Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Sgcb-201ENSMUST00000081170 3786 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Trim54Q9ERP3 Adamtsl3-204ENSMUST00000173828 2292 ntTSL 5 BASIC12.5□□□□□ -0.41
Trim54Q9ERP3 Cln3-201ENSMUST00000032962 2386 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Trim54Q9ERP3 4732414G09Rik-201ENSMUST00000156243 2422 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Trim54Q9ERP3 Arhgap12-211ENSMUST00000182383 2500 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Trim54Q9ERP3 Gm1995-201ENSMUST00000220838 2602 ntBASIC12.5□□□□□ -0.41
Trim54Q9ERP3 Rin2-202ENSMUST00000110005 4641 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Trim54Q9ERP3 Klhl3-202ENSMUST00000160860 7149 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Trim54Q9ERP3 BC048403-201ENSMUST00000065600 3123 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Trim54Q9ERP3 Cngb1-203ENSMUST00000120044 3243 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Trim54Q9ERP3 Rnf225-201ENSMUST00000045870 3239 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Trim54Q9ERP3 Krtap4-9-201ENSMUST00000105059 1059 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Trim54Q9ERP3 Gm11960-201ENSMUST00000122068 925 ntBASIC12.5□□□□□ -0.41
Trim54Q9ERP3 Gm11651-201ENSMUST00000130673 529 ntTSL 3 BASIC12.5□□□□□ -0.41
Trim54Q9ERP3 Gm15507-201ENSMUST00000133523 592 ntTSL 5 BASIC12.5□□□□□ -0.41
Trim54Q9ERP3 Nudt6-207ENSMUST00000141438 899 ntTSL 2 BASIC12.5□□□□□ -0.41
Trim54Q9ERP3 Gm14154-201ENSMUST00000142642 579 ntTSL 3 BASIC12.5□□□□□ -0.41
Trim54Q9ERP3 1700007P06Rik-201ENSMUST00000160380 823 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Trim54Q9ERP3 Gm6771-201ENSMUST00000182716 1001 ntBASIC12.5□□□□□ -0.41
Trim54Q9ERP3 Gm19744-202ENSMUST00000186135 948 ntTSL 5 BASIC12.5□□□□□ -0.41
Trim54Q9ERP3 Pdcd5-ps-201ENSMUST00000191699 381 ntBASIC12.5□□□□□ -0.41
Trim54Q9ERP3 Gm37800-202ENSMUST00000193667 553 ntTSL 3 BASIC12.5□□□□□ -0.41
Trim54Q9ERP3 Gm3017-201ENSMUST00000203603 1126 ntBASIC12.5□□□□□ -0.41
Trim54Q9ERP3 Gm11149-203ENSMUST00000215465 805 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Trim54Q9ERP3 CT573047.1-201ENSMUST00000223652 851 ntBASIC12.5□□□□□ -0.41
Trim54Q9ERP3 Eny2-204ENSMUST00000226827 558 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Trim54Q9ERP3 Krtap19-5-201ENSMUST00000053460 483 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Trim54Q9ERP3 AC108858.2-201ENSMUST00000228186 1425 ntBASIC12.5□□□□□ -0.41
Trim54Q9ERP3 Gm11413-201ENSMUST00000155822 1461 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Trim54Q9ERP3 Adcyap1r1-204ENSMUST00000165857 1491 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Trim54Q9ERP3 4930555B11Rik-201ENSMUST00000123210 1533 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Trim54Q9ERP3 Mxd1-201ENSMUST00000001184 4666 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Trim54Q9ERP3 Gm4900-201ENSMUST00000222046 1628 ntBASIC12.5□□□□□ -0.41
Trim54Q9ERP3 Kcna10-201ENSMUST00000055064 1913 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Trim54Q9ERP3 Lrrc74b-201ENSMUST00000023442 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Trim54Q9ERP3 Ttc8-201ENSMUST00000079146 2270 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Trim54Q9ERP3 Wnt5a-201ENSMUST00000063465 7010 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Trim54Q9ERP3 Zfp853-203ENSMUST00000212715 3133 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Trim54Q9ERP3 Slc20a1-202ENSMUST00000110315 3219 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Trim54Q9ERP3 Zfp341-201ENSMUST00000081926 3299 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Trim54Q9ERP3 Axin2-201ENSMUST00000052915 4260 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Trim54Q9ERP3 Lnx2-201ENSMUST00000016664 4557 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Trim54Q9ERP3 Asap1-203ENSMUST00000110115 4535 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Trim54Q9ERP3 Arhgap33-201ENSMUST00000044338 4280 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim54Q9ERP3 Arsa-202ENSMUST00000165199 3492 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim54Q9ERP3 Gm11766-201ENSMUST00000143428 3018 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Trim54Q9ERP3 Gm5936-201ENSMUST00000114116 2857 ntAPPRIS P1 TSL 3 BASIC12.49□□□□□ -0.41
Trim54Q9ERP3 Gm5640-201ENSMUST00000114119 2861 ntAPPRIS P1 TSL 3 BASIC12.49□□□□□ -0.41
Trim54Q9ERP3 DXBay18-201ENSMUST00000080324 2862 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim54Q9ERP3 Gm14685-201ENSMUST00000088459 2864 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim54Q9ERP3 Flywch1-201ENSMUST00000045517 2798 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim54Q9ERP3 Ankzf1-208ENSMUST00000152233 2739 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim54Q9ERP3 AC093022.4-203ENSMUST00000228523 2657 ntBASIC12.49□□□□□ -0.41
Trim54Q9ERP3 4930563D23Rik-201ENSMUST00000062638 2646 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
Trim54Q9ERP3 Ptcd3-201ENSMUST00000082094 2581 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim54Q9ERP3 Slc29a1-213ENSMUST00000167692 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim54Q9ERP3 Lepr-203ENSMUST00000106921 5542 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim54Q9ERP3 5530401A14Rik-201ENSMUST00000021044 1836 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim54Q9ERP3 AC138329.2-201ENSMUST00000225579 1842 ntBASIC12.49□□□□□ -0.41
Trim54Q9ERP3 Gm45428-201ENSMUST00000209619 1789 ntBASIC12.49□□□□□ -0.41
Trim54Q9ERP3 Btnl4-201ENSMUST00000065841 1761 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
Trim54Q9ERP3 Snhg17-203ENSMUST00000141809 1553 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Trim54Q9ERP3 Abat-201ENSMUST00000065987 4636 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim54Q9ERP3 Sult1a1-201ENSMUST00000106371 1370 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Trim54Q9ERP3 Sult1a1-202ENSMUST00000106372 1369 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Trim54Q9ERP3 Specc1-213ENSMUST00000202179 6676 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim54Q9ERP3 Dmrtc1b-203ENSMUST00000118842 1321 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim54Q9ERP3 Tatdn3-203ENSMUST00000110891 1214 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Trim54Q9ERP3 Tatdn3-204ENSMUST00000110893 1242 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim54Q9ERP3 Gm13703-201ENSMUST00000150705 449 ntTSL 2 BASIC12.49□□□□□ -0.41
Trim54Q9ERP3 Tro-208ENSMUST00000164071 891 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Trim54Q9ERP3 Slpi-202ENSMUST00000165980 488 ntAPPRIS ALT2 TSL 3 BASIC12.49□□□□□ -0.41
Trim54Q9ERP3 D3Ertd751e-215ENSMUST00000195882 680 ntAPPRIS P3 TSL 2 BASIC12.49□□□□□ -0.41
Trim54Q9ERP3 AC120394.2-201ENSMUST00000213905 702 ntTSL 5 BASIC12.49□□□□□ -0.41
Trim54Q9ERP3 Gm19046-201ENSMUST00000221263 1298 ntBASIC12.49□□□□□ -0.41
Trim54Q9ERP3 Gm18856-203ENSMUST00000222015 483 ntTSL 2 BASIC12.49□□□□□ -0.41
Trim54Q9ERP3 Chmp3-202ENSMUST00000065364 998 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim54Q9ERP3 Olfr1047-201ENSMUST00000099901 960 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
Trim54Q9ERP3 Bmp1-201ENSMUST00000022693 3684 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim54Q9ERP3 Cul5-201ENSMUST00000034529 3585 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim54Q9ERP3 Itgb4-204ENSMUST00000106460 5919 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Trim54Q9ERP3 Adck2-204ENSMUST00000140364 3542 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim54Q9ERP3 Zdhhc20-201ENSMUST00000089473 5186 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim54Q9ERP3 Cchcr1-205ENSMUST00000173903 3054 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Trim54Q9ERP3 Spata33-202ENSMUST00000212161 2941 ntTSL 2 BASIC12.49□□□□□ -0.41
Trim54Q9ERP3 Pex26-201ENSMUST00000088561 4093 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim54Q9ERP3 Usp14-201ENSMUST00000092096 2360 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim54Q9ERP3 Pdxk-201ENSMUST00000041616 5124 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim54Q9ERP3 Camk2g-203ENSMUST00000100837 3564 ntAPPRIS ALT1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim54Q9ERP3 Timd2-201ENSMUST00000055102 1941 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim54Q9ERP3 Ildr1-201ENSMUST00000023617 3042 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trim54Q9ERP3 Ankrd53-201ENSMUST00000014891 1739 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trim54Q9ERP3 Zbtb45-205ENSMUST00000210282 3908 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trim54Q9ERP3 Mirt1-202ENSMUST00000180667 1633 ntTSL 5 BASIC12.48□□□□□ -0.41
Trim54Q9ERP3 Aknad1-202ENSMUST00000133931 2603 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trim54Q9ERP3 Psmd9-201ENSMUST00000100729 2597 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trim54Q9ERP3 Spert-203ENSMUST00000165569 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trim54Q9ERP3 Pdlim2-201ENSMUST00000022681 1523 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trim54Q9ERP3 Synpo-202ENSMUST00000115318 4479 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trim54Q9ERP3 Ccl27a-204ENSMUST00000108035 731 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 31.6 ms