Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Alkbh6-201ENSMUST00000060834 982 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hmgb3O54879 Cdc26-201ENSMUST00000084525 819 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hmgb3O54879 Cryba4-201ENSMUST00000086629 746 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hmgb3O54879 Usmg5-201ENSMUST00000096014 341 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hmgb3O54879 Dmbx1-203ENSMUST00000124071 4017 ntAPPRIS P2 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hmgb3O54879 Trappc9-202ENSMUST00000089770 4047 ntAPPRIS P4 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hmgb3O54879 Pacrg-201ENSMUST00000041463 1475 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hmgb3O54879 Ing1-206ENSMUST00000210740 1866 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
Hmgb3O54879 Igf1-201ENSMUST00000062862 2292 ntTSL 2 BASIC9.5□□□□□ -0.89
Hmgb3O54879 Rab27b-201ENSMUST00000069749 2671 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hmgb3O54879 1110051M20Rik-201ENSMUST00000064652 2896 ntAPPRIS ALT1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hmgb3O54879 Lrrk1-201ENSMUST00000015277 7465 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hmgb3O54879 Sv2c-201ENSMUST00000161263 9101 ntAPPRIS P1 TSL 5 BASIC9.5□□□□□ -0.89
Hmgb3O54879 Lrp12-201ENSMUST00000022916 4109 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hmgb3O54879 Aplp2-202ENSMUST00000079758 3504 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
Hmgb3O54879 Ncstn-201ENSMUST00000003550 2901 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hmgb3O54879 Mfsd7a-201ENSMUST00000031455 2508 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hmgb3O54879 Strada-202ENSMUST00000103072 1517 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
Hmgb3O54879 Gtf2i-216ENSMUST00000173888 2820 ntTSL 5 BASIC9.5□□□□□ -0.89
Hmgb3O54879 Kcnk10-201ENSMUST00000110113 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hmgb3O54879 Napsa-201ENSMUST00000002274 1560 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hmgb3O54879 AC154671.1-201ENSMUST00000228617 1578 ntBASIC9.5□□□□□ -0.89
Hmgb3O54879 Olfr157-201ENSMUST00000214281 6617 ntAPPRIS P1 TSL 5 BASIC9.5□□□□□ -0.89
Hmgb3O54879 Nap1l1-203ENSMUST00000217908 1350 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hmgb3O54879 Msh3-202ENSMUST00000185852 3946 ntAPPRIS P3 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hmgb3O54879 Mre11a-202ENSMUST00000115632 5660 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
Hmgb3O54879 Golm1-201ENSMUST00000022039 3954 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hmgb3O54879 Anxa6-201ENSMUST00000102727 2471 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
Hmgb3O54879 Ebag9-201ENSMUST00000022964 1613 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hmgb3O54879 Spata2-201ENSMUST00000057627 4012 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hmgb3O54879 Jmjd8-201ENSMUST00000026832 2091 ntAPPRIS P2 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hmgb3O54879 Mms19-201ENSMUST00000026168 3162 ntAPPRIS ALT2 TSL 5 BASIC9.49□□□□□ -0.89
Hmgb3O54879 Dcaf11-202ENSMUST00000117236 2538 ntAPPRIS P2 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hmgb3O54879 Syt15-201ENSMUST00000035351 3623 ntAPPRIS P3 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hmgb3O54879 Nos3-202ENSMUST00000115090 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hmgb3O54879 Pxn-214ENSMUST00000212819 1689 ntTSL 5 BASIC9.49□□□□□ -0.89
Hmgb3O54879 Bin2-205ENSMUST00000182814 1901 ntTSL 5 BASIC9.49□□□□□ -0.89
Hmgb3O54879 Zscan30-202ENSMUST00000224144 1458 ntBASIC9.49□□□□□ -0.89
Hmgb3O54879 Arc-202ENSMUST00000110009 3054 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hmgb3O54879 Arc-201ENSMUST00000023268 3055 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hmgb3O54879 1700037H04Rik-202ENSMUST00000103188 1241 ntAPPRIS P3 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hmgb3O54879 Cabp1-203ENSMUST00000112112 746 ntAPPRIS ALT1 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hmgb3O54879 Tpm1-207ENSMUST00000113687 962 ntTSL 5 BASIC9.49□□□□□ -0.89
Hmgb3O54879 Tpd52-206ENSMUST00000121038 849 ntTSL 5 BASIC9.49□□□□□ -0.89
Hmgb3O54879 Mia-202ENSMUST00000121848 572 ntAPPRIS ALT2 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hmgb3O54879 Rprl1-201ENSMUST00000158050 327 ntBASIC9.49□□□□□ -0.89
Hmgb3O54879 Tldc2-202ENSMUST00000166140 639 ntAPPRIS P2 TSL 5 BASIC9.49□□□□□ -0.89
Hmgb3O54879 Txnl4b-202ENSMUST00000178445 830 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hmgb3O54879 Gm5706-201ENSMUST00000181525 993 ntBASIC9.49□□□□□ -0.89
Hmgb3O54879 Gm27437-201ENSMUST00000183429 107 ntBASIC9.49□□□□□ -0.89
Hmgb3O54879 Ffar3-202ENSMUST00000185748 1234 ntAPPRIS P1 BASIC9.49□□□□□ -0.89
Hmgb3O54879 1700029B24Rik-201ENSMUST00000194040 497 ntBASIC9.49□□□□□ -0.89
Hmgb3O54879 Olfr1415-203ENSMUST00000204766 403 ntTSL 3 BASIC9.49□□□□□ -0.89
Hmgb3O54879 Reep1-202ENSMUST00000212631 953 ntTSL 5 BASIC9.49□□□□□ -0.89
Hmgb3O54879 AC158523.3-201ENSMUST00000220664 864 ntTSL 5 BASIC9.49□□□□□ -0.89
Hmgb3O54879 AC110817.1-201ENSMUST00000225706 605 ntBASIC9.49□□□□□ -0.89
Hmgb3O54879 Tnfrsf17-201ENSMUST00000023140 815 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hmgb3O54879 Gm10254-201ENSMUST00000052888 867 ntBASIC9.49□□□□□ -0.89
Hmgb3O54879 1700061G19Rik-201ENSMUST00000025048 2677 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hmgb3O54879 Flad1-202ENSMUST00000107426 2238 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hmgb3O54879 Rps6ka1-209ENSMUST00000174481 2228 ntTSL 5 BASIC9.49□□□□□ -0.89
Hmgb3O54879 Tmcc2-201ENSMUST00000045473 3410 ntAPPRIS P3 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hmgb3O54879 Gm43242-201ENSMUST00000199507 1776 ntBASIC9.49□□□□□ -0.89
Hmgb3O54879 Ift46-201ENSMUST00000002099 4169 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hmgb3O54879 Clcn6-205ENSMUST00000137724 5198 ntAPPRIS ALT1 TSL 5 BASIC9.49□□□□□ -0.89
Hmgb3O54879 Gm9115-201ENSMUST00000120192 1348 ntBASIC9.49□□□□□ -0.89
Hmgb3O54879 Gm8793-201ENSMUST00000183069 1303 ntBASIC9.49□□□□□ -0.89
Hmgb3O54879 Rbm8a-203ENSMUST00000198027 2757 ntTSL 3 BASIC9.49□□□□□ -0.89
Hmgb3O54879 Tesk2-201ENSMUST00000045542 3033 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hmgb3O54879 Dpep2-206ENSMUST00000227363 1844 ntAPPRIS P1 BASIC9.49□□□□□ -0.89
Hmgb3O54879 Mum1l1-204ENSMUST00000113045 4523 ntAPPRIS P1 TSL 3 BASIC9.49□□□□□ -0.89
Hmgb3O54879 LMLN2-201ENSMUST00000224691 2342 ntAPPRIS P5 BASIC9.49□□□□□ -0.89
Hmgb3O54879 Smtn-210ENSMUST00000170588 3386 ntAPPRIS P2 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hmgb3O54879 4732491K20Rik-201ENSMUST00000181774 3142 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
Hmgb3O54879 Kcnj9-201ENSMUST00000062387 3857 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hmgb3O54879 Phyhd1-202ENSMUST00000091132 1353 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
Hmgb3O54879 Grem1-201ENSMUST00000099575 4148 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hmgb3O54879 Msh3-201ENSMUST00000022220 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hmgb3O54879 Hnrnph2-203ENSMUST00000074950 2426 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
Hmgb3O54879 4930581F22Rik-201ENSMUST00000093873 2402 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
Hmgb3O54879 Ppfia2-203ENSMUST00000217854 8885 ntAPPRIS P2 TSL 1 (best) BASIC9.48□□□□□ -0.89
Hmgb3O54879 Ank2-221ENSMUST00000182994 2715 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
Hmgb3O54879 Kdm3a-202ENSMUST00000167220 4853 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
Hmgb3O54879 Gm28042-203ENSMUST00000156805 2844 ntAPPRIS ALT2 TSL 5 BASIC9.48□□□□□ -0.89
Hmgb3O54879 Gaa-201ENSMUST00000026666 3363 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
Hmgb3O54879 Bnc2-202ENSMUST00000107198 3948 ntAPPRIS ALT2 TSL 5 BASIC9.48□□□□□ -0.89
Hmgb3O54879 Sema4d-201ENSMUST00000021900 4482 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
Hmgb3O54879 Nr5a2-205ENSMUST00000192929 1756 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
Hmgb3O54879 Sdr9c7-201ENSMUST00000047134 2868 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
Hmgb3O54879 Lrrfip2-213ENSMUST00000216430 1525 ntTSL 5 BASIC9.48□□□□□ -0.89
Hmgb3O54879 Chd7-202ENSMUST00000051558 10216 ntAPPRIS P1 TSL 5 BASIC9.48□□□□□ -0.89
Hmgb3O54879 Kansl1-203ENSMUST00000106971 5222 ntAPPRIS ALT2 TSL 5 BASIC9.48□□□□□ -0.89
Hmgb3O54879 Icam4-201ENSMUST00000001040 971 ntAPPRIS P2 TSL 1 (best) BASIC9.48□□□□□ -0.89
Hmgb3O54879 Ppih-203ENSMUST00000106318 800 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
Hmgb3O54879 Mrpl2-202ENSMUST00000113429 998 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
Hmgb3O54879 Eaf2-204ENSMUST00000114829 1030 ntAPPRIS P2 TSL 1 (best) BASIC9.48□□□□□ -0.89
Hmgb3O54879 Gm9431-201ENSMUST00000119765 1051 ntBASIC9.48□□□□□ -0.89
Hmgb3O54879 Mrps10-202ENSMUST00000119841 1113 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
Hmgb3O54879 Gm15610-201ENSMUST00000120584 195 ntBASIC9.48□□□□□ -0.89
Hmgb3O54879 Gm14441-201ENSMUST00000121960 540 ntBASIC9.48□□□□□ -0.89
Retrieved 100 of 76,532 protein–RNA pairs in 128 ms