Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Gm3150-201ENSMUST00000166418 204 ntBASIC11.85□□□□□ -0.51
Vps28Q9D1C8 C730034F03Rik-201ENSMUST00000168646 1280 ntAPPRIS P1 BASIC11.85□□□□□ -0.51
Vps28Q9D1C8 Mir8093-201ENSMUST00000185043 137 ntBASIC11.85□□□□□ -0.51
Vps28Q9D1C8 1700088E04Rik-206ENSMUST00000187550 1168 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Vps28Q9D1C8 Ighv6-7-201ENSMUST00000193397 357 ntAPPRIS P1 BASIC11.85□□□□□ -0.51
Vps28Q9D1C8 Gm5982-201ENSMUST00000196234 512 ntBASIC11.85□□□□□ -0.51
Vps28Q9D1C8 Calca-205ENSMUST00000205933 458 ntTSL 3 BASIC11.85□□□□□ -0.51
Vps28Q9D1C8 1500015O10Rik-201ENSMUST00000027217 902 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Vps28Q9D1C8 Crygs-201ENSMUST00000040592 708 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Vps28Q9D1C8 Gm11938-201ENSMUST00000072306 663 ntAPPRIS P1 BASIC11.85□□□□□ -0.51
Vps28Q9D1C8 Ufc1-201ENSMUST00000080001 1007 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Vps28Q9D1C8 4930523C07Rik-202ENSMUST00000097513 300 ntAPPRIS P1 BASIC11.85□□□□□ -0.51
Vps28Q9D1C8 AC160411.1-201ENSMUST00000218544 4560 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Vps28Q9D1C8 Lrp1-203ENSMUST00000121829 2887 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Vps28Q9D1C8 Rbm47-209ENSMUST00000201544 5211 ntAPPRIS P3 TSL 5 BASIC11.85□□□□□ -0.51
Vps28Q9D1C8 Bcas3-202ENSMUST00000092821 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Vps28Q9D1C8 Ophn1-201ENSMUST00000033560 7170 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Vps28Q9D1C8 Mmd2-201ENSMUST00000037048 3317 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Vps28Q9D1C8 Morf4l2-204ENSMUST00000113097 1825 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Vps28Q9D1C8 Tnn-202ENSMUST00000131919 3987 ntTSL 5 BASIC11.85□□□□□ -0.51
Vps28Q9D1C8 Inip-201ENSMUST00000095063 3237 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Vps28Q9D1C8 Slc6a21-201ENSMUST00000085364 1732 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Vps28Q9D1C8 Arhgef9-206ENSMUST00000113884 3784 ntTSL 5 BASIC11.85□□□□□ -0.51
Vps28Q9D1C8 H2afv-202ENSMUST00000109737 1633 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Vps28Q9D1C8 Hist2h4-201ENSMUST00000171473 1630 ntAPPRIS P1 BASIC11.85□□□□□ -0.51
Vps28Q9D1C8 Crybg2-201ENSMUST00000121391 4761 ntAPPRIS P2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Vps28Q9D1C8 Lgi4-201ENSMUST00000039775 4037 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Vps28Q9D1C8 Zcchc11-202ENSMUST00000097925 5865 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
Vps28Q9D1C8 Stra6-202ENSMUST00000085677 2725 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Vps28Q9D1C8 Samd11-201ENSMUST00000179919 2610 ntAPPRIS P2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Vps28Q9D1C8 Gm18986-201ENSMUST00000216029 1986 ntBASIC11.85□□□□□ -0.51
Vps28Q9D1C8 Lingo4-201ENSMUST00000050975 3645 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Vps28Q9D1C8 Rapgef2-206ENSMUST00000195708 6964 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
Vps28Q9D1C8 Pros1-201ENSMUST00000023629 3303 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Vps28Q9D1C8 Btnl7-ps-201ENSMUST00000023469 1763 ntBASIC11.84□□□□□ -0.51
Vps28Q9D1C8 Hbs1l-201ENSMUST00000020153 2793 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Vps28Q9D1C8 Tbcd-201ENSMUST00000103013 3906 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Vps28Q9D1C8 Rnf17-201ENSMUST00000095793 5264 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Vps28Q9D1C8 Rgr-203ENSMUST00000225070 4704 ntBASIC11.84□□□□□ -0.51
Vps28Q9D1C8 Pip4k2b-201ENSMUST00000018691 5053 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Vps28Q9D1C8 Pacsin1-201ENSMUST00000045896 4190 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Vps28Q9D1C8 Cog4-201ENSMUST00000034203 2737 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
Vps28Q9D1C8 March7-202ENSMUST00000102747 2271 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Vps28Q9D1C8 Gm43773-201ENSMUST00000198548 2162 ntBASIC11.84□□□□□ -0.51
Vps28Q9D1C8 Smtn-202ENSMUST00000020721 3335 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Vps28Q9D1C8 Asb3-202ENSMUST00000117883 2509 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Vps28Q9D1C8 Npy5r-202ENSMUST00000211920 1715 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Vps28Q9D1C8 n-R5s64-201ENSMUST00000102019 119 ntBASIC11.84□□□□□ -0.51
Vps28Q9D1C8 Cdc42se1-204ENSMUST00000107201 907 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Vps28Q9D1C8 Gm15352-201ENSMUST00000118696 270 ntBASIC11.84□□□□□ -0.51
Vps28Q9D1C8 Gsto2-202ENSMUST00000120645 1277 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Vps28Q9D1C8 Kcnmb4os1-201ENSMUST00000134586 824 ntTSL 2 BASIC11.84□□□□□ -0.51
Vps28Q9D1C8 Gm22334-201ENSMUST00000158070 133 ntBASIC11.84□□□□□ -0.51
Vps28Q9D1C8 Stx5a-219ENSMUST00000177373 995 ntTSL 5 BASIC11.84□□□□□ -0.51
Vps28Q9D1C8 Ccl19-ps3-201ENSMUST00000179634 324 ntBASIC11.84□□□□□ -0.51
Vps28Q9D1C8 Gm12407-201ENSMUST00000180219 324 ntBASIC11.84□□□□□ -0.51
Vps28Q9D1C8 1700029J03Rik-201ENSMUST00000185803 789 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Vps28Q9D1C8 Stpg4-202ENSMUST00000186211 591 ntAPPRIS ALT2 TSL 2 BASIC11.84□□□□□ -0.51
Vps28Q9D1C8 Nkg7-203ENSMUST00000206741 686 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Vps28Q9D1C8 Gm45441-202ENSMUST00000209301 1235 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Vps28Q9D1C8 2010001M07Rik-201ENSMUST00000214235 364 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Vps28Q9D1C8 AC125486.1-201ENSMUST00000218701 320 ntBASIC11.84□□□□□ -0.51
Vps28Q9D1C8 4930423D24Rik-202ENSMUST00000219785 554 ntTSL 5 BASIC11.84□□□□□ -0.51
Vps28Q9D1C8 AC154680.1-201ENSMUST00000224376 859 ntBASIC11.84□□□□□ -0.51
Vps28Q9D1C8 Gm14267-206ENSMUST00000226870 1209 ntBASIC11.84□□□□□ -0.51
Vps28Q9D1C8 Krtap5-1-201ENSMUST00000084413 588 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Vps28Q9D1C8 Gm10681-202ENSMUST00000178221 1605 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Vps28Q9D1C8 Rpap1-203ENSMUST00000110793 5458 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Vps28Q9D1C8 Pdzrn4-202ENSMUST00000169942 3851 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Vps28Q9D1C8 Grm5-201ENSMUST00000107263 3516 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
Vps28Q9D1C8 Mindy1-202ENSMUST00000107187 2827 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Vps28Q9D1C8 Sstr2-203ENSMUST00000146390 2143 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Vps28Q9D1C8 Sstr3-201ENSMUST00000053239 3928 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Vps28Q9D1C8 Rgs11-201ENSMUST00000025020 2006 ntAPPRIS P2 TSL 2 BASIC11.84□□□□□ -0.51
Vps28Q9D1C8 Clasp1-216ENSMUST00000189738 5373 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
Vps28Q9D1C8 Nelfcd-201ENSMUST00000016397 2280 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Vps28Q9D1C8 Pamr1-201ENSMUST00000028612 2864 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Vps28Q9D1C8 Vezf1-201ENSMUST00000018521 4583 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Vps28Q9D1C8 Gng7-203ENSMUST00000117805 3382 ntAPPRIS ALT1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Vps28Q9D1C8 Dcaf8-202ENSMUST00000191689 2754 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Vps28Q9D1C8 Camta2-205ENSMUST00000119120 4460 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Vps28Q9D1C8 Telo2-202ENSMUST00000115181 3530 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.51
Vps28Q9D1C8 Gm12766-201ENSMUST00000140298 1823 ntTSL 1 (best) BASIC11.83□□□□□ -0.51
Vps28Q9D1C8 Trit1-201ENSMUST00000102649 2074 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.51
Vps28Q9D1C8 3110062M04Rik-201ENSMUST00000055097 3681 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.51
Vps28Q9D1C8 Olfr1344-202ENSMUST00000218906 2590 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Vps28Q9D1C8 Phka2-203ENSMUST00000112377 3947 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
Vps28Q9D1C8 Kcnh6-202ENSMUST00000106903 2816 ntTSL 5 BASIC11.83□□□□□ -0.52
Vps28Q9D1C8 Srsf5-202ENSMUST00000110351 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Vps28Q9D1C8 Evl-204ENSMUST00000172409 1955 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Vps28Q9D1C8 Hnrnpk-202ENSMUST00000116403 2970 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Vps28Q9D1C8 Gm6903-201ENSMUST00000160509 1366 ntBASIC11.83□□□□□ -0.52
Vps28Q9D1C8 Gm21319-201ENSMUST00000164517 1863 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Vps28Q9D1C8 Mast4-207ENSMUST00000167058 10636 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Vps28Q9D1C8 Aldh4a1-201ENSMUST00000039818 3382 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Vps28Q9D1C8 Kifc2-201ENSMUST00000004294 3143 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Vps28Q9D1C8 Nuak2-202ENSMUST00000082125 3107 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
Vps28Q9D1C8 Cacna1s-201ENSMUST00000112064 6251 ntAPPRIS P3 TSL 2 BASIC11.83□□□□□ -0.52
Vps28Q9D1C8 Sh3tc1-201ENSMUST00000070203 4549 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Vps28Q9D1C8 Gabrr1-201ENSMUST00000029947 2286 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 105.8 ms