Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Rps3a1-201ENSMUST00000029722 977 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Cdx1P18111 Ctrb1-201ENSMUST00000034435 878 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Cdx1P18111 Lsm7-201ENSMUST00000035775 468 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Cdx1P18111 Trem3-201ENSMUST00000048065 994 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Cdx1P18111 Mrps21-201ENSMUST00000067298 488 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Cdx1P18111 Sertad1-201ENSMUST00000008528 1233 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Cdx1P18111 Rpl7a-ps3-201ENSMUST00000090170 796 ntBASIC9.36□□□□□ -0.91
Cdx1P18111 Rpl7a-ps5-201ENSMUST00000095218 807 ntAPPRIS P1 BASIC9.36□□□□□ -0.91
Cdx1P18111 Dscaml1-201ENSMUST00000034592 6886 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Cdx1P18111 Arhgap33os-201ENSMUST00000124276 2648 ntTSL 2 BASIC9.36□□□□□ -0.91
Cdx1P18111 Nek1-208ENSMUST00000211256 4810 ntAPPRIS ALT2 TSL 1 (best) BASIC9.36□□□□□ -0.91
Cdx1P18111 Mapkap1-209ENSMUST00000147337 3111 ntAPPRIS P2 TSL 1 (best) BASIC9.36□□□□□ -0.91
Cdx1P18111 Gm13556-201ENSMUST00000132692 1412 ntTSL 3 BASIC9.36□□□□□ -0.91
Cdx1P18111 Tmem92-203ENSMUST00000162809 1437 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Cdx1P18111 Iqgap3-201ENSMUST00000071812 5756 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Cdx1P18111 Flvcr2-201ENSMUST00000040461 3435 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Cdx1P18111 Loxhd1-202ENSMUST00000096547 6595 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Cdx1P18111 Slc17a5-201ENSMUST00000052441 3236 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Cdx1P18111 Kalrn-202ENSMUST00000089655 6506 ntTSL 5 BASIC9.36□□□□□ -0.91
Cdx1P18111 Aldoc-202ENSMUST00000102478 1700 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Cdx1P18111 Zfp629-202ENSMUST00000084564 5829 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Cdx1P18111 Oxct1-201ENSMUST00000110690 3527 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Cdx1P18111 Gm42031-201ENSMUST00000209823 1885 ntTSL 5 BASIC9.36□□□□□ -0.91
Cdx1P18111 Ncam1-203ENSMUST00000192584 2525 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
Cdx1P18111 Med17-201ENSMUST00000034411 3964 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Cdx1P18111 Gm8038-201ENSMUST00000164674 2044 ntBASIC9.36□□□□□ -0.91
Cdx1P18111 Loxl3-201ENSMUST00000000707 4098 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Cdx1P18111 Lingo1-201ENSMUST00000053568 3295 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
Cdx1P18111 Recql-202ENSMUST00000100832 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC9.35□□□□□ -0.91
Cdx1P18111 AC125409.1-201ENSMUST00000223213 3370 ntBASIC9.35□□□□□ -0.91
Cdx1P18111 Mtmr12-202ENSMUST00000071993 3351 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Cdx1P18111 Sphk2-202ENSMUST00000107737 3548 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Cdx1P18111 Ces3b-202ENSMUST00000093221 2403 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Cdx1P18111 Spock2-203ENSMUST00000165024 3699 ntAPPRIS ALT2 TSL 5 BASIC9.35□□□□□ -0.91
Cdx1P18111 Gm10827-201ENSMUST00000181897 2586 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Cdx1P18111 Tshr-201ENSMUST00000021343 1339 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Cdx1P18111 Ap1s2-203ENSMUST00000112294 3199 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Cdx1P18111 Ebag9-201ENSMUST00000022964 1613 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Cdx1P18111 Dctn2-201ENSMUST00000026479 1784 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Cdx1P18111 Cyp1a2-201ENSMUST00000034860 1940 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Cdx1P18111 Pik3r5-201ENSMUST00000021283 4370 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Cdx1P18111 Zfp189-202ENSMUST00000107696 2965 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Cdx1P18111 2010111I01Rik-201ENSMUST00000021911 2979 ntAPPRIS ALT2 TSL 5 BASIC9.35□□□□□ -0.91
Cdx1P18111 Abhd18-201ENSMUST00000108077 3277 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Cdx1P18111 4931428F04Rik-202ENSMUST00000171788 3552 ntAPPRIS P1 TSL 5 BASIC9.35□□□□□ -0.91
Cdx1P18111 Nrap-204ENSMUST00000166203 5079 ntAPPRIS ALT2 TSL 5 BASIC9.35□□□□□ -0.91
Cdx1P18111 Arhgap6-204ENSMUST00000112129 2487 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Cdx1P18111 Cryba4-203ENSMUST00000112385 808 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Cdx1P18111 Fcamr-202ENSMUST00000112477 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC9.35□□□□□ -0.91
Cdx1P18111 Pqbp1-203ENSMUST00000115655 1148 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Cdx1P18111 Cbfa2t2-ps1-201ENSMUST00000117165 730 ntBASIC9.35□□□□□ -0.91
Cdx1P18111 Gm14726-201ENSMUST00000120623 896 ntBASIC9.35□□□□□ -0.91
Cdx1P18111 Ggnbp1-202ENSMUST00000122106 1107 ntAPPRIS ALT2 TSL 5 BASIC9.35□□□□□ -0.91
Cdx1P18111 Cldn18-204ENSMUST00000136429 1409 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Cdx1P18111 Sox5os1-201ENSMUST00000156994 1585 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Cdx1P18111 Prr13-204ENSMUST00000164957 1055 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Cdx1P18111 Gm17376-201ENSMUST00000166016 84 ntBASIC9.35□□□□□ -0.91
Cdx1P18111 Gm17208-201ENSMUST00000168388 535 ntBASIC9.35□□□□□ -0.91
Cdx1P18111 Ly6g5b-202ENSMUST00000172854 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC9.35□□□□□ -0.91
Cdx1P18111 Gm2310-201ENSMUST00000179217 1131 ntAPPRIS P1 TSL 5 BASIC9.35□□□□□ -0.91
Cdx1P18111 Gm4819-201ENSMUST00000182170 1009 ntBASIC9.35□□□□□ -0.91
Cdx1P18111 Gm10417-201ENSMUST00000194341 3522 ntBASIC9.35□□□□□ -0.91
Cdx1P18111 Gm43068-201ENSMUST00000201095 1273 ntBASIC9.35□□□□□ -0.91
Cdx1P18111 Gm6015-201ENSMUST00000217493 1586 ntBASIC9.35□□□□□ -0.91
Cdx1P18111 Dnajc17-201ENSMUST00000038439 1008 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Cdx1P18111 Asb6-201ENSMUST00000041726 4147 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Cdx1P18111 Themis2-201ENSMUST00000045154 3079 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Cdx1P18111 Olfr156-202ENSMUST00000079465 1099 ntAPPRIS P1 BASIC9.35□□□□□ -0.91
Cdx1P18111 Mcam-202ENSMUST00000098852 2772 ntAPPRIS ALT2 TSL 1 (best) BASIC9.35□□□□□ -0.91
Cdx1P18111 Dip2a-201ENSMUST00000036033 6322 ntAPPRIS P2 TSL 5 BASIC9.35□□□□□ -0.91
Cdx1P18111 Acsf2-201ENSMUST00000103164 3154 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Cdx1P18111 Fam71e2-202ENSMUST00000174409 2716 ntAPPRIS P1 TSL 5 BASIC9.35□□□□□ -0.91
Cdx1P18111 Gm26799-201ENSMUST00000180959 1361 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Cdx1P18111 4931406C07Rik-202ENSMUST00000178977 2650 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Cdx1P18111 Vwa7-202ENSMUST00000172499 3970 ntAPPRIS ALT2 TSL 1 (best) BASIC9.35□□□□□ -0.91
Cdx1P18111 Osbpl7-206ENSMUST00000168565 3535 ntAPPRIS ALT2 TSL 5 BASIC9.35□□□□□ -0.91
Cdx1P18111 Lasp1-201ENSMUST00000043843 3540 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Cdx1P18111 Inpp5j-201ENSMUST00000044507 3370 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Cdx1P18111 Mat2b-202ENSMUST00000101347 2053 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Cdx1P18111 Zfp775-201ENSMUST00000061720 4083 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Cdx1P18111 Bicd2-202ENSMUST00000110084 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC9.35□□□□□ -0.91
Cdx1P18111 AU041133-202ENSMUST00000201286 2634 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Cdx1P18111 Brat1-201ENSMUST00000041588 3333 ntAPPRIS P3 TSL 1 (best) BASIC9.34□□□□□ -0.91
Cdx1P18111 Dusp19-201ENSMUST00000028384 1632 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Cdx1P18111 Tubb2a-201ENSMUST00000056427 1610 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Cdx1P18111 Chd1-201ENSMUST00000024620 3196 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Cdx1P18111 Arhgap20-204ENSMUST00000130405 3881 ntAPPRIS ALT2 TSL 5 BASIC9.34□□□□□ -0.91
Cdx1P18111 Add2-203ENSMUST00000203279 1454 ntTSL 2 BASIC9.34□□□□□ -0.91
Cdx1P18111 Cast-211ENSMUST00000223206 5141 ntAPPRIS ALT2 TSL 5 BASIC9.34□□□□□ -0.91
Cdx1P18111 Zfp384-204ENSMUST00000088308 2875 ntAPPRIS P2 TSL 5 BASIC9.34□□□□□ -0.91
Cdx1P18111 Ric8a-201ENSMUST00000026558 3406 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Cdx1P18111 Stox2-206ENSMUST00000210030 2734 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Cdx1P18111 Grb10-202ENSMUST00000109653 2048 ntTSL 5 BASIC9.34□□□□□ -0.91
Cdx1P18111 Cops7a-202ENSMUST00000112439 1328 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Cdx1P18111 Gon4l-203ENSMUST00000107498 7537 ntAPPRIS P2 TSL 1 (best) BASIC9.34□□□□□ -0.91
Cdx1P18111 Bdkrb2-201ENSMUST00000001652 3792 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Cdx1P18111 Atl2-201ENSMUST00000068282 3618 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Cdx1P18111 Gm45132-201ENSMUST00000207234 2542 ntBASIC9.34□□□□□ -0.91
Cdx1P18111 Armcx3-203ENSMUST00000086884 3488 ntAPPRIS P1 TSL 5 BASIC9.34□□□□□ -0.91
Cdx1P18111 Plscr3-203ENSMUST00000108633 2785 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Retrieved 100 of 76,532 protein–RNA pairs in 52.7 ms