Protein–RNA interactions for Protein: Q6PDQ2

Chd4, Chromodomain-helicase-DNA-binding protein 4, mousemouse

Known RBP Predictions only

Length 1,915 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd4Q6PDQ2 Foxred1-201ENSMUST00000043805 2232 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Chd4Q6PDQ2 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Chd4Q6PDQ2 Map2k4-201ENSMUST00000046963 3695 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Chd4Q6PDQ2 6030458C11Rik-204ENSMUST00000228177 3156 ntBASIC14.8□□□□□ -0.04
Chd4Q6PDQ2 Rapgef3-203ENSMUST00000126854 4005 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Chd4Q6PDQ2 Gm5739-201ENSMUST00000208601 1703 ntBASIC14.8□□□□□ -0.04
Chd4Q6PDQ2 Gm15519-201ENSMUST00000120088 1566 ntBASIC14.8□□□□□ -0.04
Chd4Q6PDQ2 Mir1893-201ENSMUST00000122565 83 ntBASIC14.8□□□□□ -0.04
Chd4Q6PDQ2 Gm22344-201ENSMUST00000122642 278 ntBASIC14.8□□□□□ -0.04
Chd4Q6PDQ2 Myl3-202ENSMUST00000124267 575 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
Chd4Q6PDQ2 1700021J08Rik-201ENSMUST00000138729 575 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Chd4Q6PDQ2 Mir432-201ENSMUST00000157230 75 ntBASIC14.8□□□□□ -0.04
Chd4Q6PDQ2 Cdhr4-208ENSMUST00000176373 492 ntTSL 5 BASIC14.8□□□□□ -0.04
Chd4Q6PDQ2 Ighv5-8-202ENSMUST00000191967 337 ntBASIC14.8□□□□□ -0.04
Chd4Q6PDQ2 Gm37723-201ENSMUST00000194480 565 ntBASIC14.8□□□□□ -0.04
Chd4Q6PDQ2 Gm45079-201ENSMUST00000205627 461 ntTSL 3 BASIC14.8□□□□□ -0.04
Chd4Q6PDQ2 Mir326-201ENSMUST00000083637 95 ntBASIC14.8□□□□□ -0.04
Chd4Q6PDQ2 Gm10580-201ENSMUST00000097985 396 ntBASIC14.8□□□□□ -0.04
Chd4Q6PDQ2 Gm10582-201ENSMUST00000097987 396 ntBASIC14.8□□□□□ -0.04
Chd4Q6PDQ2 Gm10583-201ENSMUST00000097988 396 ntBASIC14.8□□□□□ -0.04
Chd4Q6PDQ2 Mylip-202ENSMUST00000222178 1954 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Chd4Q6PDQ2 Rfx6-204ENSMUST00000219364 2682 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Chd4Q6PDQ2 Pip4k2c-201ENSMUST00000013970 3307 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Chd4Q6PDQ2 Col2a1-201ENSMUST00000023123 5104 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Chd4Q6PDQ2 Akap3-201ENSMUST00000095440 3153 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Chd4Q6PDQ2 Med12l-203ENSMUST00000040846 3747 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Chd4Q6PDQ2 Anxa11-202ENSMUST00000112364 1625 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Chd4Q6PDQ2 Pde4c-201ENSMUST00000034307 3203 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Chd4Q6PDQ2 Grk4-202ENSMUST00000074651 3234 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Chd4Q6PDQ2 AC167022.1-201ENSMUST00000218647 1458 ntBASIC14.8□□□□□ -0.04
Chd4Q6PDQ2 Rxfp3-201ENSMUST00000058007 4275 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
Chd4Q6PDQ2 Traf3ip3-201ENSMUST00000043550 2122 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Chd4Q6PDQ2 Xkr5-201ENSMUST00000055503 3176 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Chd4Q6PDQ2 Ranbp17-202ENSMUST00000102815 5001 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Chd4Q6PDQ2 Gm39117-201ENSMUST00000207692 1569 ntTSL 5 BASIC14.8□□□□□ -0.04
Chd4Q6PDQ2 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Chd4Q6PDQ2 Lrmp-201ENSMUST00000032396 2319 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Chd4Q6PDQ2 AC113282.5-201ENSMUST00000224330 1679 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
Chd4Q6PDQ2 Kank2-201ENSMUST00000034717 5040 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Chd4Q6PDQ2 Art2b-202ENSMUST00000209526 2819 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
Chd4Q6PDQ2 Aamdc-206ENSMUST00000136757 789 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
Chd4Q6PDQ2 9530085P06Rik-201ENSMUST00000182121 827 ntBASIC14.8□□□□□ -0.04
Chd4Q6PDQ2 Gm27003-201ENSMUST00000182590 497 ntTSL 5 BASIC14.8□□□□□ -0.04
Chd4Q6PDQ2 Zfp655-203ENSMUST00000196069 1150 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Chd4Q6PDQ2 Gm43778-201ENSMUST00000199438 199 ntBASIC14.8□□□□□ -0.04
Chd4Q6PDQ2 Gm42732-201ENSMUST00000202887 1197 ntBASIC14.8□□□□□ -0.04
Chd4Q6PDQ2 Tcl1b5-201ENSMUST00000000717 1055 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Chd4Q6PDQ2 Trim45-204ENSMUST00000134993 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Chd4Q6PDQ2 Ackr2-202ENSMUST00000214340 3015 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Chd4Q6PDQ2 Rab3d-203ENSMUST00000122211 3886 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Chd4Q6PDQ2 Ids-201ENSMUST00000101509 4972 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Chd4Q6PDQ2 Rhbdd2-201ENSMUST00000043707 4207 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Chd4Q6PDQ2 Myocd-202ENSMUST00000102635 4935 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Chd4Q6PDQ2 Ss18l2-206ENSMUST00000215966 2316 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Chd4Q6PDQ2 Zbtb43-203ENSMUST00000113156 1828 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Chd4Q6PDQ2 Gm20758-201ENSMUST00000220339 2171 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Chd4Q6PDQ2 Psapl1-201ENSMUST00000052224 2548 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
Chd4Q6PDQ2 Pram1-201ENSMUST00000052079 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Chd4Q6PDQ2 Adgrl1-210ENSMUST00000152978 5734 ntTSL 5 BASIC14.79□□□□□ -0.04
Chd4Q6PDQ2 Map6-205ENSMUST00000207883 3431 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Chd4Q6PDQ2 Slc39a8-205ENSMUST00000167390 3533 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
Chd4Q6PDQ2 Zfp641-201ENSMUST00000023722 4212 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Chd4Q6PDQ2 Tnfrsf13b-201ENSMUST00000010286 2556 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Chd4Q6PDQ2 Map4-201ENSMUST00000035055 6091 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Chd4Q6PDQ2 Cntd1-201ENSMUST00000103107 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Chd4Q6PDQ2 Gm5122-202ENSMUST00000216854 1637 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Chd4Q6PDQ2 Gm11919-201ENSMUST00000117609 721 ntBASIC14.79□□□□□ -0.04
Chd4Q6PDQ2 Apobr-203ENSMUST00000137646 457 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
Chd4Q6PDQ2 6530401F13Rik-201ENSMUST00000166971 1090 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Chd4Q6PDQ2 Mmp7-201ENSMUST00000018767 1068 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Chd4Q6PDQ2 Prm2-202ENSMUST00000189593 674 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
Chd4Q6PDQ2 Olfr963-201ENSMUST00000073433 936 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
Chd4Q6PDQ2 Olfr538-201ENSMUST00000084457 933 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
Chd4Q6PDQ2 Rad54l-202ENSMUST00000102705 2780 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Chd4Q6PDQ2 Dck-201ENSMUST00000031311 3078 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Chd4Q6PDQ2 2410002F23Rik-206ENSMUST00000107950 3336 ntAPPRIS P2 TSL 2 BASIC14.79□□□□□ -0.04
Chd4Q6PDQ2 Muc3-201ENSMUST00000041226 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Chd4Q6PDQ2 Lgals8-203ENSMUST00000124888 2843 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Chd4Q6PDQ2 Hoxa9-201ENSMUST00000048680 3226 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Chd4Q6PDQ2 Fam107b-202ENSMUST00000115052 861 ntTSL 3 BASIC14.78□□□□□ -0.04
Chd4Q6PDQ2 Gm12745-201ENSMUST00000121767 214 ntBASIC14.78□□□□□ -0.04
Chd4Q6PDQ2 Gm13449-201ENSMUST00000153559 1231 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Chd4Q6PDQ2 Gm26368-201ENSMUST00000157826 118 ntBASIC14.78□□□□□ -0.04
Chd4Q6PDQ2 Gm25998-201ENSMUST00000175397 53 ntBASIC14.78□□□□□ -0.04
Chd4Q6PDQ2 Nme6-214ENSMUST00000200468 865 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
Chd4Q6PDQ2 Gm18010-201ENSMUST00000203553 202 ntBASIC14.78□□□□□ -0.04
Chd4Q6PDQ2 Dnajc27-201ENSMUST00000020986 4698 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Chd4Q6PDQ2 Gm40639-201ENSMUST00000214642 625 ntTSL 5 BASIC14.78□□□□□ -0.04
Chd4Q6PDQ2 Gstz1-203ENSMUST00000220574 971 ntTSL 2 BASIC14.78□□□□□ -0.04
Chd4Q6PDQ2 AC154759.1-201ENSMUST00000224137 1159 ntBASIC14.78□□□□□ -0.04
Chd4Q6PDQ2 Mrpl33-201ENSMUST00000031024 478 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Chd4Q6PDQ2 Serinc4-202ENSMUST00000110613 2240 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Chd4Q6PDQ2 Plscr1-202ENSMUST00000186364 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Chd4Q6PDQ2 Alg12-201ENSMUST00000043087 1793 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Chd4Q6PDQ2 Ttll1-201ENSMUST00000016897 2057 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Chd4Q6PDQ2 Tmem26-201ENSMUST00000080995 5048 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Chd4Q6PDQ2 Kcnn2-201ENSMUST00000066890 3682 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
Chd4Q6PDQ2 Kalrn-211ENSMUST00000114966 3857 ntTSL 5 BASIC14.78□□□□□ -0.04
Chd4Q6PDQ2 Arhgef40-204ENSMUST00000182061 4756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Chd4Q6PDQ2 Rwdd3-204ENSMUST00000106466 1484 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 35.9 ms