Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Tmprss3-201ENSMUST00000024833 2731 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col1a1P11087 Klhl15-201ENSMUST00000096369 3944 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Col1a1P11087 Sin3a-208ENSMUST00000168678 5206 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col1a1P11087 Nlrc3-203ENSMUST00000177551 5403 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
Col1a1P11087 C1qtnf3-201ENSMUST00000022853 2338 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col1a1P11087 Atp8a2-202ENSMUST00000131670 1725 ntTSL 2 BASIC13.35□□□□□ -0.27
Col1a1P11087 Gm20671-201ENSMUST00000144673 1731 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Col1a1P11087 Spata7-201ENSMUST00000048402 2052 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col1a1P11087 Gm36975-201ENSMUST00000194105 1828 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Col1a1P11087 Gm37122-201ENSMUST00000195313 1567 ntBASIC13.35□□□□□ -0.27
Col1a1P11087 Ptp4a1-201ENSMUST00000027232 4145 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col1a1P11087 Zbtb39-201ENSMUST00000054287 5960 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col1a1P11087 Ass1-201ENSMUST00000102840 1696 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col1a1P11087 Gm31816-202ENSMUST00000209591 1332 ntTSL 5 BASIC13.35□□□□□ -0.27
Col1a1P11087 Yod1-201ENSMUST00000049813 6128 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col1a1P11087 Polm-202ENSMUST00000109837 2697 ntTSL 5 BASIC13.35□□□□□ -0.27
Col1a1P11087 Traf6-201ENSMUST00000004949 6169 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col1a1P11087 Map2k4-201ENSMUST00000046963 3695 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col1a1P11087 Anp32e-204ENSMUST00000168106 2890 ntTSL 5 BASIC13.35□□□□□ -0.27
Col1a1P11087 Zfp618-203ENSMUST00000107415 8826 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
Col1a1P11087 Lims1-202ENSMUST00000020078 4327 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col1a1P11087 Fga-201ENSMUST00000029630 2083 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Col1a1P11087 Gnat2-201ENSMUST00000058669 2054 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col1a1P11087 Cdc20b-203ENSMUST00000181117 1608 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
Col1a1P11087 Gm42432-201ENSMUST00000197902 1617 ntBASIC13.35□□□□□ -0.27
Col1a1P11087 Dner-201ENSMUST00000049126 3632 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col1a1P11087 Ifna9-201ENSMUST00000102807 573 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
Col1a1P11087 Atp5g3-202ENSMUST00000111996 723 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
Col1a1P11087 1700011M02Rik-201ENSMUST00000113602 420 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col1a1P11087 Hint1-202ENSMUST00000117710 580 ntTSL 2 BASIC13.35□□□□□ -0.27
Col1a1P11087 Gm24078-201ENSMUST00000158184 103 ntBASIC13.35□□□□□ -0.27
Col1a1P11087 Tex33-203ENSMUST00000169575 942 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
Col1a1P11087 Gm18733-202ENSMUST00000174447 401 ntBASIC13.35□□□□□ -0.27
Col1a1P11087 Gm8234-201ENSMUST00000198523 1107 ntBASIC13.35□□□□□ -0.27
Col1a1P11087 Gm6352-201ENSMUST00000203583 1134 ntBASIC13.35□□□□□ -0.27
Col1a1P11087 Olfr1358-201ENSMUST00000204477 1064 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
Col1a1P11087 Olfr1415-203ENSMUST00000204766 403 ntTSL 3 BASIC13.35□□□□□ -0.27
Col1a1P11087 4933407L21Rik-201ENSMUST00000027426 1146 ntAPPRIS P5 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col1a1P11087 Krtap2-4-201ENSMUST00000074926 828 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
Col1a1P11087 Gm10020-201ENSMUST00000081993 612 ntBASIC13.35□□□□□ -0.27
Col1a1P11087 Gm38192-201ENSMUST00000194364 1847 ntBASIC13.35□□□□□ -0.27
Col1a1P11087 Olfr707-203ENSMUST00000210644 1817 ntAPPRIS P1 TSL 3 BASIC13.35□□□□□ -0.27
Col1a1P11087 Cnot7-211ENSMUST00000149992 2982 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col1a1P11087 Prkag3-201ENSMUST00000081636 2341 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col1a1P11087 Fcrla-201ENSMUST00000046322 1679 ntAPPRIS P4 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col1a1P11087 Gatb-203ENSMUST00000107674 1980 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Col1a1P11087 Ndrg2-201ENSMUST00000004673 2099 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col1a1P11087 Dag1-204ENSMUST00000191899 5662 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col1a1P11087 Pram1-201ENSMUST00000052079 2278 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col1a1P11087 Pdik1l-201ENSMUST00000061234 4686 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col1a1P11087 Mbp-205ENSMUST00000091789 4797 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Col1a1P11087 Mest-202ENSMUST00000124665 2665 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Col1a1P11087 Arhgap33-203ENSMUST00000207858 4337 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col1a1P11087 Tcn2-203ENSMUST00000109989 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col1a1P11087 Wnt16-202ENSMUST00000128245 3285 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Col1a1P11087 Chd4-201ENSMUST00000056889 6697 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col1a1P11087 Gck-201ENSMUST00000102920 2727 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col1a1P11087 Gm15707-201ENSMUST00000118804 996 ntBASIC13.34□□□□□ -0.27
Col1a1P11087 Gm15540-201ENSMUST00000136052 674 ntTSL 2 BASIC13.34□□□□□ -0.27
Col1a1P11087 Vmn2r-ps54-203ENSMUST00000150856 1142 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Col1a1P11087 Gm6612-201ENSMUST00000170777 395 ntBASIC13.34□□□□□ -0.27
Col1a1P11087 Mc5r-201ENSMUST00000172148 1162 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col1a1P11087 Ly6l-201ENSMUST00000177479 430 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Col1a1P11087 Gm7985-201ENSMUST00000183329 981 ntBASIC13.34□□□□□ -0.27
Col1a1P11087 Gm29164-201ENSMUST00000185454 1024 ntBASIC13.34□□□□□ -0.27
Col1a1P11087 Gm37723-201ENSMUST00000194480 565 ntBASIC13.34□□□□□ -0.27
Col1a1P11087 Gm43966-201ENSMUST00000203301 612 ntBASIC13.34□□□□□ -0.27
Col1a1P11087 Gm18001-201ENSMUST00000212023 688 ntBASIC13.34□□□□□ -0.27
Col1a1P11087 Gm45812-201ENSMUST00000212199 192 ntTSL 5 BASIC13.34□□□□□ -0.27
Col1a1P11087 Gm4657-201ENSMUST00000213839 787 ntTSL 3 BASIC13.34□□□□□ -0.27
Col1a1P11087 CT025618.1-203ENSMUST00000227008 589 ntBASIC13.34□□□□□ -0.27
Col1a1P11087 Prok2-201ENSMUST00000008273 594 ntTSL 3 BASIC13.34□□□□□ -0.27
Col1a1P11087 Oprm1-211ENSMUST00000105602 1366 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Col1a1P11087 Zfp641-201ENSMUST00000023722 4212 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col1a1P11087 Foxred2-202ENSMUST00000117725 4347 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col1a1P11087 Rab27b-201ENSMUST00000069749 2671 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col1a1P11087 Jak3-201ENSMUST00000051995 4019 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col1a1P11087 Rbm12b2-201ENSMUST00000063839 3327 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Col1a1P11087 BC017643-201ENSMUST00000038709 2417 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Col1a1P11087 Slc8a2-202ENSMUST00000211649 5261 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.27
Col1a1P11087 Itga6-202ENSMUST00000112101 4156 ntAPPRIS ALT1 TSL 5 BASIC13.33□□□□□ -0.27
Col1a1P11087 Dgcr8-202ENSMUST00000115633 4522 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Col1a1P11087 Cct4-204ENSMUST00000173867 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col1a1P11087 Tkfc-201ENSMUST00000037678 2253 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col1a1P11087 Cyp2a22-201ENSMUST00000170227 1796 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col1a1P11087 Pcdha2-202ENSMUST00000195590 4645 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col1a1P11087 Xrcc3-201ENSMUST00000021715 2422 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col1a1P11087 Lcmt2-202ENSMUST00000110674 3056 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
Col1a1P11087 Fgfr1op-201ENSMUST00000024636 3077 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col1a1P11087 Ighv8-11-201ENSMUST00000103536 358 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
Col1a1P11087 Ptgds-203ENSMUST00000114259 775 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
Col1a1P11087 Gm5395-201ENSMUST00000121650 915 ntBASIC13.33□□□□□ -0.28
Col1a1P11087 Gm16069-201ENSMUST00000131146 545 ntTSL 3 BASIC13.33□□□□□ -0.28
Col1a1P11087 Gm14232-201ENSMUST00000137176 446 ntTSL 3 BASIC13.33□□□□□ -0.28
Col1a1P11087 Mir133a-1hg-201ENSMUST00000179771 395 ntTSL 3 BASIC13.33□□□□□ -0.28
Col1a1P11087 Gm18014-201ENSMUST00000183369 817 ntBASIC13.33□□□□□ -0.28
Col1a1P11087 Gm43564-201ENSMUST00000196185 211 ntBASIC13.33□□□□□ -0.28
Col1a1P11087 Gm6518-201ENSMUST00000208450 342 ntBASIC13.33□□□□□ -0.28
Col1a1P11087 Nkain2-205ENSMUST00000219125 1166 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Col1a1P11087 Cypt12-201ENSMUST00000029080 550 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 31.2 ms