Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Gm9244-201ENSMUST00000056767 2129 ntBASIC15.74■□□□□ 0.11
Usp40Q8BWR4 Gm6024-201ENSMUST00000117850 1558 ntBASIC15.74■□□□□ 0.11
Usp40Q8BWR4 Qrich1-201ENSMUST00000006851 3331 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Usp40Q8BWR4 Rgp1-202ENSMUST00000107886 5888 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
Usp40Q8BWR4 Tfr2-201ENSMUST00000031729 2926 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Usp40Q8BWR4 Hyal3-202ENSMUST00000148440 1380 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
Usp40Q8BWR4 Sik2-205ENSMUST00000176663 4107 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
Usp40Q8BWR4 Tacc2-201ENSMUST00000033141 3940 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
Usp40Q8BWR4 Jak1-201ENSMUST00000102781 4906 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Usp40Q8BWR4 Nhs-202ENSMUST00000087085 8805 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Usp40Q8BWR4 Pcdh8-204ENSMUST00000195355 3704 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Usp40Q8BWR4 Kcna1-201ENSMUST00000055168 4031 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Usp40Q8BWR4 Pgr-204ENSMUST00000189181 6889 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Usp40Q8BWR4 Gm45218-201ENSMUST00000205533 1678 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Usp40Q8BWR4 Tbx4-203ENSMUST00000108047 3153 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
Usp40Q8BWR4 Dgcr2-203ENSMUST00000117082 2987 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Usp40Q8BWR4 Bace1-201ENSMUST00000034591 6058 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Usp40Q8BWR4 Steap3-202ENSMUST00000112640 2752 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Usp40Q8BWR4 Wif1-201ENSMUST00000020439 2294 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Usp40Q8BWR4 Il13ra1-201ENSMUST00000033418 3712 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Usp40Q8BWR4 Esrp1-201ENSMUST00000043781 3743 ntTSL 5 BASIC15.73■□□□□ 0.11
Usp40Q8BWR4 Fcrl1-203ENSMUST00000167200 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Usp40Q8BWR4 Pcdhgb6-201ENSMUST00000003599 4684 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Usp40Q8BWR4 Lsp1-211ENSMUST00000149521 1910 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Usp40Q8BWR4 Ctr9-201ENSMUST00000005749 4300 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Usp40Q8BWR4 Gripap1-202ENSMUST00000101694 2867 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
Usp40Q8BWR4 Cat-202ENSMUST00000111168 779 ntTSL 3 BASIC15.73■□□□□ 0.11
Usp40Q8BWR4 Ice2-202ENSMUST00000117246 1201 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Usp40Q8BWR4 1700123M08Rik-202ENSMUST00000146154 770 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Usp40Q8BWR4 Prr33-202ENSMUST00000151580 399 ntTSL 5 BASIC15.73■□□□□ 0.11
Usp40Q8BWR4 Gm25343-201ENSMUST00000157460 107 ntBASIC15.73■□□□□ 0.11
Usp40Q8BWR4 Gm4982-201ENSMUST00000160440 1098 ntBASIC15.73■□□□□ 0.11
Usp40Q8BWR4 Gm25951-201ENSMUST00000175330 64 ntBASIC15.73■□□□□ 0.11
Usp40Q8BWR4 Nras-208ENSMUST00000200069 831 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
Usp40Q8BWR4 Gm4604-201ENSMUST00000025040 390 ntBASIC15.73■□□□□ 0.11
Usp40Q8BWR4 Aimp1-201ENSMUST00000029663 1126 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Usp40Q8BWR4 Tdpoz3-201ENSMUST00000081780 1098 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
Usp40Q8BWR4 Mok-203ENSMUST00000084974 1132 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Usp40Q8BWR4 Prss3-201ENSMUST00000096003 822 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Usp40Q8BWR4 Bcl11b-201ENSMUST00000066060 8111 ntAPPRIS P4 TSL 1 (best) BASIC15.73■□□□□ 0.11
Usp40Q8BWR4 Ap1s2-203ENSMUST00000112294 3199 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Usp40Q8BWR4 Prdm9-205ENSMUST00000147532 1447 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Usp40Q8BWR4 Gm44056-201ENSMUST00000204623 1427 ntBASIC15.73■□□□□ 0.11
Usp40Q8BWR4 Kdm4b-201ENSMUST00000025036 4577 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Usp40Q8BWR4 Syt1-202ENSMUST00000105276 4820 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Usp40Q8BWR4 Arid4a-201ENSMUST00000046305 4998 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
Usp40Q8BWR4 Gm43102-201ENSMUST00000201004 2324 ntBASIC15.73■□□□□ 0.11
Usp40Q8BWR4 Asrgl1-201ENSMUST00000049948 4195 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Usp40Q8BWR4 Rac1-201ENSMUST00000080537 4159 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Usp40Q8BWR4 4833422M21Rik-203ENSMUST00000181747 1365 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Usp40Q8BWR4 Ephb1-202ENSMUST00000085169 4101 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Usp40Q8BWR4 Slc38a3-201ENSMUST00000010208 2585 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Usp40Q8BWR4 Eng-202ENSMUST00000113272 3021 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Usp40Q8BWR4 Snph-202ENSMUST00000094456 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Usp40Q8BWR4 Cxcr5-202ENSMUST00000179828 2824 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
Usp40Q8BWR4 Akr1d1-201ENSMUST00000040987 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Usp40Q8BWR4 Cdrt4os1-201ENSMUST00000130177 2090 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Usp40Q8BWR4 Lgsn-201ENSMUST00000062560 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Usp40Q8BWR4 Alg12-201ENSMUST00000043087 1793 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Usp40Q8BWR4 Spem2-201ENSMUST00000056941 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Usp40Q8BWR4 Ankrd17-201ENSMUST00000014421 10458 ntAPPRIS P4 TSL 5 BASIC15.72■□□□□ 0.11
Usp40Q8BWR4 Platr19-201ENSMUST00000171380 1466 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Usp40Q8BWR4 Rps9-202ENSMUST00000108623 1347 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Usp40Q8BWR4 Sorbs3-202ENSMUST00000227259 2481 ntAPPRIS ALT2 BASIC15.72■□□□□ 0.11
Usp40Q8BWR4 Mtus1-202ENSMUST00000059115 6548 ntTSL 5 BASIC15.72■□□□□ 0.11
Usp40Q8BWR4 1700123L14Rik-201ENSMUST00000090061 1747 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
Usp40Q8BWR4 Macrod2-204ENSMUST00000110062 3554 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Usp40Q8BWR4 Prkcg-201ENSMUST00000100301 3127 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Usp40Q8BWR4 Gm13351-201ENSMUST00000118087 414 ntBASIC15.72■□□□□ 0.11
Usp40Q8BWR4 Gm13549-201ENSMUST00000118339 796 ntBASIC15.72■□□□□ 0.11
Usp40Q8BWR4 Gm12705-201ENSMUST00000129460 872 ntTSL 2 BASIC15.72■□□□□ 0.11
Usp40Q8BWR4 Gm28038-201ENSMUST00000143119 378 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
Usp40Q8BWR4 Gm11417-201ENSMUST00000150536 920 ntTSL 2 BASIC15.72■□□□□ 0.11
Usp40Q8BWR4 Gm19246-201ENSMUST00000173599 255 ntBASIC15.72■□□□□ 0.11
Usp40Q8BWR4 A930005H10Rik-204ENSMUST00000185681 625 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Usp40Q8BWR4 A930005H10Rik-206ENSMUST00000188260 739 ntTSL 2 BASIC15.72■□□□□ 0.11
Usp40Q8BWR4 Shisa5-205ENSMUST00000197099 742 ntTSL 3 BASIC15.72■□□□□ 0.11
Usp40Q8BWR4 Pet100-203ENSMUST00000207389 363 ntTSL 2 BASIC15.72■□□□□ 0.11
Usp40Q8BWR4 Gm9111-201ENSMUST00000219394 709 ntBASIC15.72■□□□□ 0.11
Usp40Q8BWR4 Id2-203ENSMUST00000222667 958 ntBASIC15.72■□□□□ 0.11
Usp40Q8BWR4 Pcgf5-204ENSMUST00000224772 1266 ntAPPRIS ALT1 BASIC15.72■□□□□ 0.11
Usp40Q8BWR4 AC159002.1-201ENSMUST00000226714 924 ntBASIC15.72■□□□□ 0.11
Usp40Q8BWR4 Myoz2-201ENSMUST00000029761 1181 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Usp40Q8BWR4 Hsd17b3-201ENSMUST00000039832 1131 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Usp40Q8BWR4 2310057N15Rik-201ENSMUST00000054223 1028 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
Usp40Q8BWR4 Ctxn2-201ENSMUST00000099452 1028 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Usp40Q8BWR4 Aldh6a1-201ENSMUST00000085192 3399 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Usp40Q8BWR4 Entpd4-201ENSMUST00000064831 1842 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
Usp40Q8BWR4 Cyp27b1-201ENSMUST00000165764 2380 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Usp40Q8BWR4 Esr1-201ENSMUST00000067086 4344 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Usp40Q8BWR4 Lgi4-201ENSMUST00000039775 4037 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Usp40Q8BWR4 1110032A03Rik-201ENSMUST00000042468 2082 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
Usp40Q8BWR4 Zdhhc6-205ENSMUST00000224291 2603 ntBASIC15.72■□□□□ 0.11
Usp40Q8BWR4 Arhgef10l-202ENSMUST00000069623 4531 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Usp40Q8BWR4 Cmklr1-201ENSMUST00000047936 2882 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Usp40Q8BWR4 Sparc-201ENSMUST00000018737 2300 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
Usp40Q8BWR4 Dlg4-203ENSMUST00000108588 3457 ntAPPRIS ALT1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Usp40Q8BWR4 Zfp558-202ENSMUST00000034647 1701 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
Usp40Q8BWR4 Tex9-209ENSMUST00000184125 2794 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Usp40Q8BWR4 Gm29684-201ENSMUST00000220248 1982 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 40.9 ms