Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Acsm4-201ENSMUST00000047045 2152 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Lig3P97386 Actb-201ENSMUST00000100497 1920 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Lig3P97386 Smtn-203ENSMUST00000075118 3117 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Lig3P97386 Sp100-213ENSMUST00000155094 1666 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Lig3P97386 Rnh1-202ENSMUST00000167493 1656 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
Lig3P97386 Rnh1-204ENSMUST00000210314 1658 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Lig3P97386 Rabggtb-202ENSMUST00000167111 1418 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Lig3P97386 Retreg1-206ENSMUST00000228306 1430 ntBASIC12.7□□□□□ -0.38
Lig3P97386 Dcun1d3-202ENSMUST00000098080 3072 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Lig3P97386 Atad2-201ENSMUST00000038194 5684 ntAPPRIS P2 TSL 5 BASIC12.7□□□□□ -0.38
Lig3P97386 Pcdhga4-201ENSMUST00000194418 4727 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Lig3P97386 Sowahc-201ENSMUST00000182161 4482 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
Lig3P97386 Armc3-202ENSMUST00000114640 2818 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
Lig3P97386 Acacb-201ENSMUST00000031583 8482 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Lig3P97386 C2cd5-213ENSMUST00000204655 3526 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Lig3P97386 Gm44260-201ENSMUST00000204946 2094 ntBASIC12.69□□□□□ -0.38
Lig3P97386 Gper1-201ENSMUST00000066211 2537 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lig3P97386 Brat1-202ENSMUST00000100505 3431 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lig3P97386 Miga2-201ENSMUST00000077977 3381 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lig3P97386 Calu-202ENSMUST00000090481 2670 ntAPPRIS ALT1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lig3P97386 Dpep1-201ENSMUST00000019422 2236 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lig3P97386 Col9a1-202ENSMUST00000088349 3059 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Lig3P97386 Cdh15-201ENSMUST00000034443 3251 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lig3P97386 Myo16-201ENSMUST00000042103 6725 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
Lig3P97386 Armc1-201ENSMUST00000029125 3673 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lig3P97386 Fut1-201ENSMUST00000008605 2580 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lig3P97386 4632415L05Rik-202ENSMUST00000198527 4087 ntBASIC12.69□□□□□ -0.38
Lig3P97386 Ankrd42-201ENSMUST00000056106 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lig3P97386 Zfp689-201ENSMUST00000053392 3621 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lig3P97386 Timm10b-204ENSMUST00000106784 494 ntTSL 3 BASIC12.69□□□□□ -0.38
Lig3P97386 Rmdn1-202ENSMUST00000108253 806 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lig3P97386 Gm13809-201ENSMUST00000117921 597 ntBASIC12.69□□□□□ -0.38
Lig3P97386 Rab15-202ENSMUST00000118604 778 ntTSL 3 BASIC12.69□□□□□ -0.38
Lig3P97386 Gm12899-201ENSMUST00000120565 551 ntBASIC12.69□□□□□ -0.38
Lig3P97386 Gm14585-201ENSMUST00000120713 634 ntBASIC12.69□□□□□ -0.38
Lig3P97386 Gm5863-201ENSMUST00000121760 1008 ntBASIC12.69□□□□□ -0.38
Lig3P97386 Dnmt3bos-201ENSMUST00000124988 718 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Lig3P97386 Smim1-206ENSMUST00000132541 490 ntAPPRIS P1 TSL 3 BASIC12.69□□□□□ -0.38
Lig3P97386 Gm12984-201ENSMUST00000145711 273 ntTSL 5 BASIC12.69□□□□□ -0.38
Lig3P97386 Gm15978-201ENSMUST00000161043 738 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Lig3P97386 Gm3332-201ENSMUST00000189337 928 ntBASIC12.69□□□□□ -0.38
Lig3P97386 Gm28516-201ENSMUST00000190257 663 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Lig3P97386 Gm5852-201ENSMUST00000194119 1021 ntBASIC12.69□□□□□ -0.38
Lig3P97386 Gm5542-201ENSMUST00000195485 1089 ntBASIC12.69□□□□□ -0.38
Lig3P97386 Gm43184-201ENSMUST00000197247 542 ntBASIC12.69□□□□□ -0.38
Lig3P97386 Gm45338-204ENSMUST00000210658 1105 ntTSL 5 BASIC12.69□□□□□ -0.38
Lig3P97386 Gm7395-201ENSMUST00000216059 1045 ntBASIC12.69□□□□□ -0.38
Lig3P97386 Gm10371-202ENSMUST00000228010 1081 ntBASIC12.69□□□□□ -0.38
Lig3P97386 Tsen2-201ENSMUST00000040234 2106 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lig3P97386 Mirlet7i-201ENSMUST00000083472 85 ntBASIC12.69□□□□□ -0.38
Lig3P97386 Adamts1-201ENSMUST00000023610 4884 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lig3P97386 Zfp235-201ENSMUST00000056549 3373 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lig3P97386 Henmt1-205ENSMUST00000196533 1491 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Lig3P97386 Izumo1-201ENSMUST00000033100 1493 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lig3P97386 Rpap2-204ENSMUST00000112654 2914 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lig3P97386 Pbrm1-207ENSMUST00000112095 7907 ntTSL 5 BASIC12.69□□□□□ -0.38
Lig3P97386 Mei4-201ENSMUST00000057067 2670 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lig3P97386 Kif19a-201ENSMUST00000084368 3433 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lig3P97386 Abca7-203ENSMUST00000171637 6638 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lig3P97386 Plekhm1-201ENSMUST00000041272 5968 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lig3P97386 Tex9-209ENSMUST00000184125 2794 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lig3P97386 Smarca1-205ENSMUST00000141084 1965 ntTSL 2 BASIC12.69□□□□□ -0.38
Lig3P97386 Lamp5-201ENSMUST00000057503 1955 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lig3P97386 Scoc-202ENSMUST00000167525 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lig3P97386 Gm16958-201ENSMUST00000180603 1765 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Lig3P97386 Cyp4f39-201ENSMUST00000003413 1599 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Lig3P97386 Pnp2-201ENSMUST00000095925 1372 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lig3P97386 Ror2-202ENSMUST00000130235 3730 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lig3P97386 Sp4-201ENSMUST00000026367 5694 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lig3P97386 Vmn1r45-201ENSMUST00000054202 3341 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lig3P97386 Gm13135-201ENSMUST00000117628 3121 ntBASIC12.68□□□□□ -0.38
Lig3P97386 Plekhg4-206ENSMUST00000214056 3654 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Lig3P97386 Adamts13-201ENSMUST00000014996 3474 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Lig3P97386 Zscan10-201ENSMUST00000095595 2698 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lig3P97386 Rab11fip1-203ENSMUST00000209377 3769 ntTSL 5 BASIC12.68□□□□□ -0.38
Lig3P97386 Ncoa6-203ENSMUST00000109670 7101 ntAPPRIS P2 TSL 5 BASIC12.68□□□□□ -0.38
Lig3P97386 Samd11-201ENSMUST00000179919 2610 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lig3P97386 Clic4-201ENSMUST00000037099 4119 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lig3P97386 Svop-201ENSMUST00000058472 3379 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lig3P97386 Acnat2-201ENSMUST00000081541 1664 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lig3P97386 Trim23-203ENSMUST00000069187 3546 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Lig3P97386 Wdr20rt-201ENSMUST00000046331 2228 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lig3P97386 AU019823-201ENSMUST00000131351 3316 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lig3P97386 AU019823-205ENSMUST00000171462 3339 ntAPPRIS P1 TSL 3 BASIC12.68□□□□□ -0.38
Lig3P97386 Rapgef3-203ENSMUST00000126854 4005 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lig3P97386 Pip5k1b-202ENSMUST00000112673 2387 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Lig3P97386 Klhl3-202ENSMUST00000160860 7149 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Lig3P97386 Pcgf2-203ENSMUST00000103149 817 ntTSL 5 BASIC12.68□□□□□ -0.38
Lig3P97386 Bri3-202ENSMUST00000110695 669 ntTSL 2 BASIC12.68□□□□□ -0.38
Lig3P97386 Cdk2ap1-202ENSMUST00000111472 648 ntAPPRIS ALT1 TSL 5 BASIC12.68□□□□□ -0.38
Lig3P97386 Il15ra-204ENSMUST00000114832 468 ntTSL 5 BASIC12.68□□□□□ -0.38
Lig3P97386 Gm13600-201ENSMUST00000117949 744 ntBASIC12.68□□□□□ -0.38
Lig3P97386 Vps25-205ENSMUST00000121331 790 ntTSL 2 BASIC12.68□□□□□ -0.38
Lig3P97386 4930471C06Rik-202ENSMUST00000143070 579 ntTSL 3 BASIC12.68□□□□□ -0.38
Lig3P97386 Gm13391-202ENSMUST00000147685 816 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Lig3P97386 Gm22442-201ENSMUST00000157256 144 ntBASIC12.68□□□□□ -0.38
Lig3P97386 5430405H02Rik-202ENSMUST00000176134 1196 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Lig3P97386 Gm23771-201ENSMUST00000178702 110 ntBASIC12.68□□□□□ -0.38
Lig3P97386 Nat8f7-202ENSMUST00000179613 686 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
Lig3P97386 1700095B10Rik-201ENSMUST00000182349 978 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 58.8 ms