Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Mob1a-201ENSMUST00000038658 4119 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Cdx1P18111 Chil1-207ENSMUST00000153856 1839 ntAPPRIS ALT2 TSL 1 (best) BASIC9.34□□□□□ -0.91
Cdx1P18111 Rasgrp4-213ENSMUST00000204845 3182 ntTSL 5 BASIC9.34□□□□□ -0.91
Cdx1P18111 Tbl2-204ENSMUST00000153183 7488 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Cdx1P18111 Pafah1b3-202ENSMUST00000108410 689 ntTSL 3 BASIC9.34□□□□□ -0.91
Cdx1P18111 Rps19-203ENSMUST00000108430 774 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Cdx1P18111 Gm13394-201ENSMUST00000121658 1000 ntBASIC9.34□□□□□ -0.91
Cdx1P18111 Gm14760-201ENSMUST00000121831 999 ntBASIC9.34□□□□□ -0.91
Cdx1P18111 Tead1-207ENSMUST00000165036 1248 ntTSL 5 BASIC9.34□□□□□ -0.91
Cdx1P18111 Tead1-212ENSMUST00000171197 1074 ntTSL 5 BASIC9.34□□□□□ -0.91
Cdx1P18111 Gm8738-201ENSMUST00000172606 329 ntBASIC9.34□□□□□ -0.91
Cdx1P18111 Gm26956-201ENSMUST00000182176 986 ntBASIC9.34□□□□□ -0.91
Cdx1P18111 Gm27017-201ENSMUST00000183031 656 ntTSL 3 BASIC9.34□□□□□ -0.91
Cdx1P18111 Gm27230-202ENSMUST00000184671 857 ntTSL 3 BASIC9.34□□□□□ -0.91
Cdx1P18111 Gm38411-201ENSMUST00000197971 941 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Cdx1P18111 Ube2a-202ENSMUST00000200835 911 ntTSL 5 BASIC9.34□□□□□ -0.91
Cdx1P18111 Ube2a-209ENSMUST00000202991 715 ntAPPRIS ALT1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Cdx1P18111 Tm2d2-202ENSMUST00000210536 727 ntTSL 3 BASIC9.34□□□□□ -0.91
Cdx1P18111 Mt3-203ENSMUST00000211930 477 ntTSL 2 BASIC9.34□□□□□ -0.91
Cdx1P18111 Gm34466-201ENSMUST00000222218 505 ntTSL 2 BASIC9.34□□□□□ -0.91
Cdx1P18111 AC122371.3-201ENSMUST00000223402 1061 ntBASIC9.34□□□□□ -0.91
Cdx1P18111 Nrf1-208ENSMUST00000115208 2492 ntTSL 5 BASIC9.34□□□□□ -0.91
Cdx1P18111 Pa2g4-202ENSMUST00000131728 2483 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Cdx1P18111 Tardbp-209ENSMUST00000165113 6495 ntTSL 5 BASIC9.34□□□□□ -0.91
Cdx1P18111 Mab21l2-201ENSMUST00000077524 2703 ntAPPRIS P1 BASIC9.34□□□□□ -0.91
Cdx1P18111 Mitf-201ENSMUST00000043628 1921 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Cdx1P18111 Als2-204ENSMUST00000163058 5379 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Cdx1P18111 Itga11-201ENSMUST00000034774 4969 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Cdx1P18111 Nccrp1-201ENSMUST00000057974 1531 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Cdx1P18111 AI593442-201ENSMUST00000098768 5615 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Cdx1P18111 Edil3-202ENSMUST00000081769 5317 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Cdx1P18111 Pced1a-201ENSMUST00000089581 3496 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Cdx1P18111 Gpr35-202ENSMUST00000064480 3409 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Cdx1P18111 Rnf20-210ENSMUST00000167496 4312 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Cdx1P18111 Spata5-202ENSMUST00000108112 3295 ntAPPRIS ALT2 TSL 1 (best) BASIC9.34□□□□□ -0.91
Cdx1P18111 Npy5r-203ENSMUST00000212563 1747 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.92
Cdx1P18111 Phc1-203ENSMUST00000112600 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC9.34□□□□□ -0.92
Cdx1P18111 Mlkl-202ENSMUST00000120432 1976 ntAPPRIS P3 TSL 1 (best) BASIC9.33□□□□□ -0.92
Cdx1P18111 Tank-204ENSMUST00000112501 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC9.33□□□□□ -0.92
Cdx1P18111 Ikbkg-205ENSMUST00000114129 2222 ntAPPRIS P3 TSL 1 (best) BASIC9.33□□□□□ -0.92
Cdx1P18111 Fbln2-202ENSMUST00000113498 4644 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
Cdx1P18111 Myocd-203ENSMUST00000108695 5114 ntAPPRIS ALT2 TSL 1 (best) BASIC9.33□□□□□ -0.92
Cdx1P18111 Ctc1-202ENSMUST00000116359 3978 ntAPPRIS P3 TSL 1 (best) BASIC9.33□□□□□ -0.92
Cdx1P18111 Gm45765-202ENSMUST00000212921 1313 ntTSL 5 BASIC9.33□□□□□ -0.92
Cdx1P18111 Qtrt2-201ENSMUST00000023387 2838 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Cdx1P18111 Nsd3-203ENSMUST00000136107 3818 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
Cdx1P18111 Mybpc3-203ENSMUST00000169776 4163 ntAPPRIS P2 TSL 5 BASIC9.33□□□□□ -0.92
Cdx1P18111 Exosc2-201ENSMUST00000038474 1686 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Cdx1P18111 Vamp1-202ENSMUST00000063588 1400 ntTSL 2 BASIC9.33□□□□□ -0.92
Cdx1P18111 Cd74-202ENSMUST00000097563 1410 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Cdx1P18111 Fastkd5-201ENSMUST00000110262 3015 ntAPPRIS P1 TSL 2 BASIC9.33□□□□□ -0.92
Cdx1P18111 Abcc10-204ENSMUST00000167360 4866 ntAPPRIS ALT2 TSL 1 (best) BASIC9.33□□□□□ -0.92
Cdx1P18111 Aebp1-202ENSMUST00000109829 2541 ntAPPRIS ALT2 TSL 1 (best) BASIC9.33□□□□□ -0.92
Cdx1P18111 Zfp710-203ENSMUST00000166250 3606 ntAPPRIS ALT2 TSL 1 (best) BASIC9.33□□□□□ -0.92
Cdx1P18111 Tsc22d4-202ENSMUST00000100539 3983 ntAPPRIS P2 TSL 1 (best) BASIC9.33□□□□□ -0.92
Cdx1P18111 Ppat-202ENSMUST00000140076 3981 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Cdx1P18111 AC160405.1-201ENSMUST00000218207 1545 ntBASIC9.33□□□□□ -0.92
Cdx1P18111 Pomgnt1-204ENSMUST00000120083 2953 ntAPPRIS P1 TSL 5 BASIC9.33□□□□□ -0.92
Cdx1P18111 Gm12316-201ENSMUST00000125853 406 ntTSL 5 BASIC9.33□□□□□ -0.92
Cdx1P18111 4933407E24Rik-201ENSMUST00000133499 969 ntTSL 2 BASIC9.33□□□□□ -0.92
Cdx1P18111 Snhg17-206ENSMUST00000152125 1046 ntTSL 3 BASIC9.33□□□□□ -0.92
Cdx1P18111 Spata3-210ENSMUST00000153247 884 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
Cdx1P18111 2010320M18Rik-201ENSMUST00000191396 1009 ntBASIC9.33□□□□□ -0.92
Cdx1P18111 Gm37388-201ENSMUST00000193984 429 ntAPPRIS P1 TSL 5 BASIC9.33□□□□□ -0.92
Cdx1P18111 Nanos3-202ENSMUST00000210202 692 ntAPPRIS ALT2 TSL 1 (best) BASIC9.33□□□□□ -0.92
Cdx1P18111 Gm5363-201ENSMUST00000211927 938 ntBASIC9.33□□□□□ -0.92
Cdx1P18111 AC069562.3-201ENSMUST00000225387 587 ntBASIC9.33□□□□□ -0.92
Cdx1P18111 Mettl6-204ENSMUST00000227595 1027 ntBASIC9.33□□□□□ -0.92
Cdx1P18111 Morn3-201ENSMUST00000031437 1128 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Cdx1P18111 Fgl1-201ENSMUST00000034003 1120 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Cdx1P18111 Gm14149-201ENSMUST00000123048 1853 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
Cdx1P18111 Atp9b-201ENSMUST00000091790 5357 ntAPPRIS ALT2 TSL 5 BASIC9.33□□□□□ -0.92
Cdx1P18111 Dffa-201ENSMUST00000030816 2457 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Cdx1P18111 Ehmt1-205ENSMUST00000114432 4539 ntAPPRIS ALT2 TSL 5 BASIC9.33□□□□□ -0.92
Cdx1P18111 Rasgrp4-211ENSMUST00000203380 3077 ntTSL 5 BASIC9.33□□□□□ -0.92
Cdx1P18111 Ints6l-201ENSMUST00000039374 3766 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Cdx1P18111 Robo1-201ENSMUST00000023600 7563 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Cdx1P18111 Tirap-203ENSMUST00000176531 2310 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Cdx1P18111 Gm35021-201ENSMUST00000210105 2329 ntTSL 5 BASIC9.33□□□□□ -0.92
Cdx1P18111 Poc1a-201ENSMUST00000072206 2337 ntAPPRIS P2 TSL 1 (best) BASIC9.33□□□□□ -0.92
Cdx1P18111 Gpc4-201ENSMUST00000033450 2651 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Cdx1P18111 Sertad2-201ENSMUST00000093292 5647 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Cdx1P18111 Saxo2-201ENSMUST00000056728 2783 ntAPPRIS P2 TSL 1 (best) BASIC9.33□□□□□ -0.92
Cdx1P18111 Gm28774-201ENSMUST00000187087 1498 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
Cdx1P18111 Marveld2-204ENSMUST00000225754 3111 ntAPPRIS P1 BASIC9.33□□□□□ -0.92
Cdx1P18111 Zbtb43-203ENSMUST00000113156 1828 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
Cdx1P18111 Tgm2-201ENSMUST00000103122 3596 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Cdx1P18111 Tasp1-203ENSMUST00000110079 2258 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Cdx1P18111 H2-M10.3-201ENSMUST00000073546 1593 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Cdx1P18111 Atp4a-204ENSMUST00000170371 3447 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
Cdx1P18111 Lrtm1-203ENSMUST00000224760 3060 ntBASIC9.33□□□□□ -0.92
Cdx1P18111 Dph6-203ENSMUST00000102542 2734 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Cdx1P18111 Pax6-204ENSMUST00000111083 2370 ntAPPRIS ALT1 TSL 5 BASIC9.32□□□□□ -0.92
Cdx1P18111 C4a-207ENSMUST00000160679 5371 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
Cdx1P18111 Nr1h3-203ENSMUST00000111355 1672 ntTSL 5 BASIC9.32□□□□□ -0.92
Cdx1P18111 Myh10-204ENSMUST00000108673 1315 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
Cdx1P18111 Ikbkb-202ENSMUST00000063401 3977 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
Cdx1P18111 Lingo1-206ENSMUST00000210032 3627 ntTSL 5 BASIC9.32□□□□□ -0.92
Cdx1P18111 Gm16169-202ENSMUST00000162432 2128 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
Cdx1P18111 Dntt-201ENSMUST00000051806 2128 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
Retrieved 100 of 76,532 protein–RNA pairs in 52.2 ms