Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Pafah1b2-201ENSMUST00000172450 6873 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Rfx1P48377 Cdh20-201ENSMUST00000062528 4012 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Rfx1P48377 Rbm47-202ENSMUST00000094757 4643 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
Rfx1P48377 Pde4b-203ENSMUST00000097950 2756 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Rfx1P48377 Tfr2-207ENSMUST00000198866 3072 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Rfx1P48377 Ncdn-201ENSMUST00000030637 3681 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Rfx1P48377 D630003M21Rik-201ENSMUST00000046944 3910 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
Rfx1P48377 Nxpe5-203ENSMUST00000159964 3585 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
Rfx1P48377 Cdk15-201ENSMUST00000114248 1477 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Rfx1P48377 Gm8378-202ENSMUST00000167777 2624 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Rfx1P48377 Synpo2l-201ENSMUST00000057090 4394 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Rfx1P48377 S100pbp-203ENSMUST00000106059 4084 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Rfx1P48377 Atp1a2-202ENSMUST00000097464 3186 ntTSL 5 BASIC13.73□□□□□ -0.21
Rfx1P48377 Dpm2-203ENSMUST00000140592 1412 ntTSL 5 BASIC13.73□□□□□ -0.21
Rfx1P48377 Gm29245-201ENSMUST00000187332 1416 ntBASIC13.73□□□□□ -0.21
Rfx1P48377 Aak1-201ENSMUST00000003710 7203 ntAPPRIS P3 TSL 5 BASIC13.72□□□□□ -0.21
Rfx1P48377 Camk1g-201ENSMUST00000016323 2469 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Rfx1P48377 Gm18262-201ENSMUST00000222560 1946 ntBASIC13.72□□□□□ -0.21
Rfx1P48377 Aire-202ENSMUST00000105395 1630 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Rfx1P48377 Nexmif-202ENSMUST00000087879 10891 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Rfx1P48377 Gm4780-202ENSMUST00000215200 2644 ntBASIC13.72□□□□□ -0.21
Rfx1P48377 Phkg2-201ENSMUST00000033086 1570 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Rfx1P48377 Crybg3-205ENSMUST00000172910 2870 ntTSL 5 BASIC13.72□□□□□ -0.21
Rfx1P48377 Gm14005-209ENSMUST00000224993 1832 ntBASIC13.72□□□□□ -0.21
Rfx1P48377 AC167565.1-201ENSMUST00000226980 1833 ntBASIC13.72□□□□□ -0.21
Rfx1P48377 Htr2c-203ENSMUST00000112831 809 ntTSL 3 BASIC13.72□□□□□ -0.21
Rfx1P48377 Gm13869-201ENSMUST00000146978 1054 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Rfx1P48377 Gm7008-202ENSMUST00000170019 402 ntTSL 2 BASIC13.72□□□□□ -0.21
Rfx1P48377 5430405H02Rik-202ENSMUST00000176134 1196 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Rfx1P48377 1600014C10Rik-203ENSMUST00000177983 403 ntTSL 2 BASIC13.72□□□□□ -0.21
Rfx1P48377 Abhd4-208ENSMUST00000199338 868 ntTSL 3 BASIC13.72□□□□□ -0.21
Rfx1P48377 Psenen-203ENSMUST00000207747 669 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
Rfx1P48377 Dhrs2-201ENSMUST00000022820 1268 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Rfx1P48377 Hbb-y-201ENSMUST00000033229 633 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Rfx1P48377 Acyp1-202ENSMUST00000065913 448 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Rfx1P48377 Gabre-201ENSMUST00000064780 4306 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Rfx1P48377 Limd1-201ENSMUST00000026269 4848 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Rfx1P48377 Slc26a2-202ENSMUST00000146409 7814 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Rfx1P48377 Dctn1-205ENSMUST00000113919 4292 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
Rfx1P48377 Zfp558-202ENSMUST00000034647 1701 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Rfx1P48377 Metap2-201ENSMUST00000047910 4424 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Rfx1P48377 Pcdhga6-201ENSMUST00000195823 4733 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Rfx1P48377 Gjc1-202ENSMUST00000092567 1890 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Rfx1P48377 AC122273.1-201ENSMUST00000213634 2327 ntBASIC13.72□□□□□ -0.21
Rfx1P48377 Fkbp15-203ENSMUST00000098033 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Rfx1P48377 A130077B15Rik-201ENSMUST00000219429 2547 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Rfx1P48377 Abcc10-202ENSMUST00000095261 5266 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
Rfx1P48377 Ttll5-202ENSMUST00000040273 4147 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
Rfx1P48377 Gm37122-201ENSMUST00000195313 1567 ntBASIC13.71□□□□□ -0.21
Rfx1P48377 AC123619.2-202ENSMUST00000225097 1568 ntBASIC13.71□□□□□ -0.21
Rfx1P48377 Trhr2-201ENSMUST00000044123 1340 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Rfx1P48377 Gm43321-201ENSMUST00000198897 2409 ntBASIC13.71□□□□□ -0.21
Rfx1P48377 Srrm2-201ENSMUST00000088621 8564 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Rfx1P48377 Sgk1-213ENSMUST00000164659 2602 ntTSL 5 BASIC13.71□□□□□ -0.21
Rfx1P48377 Sel1l-201ENSMUST00000021347 6300 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Rfx1P48377 Tnc-201ENSMUST00000030056 6833 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Rfx1P48377 Gm11595-201ENSMUST00000107440 1200 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
Rfx1P48377 Dmrtc1a-202ENSMUST00000119624 1149 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
Rfx1P48377 Egfl7-209ENSMUST00000150404 892 ntAPPRIS P4 TSL 5 BASIC13.71□□□□□ -0.21
Rfx1P48377 AI413582-204ENSMUST00000154473 836 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Rfx1P48377 Umad1-206ENSMUST00000160705 624 ntAPPRIS P4 TSL 2 BASIC13.71□□□□□ -0.21
Rfx1P48377 Gm17099-201ENSMUST00000166780 412 ntTSL 3 BASIC13.71□□□□□ -0.21
Rfx1P48377 Gm29396-201ENSMUST00000185659 716 ntBASIC13.71□□□□□ -0.21
Rfx1P48377 Asb1-206ENSMUST00000188879 1299 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Rfx1P48377 S100a3-205ENSMUST00000200508 587 ntAPPRIS P1 TSL 3 BASIC13.71□□□□□ -0.21
Rfx1P48377 Gm18065-201ENSMUST00000221395 526 ntBASIC13.71□□□□□ -0.21
Rfx1P48377 Mal-201ENSMUST00000028853 486 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Rfx1P48377 Gm5519-201ENSMUST00000042061 513 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Rfx1P48377 Lce3d-201ENSMUST00000059053 491 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Rfx1P48377 Rab13-201ENSMUST00000065418 1107 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Rfx1P48377 A930016O22Rik-202ENSMUST00000208685 2349 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Rfx1P48377 Ticam2-201ENSMUST00000070084 2340 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Rfx1P48377 Pbx1-208ENSMUST00000188912 3970 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Rfx1P48377 Asb15-201ENSMUST00000031696 2088 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Rfx1P48377 Specc1l-204ENSMUST00000218766 4725 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Rfx1P48377 1110051M20Rik-201ENSMUST00000064652 2896 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Rfx1P48377 Numa1-201ENSMUST00000084852 7180 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Rfx1P48377 Gm15326-202ENSMUST00000128198 1422 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Rfx1P48377 Gm19178-201ENSMUST00000217524 1819 ntBASIC13.71□□□□□ -0.22
Rfx1P48377 Kcnk10-201ENSMUST00000110113 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Rfx1P48377 Tesk2-201ENSMUST00000045542 3033 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Rfx1P48377 Vti1a-201ENSMUST00000095950 3405 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Rfx1P48377 Tnfaip8l3-201ENSMUST00000098760 4403 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Rfx1P48377 4933431E20Rik-201ENSMUST00000131345 5407 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Rfx1P48377 Pias2-203ENSMUST00000168882 4984 ntAPPRIS P4 TSL 1 (best) BASIC13.71□□□□□ -0.22
Rfx1P48377 Mybpc3-203ENSMUST00000169776 4163 ntAPPRIS P2 TSL 5 BASIC13.71□□□□□ -0.22
Rfx1P48377 Cfb-202ENSMUST00000128767 2751 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Rfx1P48377 Sirt2-209ENSMUST00000170068 1585 ntTSL 5 BASIC13.71□□□□□ -0.22
Rfx1P48377 Cep112-213ENSMUST00000150863 3453 ntTSL 5 BASIC13.7□□□□□ -0.22
Rfx1P48377 Pced1a-201ENSMUST00000089581 3496 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Rfx1P48377 Snrpn-201ENSMUST00000059305 1932 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Rfx1P48377 Alx1-203ENSMUST00000167156 2689 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
Rfx1P48377 Gm38089-201ENSMUST00000193585 1514 ntBASIC13.7□□□□□ -0.22
Rfx1P48377 Lpin3-204ENSMUST00000109457 3215 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Rfx1P48377 Alms1-ps2-202ENSMUST00000161983 2290 ntBASIC13.7□□□□□ -0.22
Rfx1P48377 Xrra1-202ENSMUST00000207855 1334 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Rfx1P48377 Osr2-204ENSMUST00000228152 1324 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
Rfx1P48377 Ddr1-202ENSMUST00000097333 3593 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Rfx1P48377 Gm44663-201ENSMUST00000206898 3150 ntBASIC13.7□□□□□ -0.22
Rfx1P48377 Tcn2-207ENSMUST00000109993 2027 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 50.4 ms