Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Gm8100-201ENSMUST00000182906 988 ntBASIC12.68□□□□□ -0.38
Lig3P97386 1110019B22Rik-202ENSMUST00000218396 989 ntTSL 5 BASIC12.68□□□□□ -0.38
Lig3P97386 Gm32635-201ENSMUST00000221493 1162 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Lig3P97386 Tbca-201ENSMUST00000046644 559 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lig3P97386 Hopx-201ENSMUST00000081964 1261 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lig3P97386 Rab7-201ENSMUST00000095048 1275 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lig3P97386 Plcb2-206ENSMUST00000159756 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lig3P97386 Atl3-202ENSMUST00000170373 6474 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Lig3P97386 Pex11g-201ENSMUST00000004686 2870 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lig3P97386 Igsf1-204ENSMUST00000114893 2671 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Lig3P97386 Slc14a2-202ENSMUST00000163367 1428 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Lig3P97386 Gm28719-201ENSMUST00000187779 1757 ntBASIC12.68□□□□□ -0.38
Lig3P97386 Mfsd13b-205ENSMUST00000216241 1761 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Lig3P97386 Pigm-201ENSMUST00000052455 7554 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
Lig3P97386 Tfr2-201ENSMUST00000031729 2926 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lig3P97386 Nuak2-201ENSMUST00000072177 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lig3P97386 Rapgef2-202ENSMUST00000118340 6544 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Lig3P97386 6030442K20Rik-201ENSMUST00000180835 1540 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Lig3P97386 Ccdc189-201ENSMUST00000072155 2536 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lig3P97386 Aldh16a1-206ENSMUST00000209963 3537 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lig3P97386 C230024C17Rik-201ENSMUST00000190663 3337 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Lig3P97386 B230398E01Rik-201ENSMUST00000125186 1958 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Lig3P97386 H3f3b-201ENSMUST00000016703 1993 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lig3P97386 Zfp112-204ENSMUST00000215113 2628 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Lig3P97386 Gm38187-201ENSMUST00000195609 4709 ntBASIC12.67□□□□□ -0.38
Lig3P97386 Sh3pxd2a-202ENSMUST00000111800 10380 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lig3P97386 Sdad1-201ENSMUST00000031364 5020 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lig3P97386 Gfra1-209ENSMUST00000169850 3224 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lig3P97386 Pdik1l-203ENSMUST00000105877 4674 ntTSL 5 BASIC12.67□□□□□ -0.38
Lig3P97386 Gabpb1-206ENSMUST00000110425 4153 ntAPPRIS ALT1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lig3P97386 Mdk-ps1-201ENSMUST00000119782 321 ntBASIC12.67□□□□□ -0.38
Lig3P97386 Gm4726-201ENSMUST00000135604 736 ntBASIC12.67□□□□□ -0.38
Lig3P97386 Gm6019-201ENSMUST00000148369 736 ntBASIC12.67□□□□□ -0.38
Lig3P97386 Gm26782-202ENSMUST00000181697 971 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Lig3P97386 Ighv1-48-201ENSMUST00000191795 294 ntBASIC12.67□□□□□ -0.38
Lig3P97386 AA545190-201ENSMUST00000203495 1053 ntTSL 2 BASIC12.67□□□□□ -0.38
Lig3P97386 Nkg7-203ENSMUST00000206741 686 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Lig3P97386 Pgam2-201ENSMUST00000020768 840 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lig3P97386 Trappc4-206ENSMUST00000217163 1185 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Lig3P97386 1700028J19Rik-201ENSMUST00000037220 1245 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lig3P97386 Orc4-202ENSMUST00000090976 1153 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Lig3P97386 Mfsd13b-201ENSMUST00000033166 1883 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lig3P97386 Knop1-206ENSMUST00000126792 3253 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lig3P97386 Treh-201ENSMUST00000034609 2048 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lig3P97386 Trim35-201ENSMUST00000022623 3678 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lig3P97386 AC163354.1-205ENSMUST00000223262 1511 ntTSL 5 BASIC12.67□□□□□ -0.38
Lig3P97386 Plin4-202ENSMUST00000190703 5756 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lig3P97386 Vmac-202ENSMUST00000164907 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lig3P97386 Tmcc1-210ENSMUST00000204353 2851 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lig3P97386 Thsd4-202ENSMUST00000098660 8796 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lig3P97386 Trip4-202ENSMUST00000119245 4211 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lig3P97386 Plekha7-202ENSMUST00000181981 4633 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Lig3P97386 Zfp384-206ENSMUST00000112425 2691 ntTSL 5 BASIC12.66□□□□□ -0.38
Lig3P97386 Slc35a4-202ENSMUST00000050476 2362 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Lig3P97386 Ank2-217ENSMUST00000182610 2231 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Lig3P97386 Zmym3-205ENSMUST00000119699 1750 ntTSL 5 BASIC12.66□□□□□ -0.38
Lig3P97386 Mirt1-202ENSMUST00000180667 1633 ntTSL 5 BASIC12.66□□□□□ -0.38
Lig3P97386 Nmral1-203ENSMUST00000115851 1306 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Lig3P97386 Gm39204-201ENSMUST00000210045 1307 ntTSL 5 BASIC12.66□□□□□ -0.38
Lig3P97386 Arhgap1-204ENSMUST00000111331 2883 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Lig3P97386 Bbs1-201ENSMUST00000053506 5581 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Lig3P97386 Gm3765-201ENSMUST00000130985 1447 ntBASIC12.66□□□□□ -0.38
Lig3P97386 A430108G06Rik-201ENSMUST00000153461 1428 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Lig3P97386 D130017N08Rik-203ENSMUST00000196629 2265 ntBASIC12.66□□□□□ -0.38
Lig3P97386 Slc25a13-203ENSMUST00000188414 3121 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Lig3P97386 Ece1-201ENSMUST00000102518 4816 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Lig3P97386 Gm14724-201ENSMUST00000118400 537 ntBASIC12.66□□□□□ -0.38
Lig3P97386 Gm8199-201ENSMUST00000121323 823 ntBASIC12.66□□□□□ -0.38
Lig3P97386 Rab15-203ENSMUST00000121716 739 ntTSL 3 BASIC12.66□□□□□ -0.38
Lig3P97386 Gm13182-201ENSMUST00000122241 312 ntBASIC12.66□□□□□ -0.38
Lig3P97386 D630008O14Rik-202ENSMUST00000149909 1043 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Lig3P97386 Gm22144-201ENSMUST00000157402 102 ntBASIC12.66□□□□□ -0.38
Lig3P97386 Agtpbp1-219ENSMUST00000170378 653 ntTSL 3 BASIC12.66□□□□□ -0.38
Lig3P97386 Kcnip4-207ENSMUST00000176191 2116 ntTSL 5 BASIC12.66□□□□□ -0.38
Lig3P97386 2610316D01Rik-201ENSMUST00000181047 924 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Lig3P97386 Gm27910-201ENSMUST00000185004 107 ntBASIC12.66□□□□□ -0.38
Lig3P97386 8030442B05Rik-201ENSMUST00000192626 1035 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Lig3P97386 Gm2965-201ENSMUST00000198365 343 ntBASIC12.66□□□□□ -0.38
Lig3P97386 E230034D01Rik-201ENSMUST00000214440 1212 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Lig3P97386 AC159376.1-201ENSMUST00000218504 630 ntBASIC12.66□□□□□ -0.38
Lig3P97386 Polr2d-201ENSMUST00000025106 956 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Lig3P97386 Gm10288-201ENSMUST00000084614 537 ntBASIC12.66□□□□□ -0.38
Lig3P97386 Taar7e-201ENSMUST00000092656 1077 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
Lig3P97386 Lst1-201ENSMUST00000097336 415 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Lig3P97386 Zbtb6-202ENSMUST00000112932 5077 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
Lig3P97386 Tdrd3-202ENSMUST00000168275 2657 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Lig3P97386 Arhgap4-201ENSMUST00000064376 3353 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Lig3P97386 Col18a1-203ENSMUST00000105409 4791 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Lig3P97386 Cd300lg-201ENSMUST00000017453 2353 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Lig3P97386 Cyp2s1-202ENSMUST00000108395 3161 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Lig3P97386 Zfp1-203ENSMUST00000212072 1930 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Lig3P97386 Gm5136-201ENSMUST00000218023 1397 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
Lig3P97386 Phykpl-206ENSMUST00000167797 3116 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Lig3P97386 Scn5a-201ENSMUST00000065196 8287 ntAPPRIS ALT1 TSL 5 BASIC12.66□□□□□ -0.38
Lig3P97386 Gm8038-201ENSMUST00000164674 2044 ntBASIC12.66□□□□□ -0.38
Lig3P97386 Chek1-202ENSMUST00000172702 3797 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Lig3P97386 4732471J01Rik-204ENSMUST00000206436 2430 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Lig3P97386 Atxn2l-203ENSMUST00000167759 4023 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Lig3P97386 Thg1l-201ENSMUST00000011398 2250 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Lig3P97386 Casc1-203ENSMUST00000111728 2682 ntAPPRIS ALT2 TSL 2 BASIC12.65□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 71.8 ms