sdc1P18828 Gm26527-201ENSMUST00000180416 1948 ntTSL 5 BASIC9.35□□□□□ -0.91
Sdc1P18828 Gm42047-202ENSMUST00000212899 4988 ntTSL 2 BASIC9.35□□□□□ -0.91
Sdc1P18828 9430064I24Rik-201ENSMUST00000206516 2669 ntBASIC9.35□□□□□ -0.91
Sdc1P18828 Olfr1349-206ENSMUST00000213656 4492 ntAPPRIS P1 TSL 5 BASIC9.35□□□□□ -0.91
Sdc1P18828 Frmpd3-203ENSMUST00000208130 7314 ntAPPRIS P1 TSL 5 BASIC9.35□□□□□ -0.91
Sdc1P18828 Rhox2b-201ENSMUST00000115191 799 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Sdc1P18828 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC9.35□□□□□ -0.91
Sdc1P18828 Dusp16-202ENSMUST00000129433 3993 ntAPPRIS ALT2 TSL 1 (best) BASIC9.35□□□□□ -0.91
Sdc1P18828 Gnb2-209ENSMUST00000143495 1285 ntTSL 5 BASIC9.35□□□□□ -0.91
Sdc1P18828 Gm15945-201ENSMUST00000146755 810 ntTSL 3 BASIC9.35□□□□□ -0.91
Sdc1P18828 Gm14224-201ENSMUST00000147187 864 ntTSL 3 BASIC9.35□□□□□ -0.91
Sdc1P18828 BC004004-203ENSMUST00000149405 1402 ntAPPRIS P1 TSL 5 BASIC9.35□□□□□ -0.91
Sdc1P18828 Pmepa1os-201ENSMUST00000150185 680 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Sdc1P18828 Gm11515-201ENSMUST00000150818 701 ntTSL 2 BASIC9.35□□□□□ -0.91
Sdc1P18828 Gm11754-201ENSMUST00000156576 661 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Sdc1P18828 1810008B01Rik-201ENSMUST00000162325 829 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Sdc1P18828 Zdhhc23-202ENSMUST00000165648 1278 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Sdc1P18828 Igdcc4-203ENSMUST00000166273 778 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Sdc1P18828 Slc38a3-203ENSMUST00000177567 2456 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Sdc1P18828 Gm27023-201ENSMUST00000182372 285 ntBASIC9.35□□□□□ -0.91
Sdc1P18828 Gm29152-201ENSMUST00000189284 325 ntTSL 5 BASIC9.35□□□□□ -0.91
Sdc1P18828 Gm28631-201ENSMUST00000190740 334 ntBASIC9.35□□□□□ -0.91
Sdc1P18828 Gm44103-201ENSMUST00000204364 3662 ntBASIC9.35□□□□□ -0.91
Sdc1P18828 AI467606-202ENSMUST00000206102 832 ntAPPRIS P1 TSL 5 BASIC9.35□□□□□ -0.91
Sdc1P18828 Gm8463-201ENSMUST00000208573 613 ntBASIC9.35□□□□□ -0.91
Sdc1P18828 Plpbp-203ENSMUST00000209525 5767 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Sdc1P18828 Hdac9-206ENSMUST00000209990 3072 ntAPPRIS ALT2 TSL 5 BASIC9.35□□□□□ -0.91
Sdc1P18828 Gm33460-201ENSMUST00000212286 536 ntTSL 5 BASIC9.35□□□□□ -0.91
Sdc1P18828 AC152453.1-201ENSMUST00000218802 1254 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Sdc1P18828 Wdyhv1-206ENSMUST00000227142 786 ntBASIC9.35□□□□□ -0.91
Sdc1P18828 Emc4-201ENSMUST00000028551 983 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Sdc1P18828 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Sdc1P18828 Olfr524-201ENSMUST00000051943 1058 ntAPPRIS P1 BASIC9.35□□□□□ -0.91
Sdc1P18828 Gng8-201ENSMUST00000078182 910 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Sdc1P18828 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC9.35□□□□□ -0.91
Sdc1P18828 Slco5a1-202ENSMUST00000115403 8509 ntAPPRIS P2 TSL 5 BASIC9.35□□□□□ -0.91
Sdc1P18828 Slc25a45-206ENSMUST00000155697 1960 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Sdc1P18828 Gm26690-201ENSMUST00000181457 1997 ntTSL 5 BASIC9.35□□□□□ -0.91
Sdc1P18828 Phf8-203ENSMUST00000112662 3732 ntAPPRIS P3 TSL 5 BASIC9.35□□□□□ -0.91
Sdc1P18828 Snap29-201ENSMUST00000023449 3429 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Sdc1P18828 Mthfsd-201ENSMUST00000047282 8312 ntAPPRIS P3 TSL 1 (best) BASIC9.35□□□□□ -0.91
Sdc1P18828 Akr1b3-201ENSMUST00000102980 1387 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Sdc1P18828 Gm12333-201ENSMUST00000155508 2669 ntTSL 3 BASIC9.35□□□□□ -0.91
Sdc1P18828 Vipas39-202ENSMUST00000072744 2524 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Sdc1P18828 Zfp775-201ENSMUST00000061720 4083 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Sdc1P18828 Myh9-201ENSMUST00000016771 7433 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Sdc1P18828 1700113H08Rik-201ENSMUST00000169849 1332 ntAPPRIS P1 TSL 5 BASIC9.34□□□□□ -0.91
Sdc1P18828 Zmynd8-205ENSMUST00000109266 5072 ntAPPRIS P4 TSL 1 (best) BASIC9.34□□□□□ -0.91
Sdc1P18828 Bcorl1-203ENSMUST00000136348 7446 ntAPPRIS P1 TSL 5 BASIC9.34□□□□□ -0.91
Sdc1P18828 Gm4846-201ENSMUST00000143922 1744 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Sdc1P18828 Hmg20a-205ENSMUST00000215269 1700 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Sdc1P18828 Tspan32-201ENSMUST00000009396 1582 ntAPPRIS ALT2 TSL 1 (best) BASIC9.34□□□□□ -0.91
Sdc1P18828 Gm26631-201ENSMUST00000181462 2505 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Sdc1P18828 Acss3-203ENSMUST00000165067 4696 ntAPPRIS P1 TSL 5 BASIC9.34□□□□□ -0.91
Sdc1P18828 4930488L21Rik-202ENSMUST00000212638 3164 ntTSL 5 BASIC9.34□□□□□ -0.91
Sdc1P18828 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC9.34□□□□□ -0.91
Sdc1P18828 Fam166b-203ENSMUST00000107929 865 ntAPPRIS P5 TSL 5 BASIC9.34□□□□□ -0.91
Sdc1P18828 Ccdc69-202ENSMUST00000108880 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC9.34□□□□□ -0.91
Sdc1P18828 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Sdc1P18828 Colca2-201ENSMUST00000114427 1263 ntAPPRIS P1 TSL 3 BASIC9.34□□□□□ -0.91
Sdc1P18828 Fzr1-202ENSMUST00000118812 1215 ntTSL 5 BASIC9.34□□□□□ -0.91
Sdc1P18828 Emd-204ENSMUST00000119197 768 ntTSL 3 BASIC9.34□□□□□ -0.91
Sdc1P18828 Dancr-202ENSMUST00000120364 575 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Sdc1P18828 Sncb-202ENSMUST00000134110 722 ntAPPRIS P1 TSL 3 BASIC9.34□□□□□ -0.91
Sdc1P18828 Drap1-209ENSMUST00000136579 734 ntTSL 2 BASIC9.34□□□□□ -0.91
Sdc1P18828 Drap1-210ENSMUST00000148219 727 ntTSL 3 BASIC9.34□□□□□ -0.91
Sdc1P18828 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Sdc1P18828 Ip6k2-210ENSMUST00000194875 748 ntTSL 2 BASIC9.34□□□□□ -0.91
Sdc1P18828 Dnd1-ps-201ENSMUST00000196992 964 ntBASIC9.34□□□□□ -0.91
Sdc1P18828 Brsk1-205ENSMUST00000206024 1216 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Retrieved 100 of 76,532 protein–RNA pairs in 46.8 ms