Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Saxo2-201ENSMUST00000056728 2783 ntAPPRIS P2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Pcdh1F7BJK1 Rnf7-201ENSMUST00000057500 1232 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Pcdh1F7BJK1 Rab13-201ENSMUST00000065418 1107 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Pcdh1F7BJK1 Rpl9-ps6-201ENSMUST00000078034 691 ntAPPRIS P1 BASIC10.37□□□□□ -0.75
Pcdh1F7BJK1 Itga4-201ENSMUST00000099972 9767 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Pcdh1F7BJK1 Gm20498-203ENSMUST00000166664 2284 ntAPPRIS P1 TSL 2 BASIC10.37□□□□□ -0.75
Pcdh1F7BJK1 Dhdds-201ENSMUST00000012262 3133 ntAPPRIS P2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Pcdh1F7BJK1 Exd1-201ENSMUST00000060009 6042 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Pcdh1F7BJK1 Drc7-201ENSMUST00000058479 2832 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Pcdh1F7BJK1 Ptpn4-201ENSMUST00000064091 10874 ntAPPRIS P1 TSL 5 BASIC10.37□□□□□ -0.75
Pcdh1F7BJK1 Gnl2-201ENSMUST00000030684 2366 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Pcdh1F7BJK1 Pdzk1-202ENSMUST00000107069 2219 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Pcdh1F7BJK1 Pigb-206ENSMUST00000184035 3221 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Pcdh1F7BJK1 Pla2g6-203ENSMUST00000172403 2943 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Pcdh1F7BJK1 Ncstn-201ENSMUST00000003550 2901 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Pcdh1F7BJK1 Tpd52l2-202ENSMUST00000069712 1799 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Pcdh1F7BJK1 Aire-202ENSMUST00000105395 1630 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Pcdh1F7BJK1 Grm1-203ENSMUST00000105561 4435 ntAPPRIS ALT2 TSL 1 (best) BASIC10.36□□□□□ -0.75
Pcdh1F7BJK1 Clec10a-201ENSMUST00000000327 1454 ntAPPRIS ALT2 TSL 1 (best) BASIC10.36□□□□□ -0.75
Pcdh1F7BJK1 Coro6-202ENSMUST00000052515 1476 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Pcdh1F7BJK1 Arnt2-213ENSMUST00000209133 6228 ntAPPRIS ALT2 TSL 5 BASIC10.36□□□□□ -0.75
Pcdh1F7BJK1 Tmem8b-209ENSMUST00000167153 4101 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Pcdh1F7BJK1 Tcn2-207ENSMUST00000109993 2027 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Pcdh1F7BJK1 March1-207ENSMUST00000110258 2581 ntAPPRIS ALT1 TSL 5 BASIC10.36□□□□□ -0.75
Pcdh1F7BJK1 Pin1-201ENSMUST00000034689 3843 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Pcdh1F7BJK1 Sp6-201ENSMUST00000047997 3546 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Pcdh1F7BJK1 Fut4-201ENSMUST00000061498 4074 ntAPPRIS P1 BASIC10.36□□□□□ -0.75
Pcdh1F7BJK1 Rsrc2-202ENSMUST00000057795 2270 ntAPPRIS P1 TSL 5 BASIC10.36□□□□□ -0.75
Pcdh1F7BJK1 Prr30-202ENSMUST00000187304 2104 ntAPPRIS P1 TSL 5 BASIC10.36□□□□□ -0.75
Pcdh1F7BJK1 Xpc-201ENSMUST00000032182 3634 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Pcdh1F7BJK1 Pnpla6-212ENSMUST00000208002 4444 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Pcdh1F7BJK1 5430405H02Rik-201ENSMUST00000153616 1431 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Pcdh1F7BJK1 Ankrd33-201ENSMUST00000070875 1442 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Pcdh1F7BJK1 Pcdhgb4-202ENSMUST00000195363 4665 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Pcdh1F7BJK1 Dll4-201ENSMUST00000102517 3747 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Pcdh1F7BJK1 Lnx1-202ENSMUST00000087161 2753 ntAPPRIS P1 TSL 5 BASIC10.36□□□□□ -0.75
Pcdh1F7BJK1 Dusp22-202ENSMUST00000095914 3015 ntAPPRIS P4 TSL 1 (best) BASIC10.36□□□□□ -0.75
Pcdh1F7BJK1 Myl2-203ENSMUST00000111751 889 ntAPPRIS P1 TSL 3 BASIC10.36□□□□□ -0.75
Pcdh1F7BJK1 Mrps17-207ENSMUST00000121813 868 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Pcdh1F7BJK1 Erdr1-201ENSMUST00000177591 774 ntAPPRIS P5 TSL 5 BASIC10.36□□□□□ -0.75
Pcdh1F7BJK1 Gm26778-201ENSMUST00000181443 3805 ntTSL 5 BASIC10.36□□□□□ -0.75
Pcdh1F7BJK1 Cox6b2-204ENSMUST00000182173 391 ntTSL 2 BASIC10.36□□□□□ -0.75
Pcdh1F7BJK1 Gm28638-201ENSMUST00000188152 288 ntTSL 5 BASIC10.36□□□□□ -0.75
Pcdh1F7BJK1 Ube2f-210ENSMUST00000191368 1110 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Pcdh1F7BJK1 Gm38266-201ENSMUST00000194931 421 ntBASIC10.36□□□□□ -0.75
Pcdh1F7BJK1 Abhd4-208ENSMUST00000199338 868 ntTSL 3 BASIC10.36□□□□□ -0.75
Pcdh1F7BJK1 Ube2a-202ENSMUST00000200835 911 ntTSL 5 BASIC10.36□□□□□ -0.75
Pcdh1F7BJK1 Ube2a-209ENSMUST00000202991 715 ntAPPRIS ALT1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Pcdh1F7BJK1 Gm44066-201ENSMUST00000203263 519 ntTSL 3 BASIC10.36□□□□□ -0.75
Pcdh1F7BJK1 Gm11361-201ENSMUST00000223428 607 ntAPPRIS P1 BASIC10.36□□□□□ -0.75
Pcdh1F7BJK1 1810062G17Rik-201ENSMUST00000029268 911 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Pcdh1F7BJK1 Prss34-201ENSMUST00000037453 1216 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Pcdh1F7BJK1 Klk1b7-ps-201ENSMUST00000078897 448 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Pcdh1F7BJK1 Gm8752-201ENSMUST00000173427 1694 ntBASIC10.36□□□□□ -0.75
Pcdh1F7BJK1 Gsdmc2-202ENSMUST00000188404 2078 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Pcdh1F7BJK1 Chmp1b-202ENSMUST00000210564 2490 ntAPPRIS P1 BASIC10.36□□□□□ -0.75
Pcdh1F7BJK1 Angel1-201ENSMUST00000021682 3850 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Pcdh1F7BJK1 Gphb5-201ENSMUST00000051079 1612 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Pcdh1F7BJK1 Arhgap11a-202ENSMUST00000110947 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC10.36□□□□□ -0.75
Pcdh1F7BJK1 Magi1-203ENSMUST00000093769 4598 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Pcdh1F7BJK1 Ss18-202ENSMUST00000040964 4153 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Pcdh1F7BJK1 B230312C02Rik-201ENSMUST00000145549 1703 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Pcdh1F7BJK1 Gm807-201ENSMUST00000181742 1723 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Pcdh1F7BJK1 Gm18798-201ENSMUST00000187264 1700 ntBASIC10.36□□□□□ -0.75
Pcdh1F7BJK1 Uba1y-ps1-201ENSMUST00000188314 1708 ntBASIC10.36□□□□□ -0.75
Pcdh1F7BJK1 Dpt-201ENSMUST00000027861 1724 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Pcdh1F7BJK1 Lrrc55-201ENSMUST00000099930 2217 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Pcdh1F7BJK1 Slc6a2-202ENSMUST00000165470 6007 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Pcdh1F7BJK1 Crot-201ENSMUST00000003720 2996 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Pcdh1F7BJK1 1810053B23Rik-205ENSMUST00000188056 1592 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
Pcdh1F7BJK1 Arc-202ENSMUST00000110009 3054 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Pcdh1F7BJK1 Arc-201ENSMUST00000023268 3055 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Pcdh1F7BJK1 Sgk2-201ENSMUST00000018012 2693 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Pcdh1F7BJK1 Sh3tc2-201ENSMUST00000051720 4536 ntAPPRIS P1 TSL 2 BASIC10.35□□□□□ -0.75
Pcdh1F7BJK1 Limk2-201ENSMUST00000101638 3514 ntAPPRIS P4 TSL 1 (best) BASIC10.35□□□□□ -0.75
Pcdh1F7BJK1 Gm26660-202ENSMUST00000223620 4112 ntBASIC10.35□□□□□ -0.75
Pcdh1F7BJK1 Pcdhb14-201ENSMUST00000052387 8695 ntAPPRIS P1 BASIC10.35□□□□□ -0.75
Pcdh1F7BJK1 Nup210-201ENSMUST00000032179 7037 ntAPPRIS P2 TSL 1 (best) BASIC10.35□□□□□ -0.75
Pcdh1F7BJK1 Tnnt3-209ENSMUST00000105947 780 ntAPPRIS ALT2 TSL 5 BASIC10.35□□□□□ -0.75
Pcdh1F7BJK1 Tnnt3-217ENSMUST00000105957 1028 ntAPPRIS ALT2 TSL 5 BASIC10.35□□□□□ -0.75
Pcdh1F7BJK1 Camk1d-202ENSMUST00000114987 1295 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
Pcdh1F7BJK1 Gm12463-201ENSMUST00000118271 849 ntBASIC10.35□□□□□ -0.75
Pcdh1F7BJK1 Dnase2a-206ENSMUST00000145292 678 ntTSL 5 BASIC10.35□□□□□ -0.75
Pcdh1F7BJK1 Gm25116-201ENSMUST00000157191 122 ntBASIC10.35□□□□□ -0.75
Pcdh1F7BJK1 Gm3096-201ENSMUST00000185770 364 ntBASIC10.35□□□□□ -0.75
Pcdh1F7BJK1 Svip-203ENSMUST00000209193 487 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
Pcdh1F7BJK1 Scoc-203ENSMUST00000212031 409 ntAPPRIS P3 TSL 1 (best) BASIC10.35□□□□□ -0.75
Pcdh1F7BJK1 Gm39185-201ENSMUST00000212941 540 ntTSL 5 BASIC10.35□□□□□ -0.75
Pcdh1F7BJK1 Gm7183-201ENSMUST00000213870 1005 ntBASIC10.35□□□□□ -0.75
Pcdh1F7BJK1 AC125206.1-201ENSMUST00000214070 739 ntTSL 5 BASIC10.35□□□□□ -0.75
Pcdh1F7BJK1 Gm30285-201ENSMUST00000214614 422 ntBASIC10.35□□□□□ -0.75
Pcdh1F7BJK1 Gm2553-201ENSMUST00000215986 605 ntBASIC10.35□□□□□ -0.75
Pcdh1F7BJK1 CT009713.10-202ENSMUST00000225734 696 ntBASIC10.35□□□□□ -0.75
Pcdh1F7BJK1 Ndufb4-201ENSMUST00000023514 971 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Pcdh1F7BJK1 Itgb2-201ENSMUST00000000299 2970 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Pcdh1F7BJK1 Calca-201ENSMUST00000032906 994 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Pcdh1F7BJK1 Gm9899-201ENSMUST00000065519 555 ntBASIC10.35□□□□□ -0.75
Pcdh1F7BJK1 Gm5705-201ENSMUST00000066241 711 ntBASIC10.35□□□□□ -0.75
Pcdh1F7BJK1 Zdhhc12-201ENSMUST00000081838 1187 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
Pcdh1F7BJK1 Aurkc-201ENSMUST00000086248 1154 ntAPPRIS P3 TSL 1 (best) BASIC10.35□□□□□ -0.75
Retrieved 100 of 76,532 protein–RNA pairs in 47.7 ms