Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Abi1-208ENSMUST00000139038 2899 ntAPPRIS ALT1 TSL 5 BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Mirg-201ENSMUST00000181496 1906 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Awat2-202ENSMUST00000147103 1984 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Pnmal2-201ENSMUST00000094807 4147 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Trim46-201ENSMUST00000041022 3122 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Pknox1-206ENSMUST00000176701 4232 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Myom3-201ENSMUST00000105854 5575 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Gtf2a1-202ENSMUST00000063314 2265 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Cds2-201ENSMUST00000089461 8073 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Zfp687-201ENSMUST00000019482 4632 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 C730027H18Rik-201ENSMUST00000218381 2300 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Prss43-201ENSMUST00000077549 2327 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Cic-212ENSMUST00000169266 8221 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Cit-202ENSMUST00000102560 6213 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Tas1r2-202ENSMUST00000166773 2524 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Park7-202ENSMUST00000105673 919 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Tpm1-207ENSMUST00000113687 962 ntTSL 5 BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Gm13665-201ENSMUST00000120830 528 ntBASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Gm12164-201ENSMUST00000121695 551 ntBASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Rpl13-ps1-201ENSMUST00000121801 668 ntBASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Pdlim2-204ENSMUST00000127836 920 ntTSL 5 BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Nbdy-201ENSMUST00000140575 788 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Nbdy-202ENSMUST00000149514 775 ntAPPRIS ALT2 TSL 2 BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Gm22334-201ENSMUST00000158070 133 ntBASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Cmtm1-201ENSMUST00000159039 1130 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Gm17028-201ENSMUST00000170026 704 ntTSL 3 BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Iqcf6-201ENSMUST00000171091 537 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Gm27046-201ENSMUST00000182160 463 ntBASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Gm5597-201ENSMUST00000182353 1193 ntBASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Gm28882-201ENSMUST00000185504 314 ntBASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Gm34767-201ENSMUST00000191813 1062 ntBASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Gm43947-201ENSMUST00000203019 959 ntBASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Mt2-202ENSMUST00000212806 388 ntTSL 2 BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Gm39185-201ENSMUST00000212941 540 ntTSL 5 BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 AC158605.1-202ENSMUST00000217860 540 ntTSL 2 BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Ift43-205ENSMUST00000222821 783 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Treml1-205ENSMUST00000225849 974 ntAPPRIS ALT2 BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Psmb2-201ENSMUST00000030642 859 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 H2-Ob-204ENSMUST00000173764 1319 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Crry-ps-201ENSMUST00000079090 1309 ntBASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Ranbp10-201ENSMUST00000041400 5308 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Pga5-201ENSMUST00000025647 1417 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Numa1-201ENSMUST00000084852 7180 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Bad-201ENSMUST00000025910 1451 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Trim45-201ENSMUST00000037409 4612 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 D630008O14Rik-201ENSMUST00000144260 1568 ntTSL 2 BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Dusp14-201ENSMUST00000018792 1571 ntAPPRIS P1 TSL 2 BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Arhgef2-207ENSMUST00000175903 3356 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Slc2a10-201ENSMUST00000029196 3544 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Wars-204ENSMUST00000161154 1824 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Elavl2-204ENSMUST00000107110 3671 ntAPPRIS ALT1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Spock2-203ENSMUST00000165024 3699 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Pdzd7-203ENSMUST00000169459 3903 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Tsen2-201ENSMUST00000040234 2106 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Gm42141-201ENSMUST00000196534 2172 ntBASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Galntl6-202ENSMUST00000098757 2210 ntTSL 5 BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Gm38115-201ENSMUST00000194317 2413 ntTSL 5 BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Bbip1-201ENSMUST00000135402 2488 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Rxfp2-206ENSMUST00000201612 2470 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Pigm-201ENSMUST00000052455 7554 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
Col28a1Q2UY11 Mrrf-201ENSMUST00000028250 2623 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Col28a1Q2UY11 Sox8-201ENSMUST00000025003 3000 ntAPPRIS P2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Col28a1Q2UY11 Kcnj11-205ENSMUST00000211674 3142 ntAPPRIS P1 BASIC11.22□□□□□ -0.61
Col28a1Q2UY11 Enpp4-201ENSMUST00000024757 4560 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Col28a1Q2UY11 Cad-203ENSMUST00000200953 6489 ntTSL 5 BASIC11.22□□□□□ -0.61
Col28a1Q2UY11 Sun1-203ENSMUST00000100517 1522 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Col28a1Q2UY11 Skap1-202ENSMUST00000100519 1100 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Col28a1Q2UY11 Mpl-202ENSMUST00000102671 2934 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
Col28a1Q2UY11 Mob3b-201ENSMUST00000102975 6030 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Col28a1Q2UY11 6030468B19Rik-201ENSMUST00000106331 1071 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Col28a1Q2UY11 Hyal1-202ENSMUST00000112387 2706 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Col28a1Q2UY11 Glyctk-202ENSMUST00000112543 4081 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Col28a1Q2UY11 Cdk15-201ENSMUST00000114248 1477 ntAPPRIS P2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Col28a1Q2UY11 Gm13875-201ENSMUST00000120162 282 ntBASIC11.22□□□□□ -0.61
Col28a1Q2UY11 Gm15547-201ENSMUST00000122152 333 ntBASIC11.22□□□□□ -0.61
Col28a1Q2UY11 Tex22-201ENSMUST00000012355 1267 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Col28a1Q2UY11 Gm13556-201ENSMUST00000132692 1412 ntTSL 3 BASIC11.22□□□□□ -0.61
Col28a1Q2UY11 Gm14662-201ENSMUST00000145552 734 ntTSL 3 BASIC11.22□□□□□ -0.61
Col28a1Q2UY11 C230066G23Rik-201ENSMUST00000150195 650 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Col28a1Q2UY11 Gm16099-202ENSMUST00000151873 660 ntTSL 5 BASIC11.22□□□□□ -0.61
Col28a1Q2UY11 Gm24514-201ENSMUST00000174961 285 ntBASIC11.22□□□□□ -0.61
Col28a1Q2UY11 Rhoc-204ENSMUST00000176347 583 ntTSL 5 BASIC11.22□□□□□ -0.61
Col28a1Q2UY11 Tnnt1-213ENSMUST00000178163 934 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
Col28a1Q2UY11 Adtrp-204ENSMUST00000179758 1046 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
Col28a1Q2UY11 Ikzf2-202ENSMUST00000187184 2013 ntTSL 5 BASIC11.22□□□□□ -0.61
Col28a1Q2UY11 E230029C05Rik-203ENSMUST00000208028 2066 ntBASIC11.22□□□□□ -0.61
Col28a1Q2UY11 Bet1l-207ENSMUST00000211527 298 ntTSL 5 BASIC11.22□□□□□ -0.61
Col28a1Q2UY11 Gm32468-201ENSMUST00000214199 1040 ntTSL 5 BASIC11.22□□□□□ -0.61
Col28a1Q2UY11 Olfr1495-202ENSMUST00000215930 2025 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.61
Col28a1Q2UY11 Gm19994-201ENSMUST00000217086 586 ntBASIC11.22□□□□□ -0.61
Col28a1Q2UY11 Vmn1r193-202ENSMUST00000227457 6429 ntAPPRIS P1 BASIC11.22□□□□□ -0.61
Col28a1Q2UY11 Tm2d3-201ENSMUST00000032726 908 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Col28a1Q2UY11 Atp6v1g1-201ENSMUST00000035301 1135 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Col28a1Q2UY11 Rpp38-201ENSMUST00000062672 1042 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Col28a1Q2UY11 Aldh3a2-201ENSMUST00000066277 2892 ntTSL 2 BASIC11.22□□□□□ -0.61
Col28a1Q2UY11 Gm9996-201ENSMUST00000070359 913 ntBASIC11.22□□□□□ -0.61
Col28a1Q2UY11 Smtn-203ENSMUST00000075118 3117 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Col28a1Q2UY11 Actg2-201ENSMUST00000075161 1333 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Col28a1Q2UY11 Vmn1r197-201ENSMUST00000091734 897 ntAPPRIS P1 BASIC11.22□□□□□ -0.61
Col28a1Q2UY11 Ptbp1-202ENSMUST00000095457 2598 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 71 ms