Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Tmem104-201ENSMUST00000061450 4564 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sox1P53783 Gstm3-201ENSMUST00000004136 1311 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sox1P53783 Larp4-202ENSMUST00000100206 6523 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sox1P53783 Pars2-201ENSMUST00000058905 2191 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sox1P53783 Prss36-202ENSMUST00000118755 3028 ntAPPRIS P2 TSL 5 BASIC11.84□□□□□ -0.51
Sox1P53783 Slc38a6-206ENSMUST00000140523 3032 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sox1P53783 Gm11766-201ENSMUST00000143428 3018 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Sox1P53783 Tcf4-204ENSMUST00000114978 2437 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Sox1P53783 Ebf1-202ENSMUST00000101326 3422 ntAPPRIS ALT1 TSL 1 (best) BASIC11.83□□□□□ -0.51
Sox1P53783 Emx2os-201ENSMUST00000136990 5023 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Sox1P53783 Pex2-201ENSMUST00000059021 1749 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sox1P53783 Ip6k1-201ENSMUST00000035214 4559 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sox1P53783 Dysf-216ENSMUST00000204987 6474 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
Sox1P53783 Zfp536-201ENSMUST00000056338 4621 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sox1P53783 Madd-203ENSMUST00000075269 5756 ntAPPRIS ALT2 TSL 2 BASIC11.83□□□□□ -0.52
Sox1P53783 Klc2-204ENSMUST00000116563 3169 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sox1P53783 Klhl26-203ENSMUST00000209415 2919 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Sox1P53783 Gm14829-201ENSMUST00000121499 1138 ntBASIC11.83□□□□□ -0.52
Sox1P53783 Gm17207-201ENSMUST00000168686 645 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Sox1P53783 Gm29593-201ENSMUST00000189827 620 ntTSL 5 BASIC11.83□□□□□ -0.52
Sox1P53783 4930444A19Rik-202ENSMUST00000190007 633 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Sox1P53783 Gm42689-201ENSMUST00000202403 404 ntBASIC11.83□□□□□ -0.52
Sox1P53783 Gm45090-201ENSMUST00000208775 1148 ntBASIC11.83□□□□□ -0.52
Sox1P53783 Sult2b1-207ENSMUST00000210754 1242 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sox1P53783 Gm5996-201ENSMUST00000211110 718 ntBASIC11.83□□□□□ -0.52
Sox1P53783 Gm18001-201ENSMUST00000212023 688 ntBASIC11.83□□□□□ -0.52
Sox1P53783 Fam228a-203ENSMUST00000220978 861 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
Sox1P53783 AC154461.1-201ENSMUST00000224207 1005 ntBASIC11.83□□□□□ -0.52
Sox1P53783 Nnmt-201ENSMUST00000034808 1043 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sox1P53783 Rnf181-202ENSMUST00000069595 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sox1P53783 C030034I22Rik-202ENSMUST00000188481 4231 ntBASIC11.83□□□□□ -0.52
Sox1P53783 Slc35e2-202ENSMUST00000105608 6291 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Sox1P53783 Atp8a1-202ENSMUST00000072971 7154 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Sox1P53783 Gm20149-201ENSMUST00000214691 1667 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Sox1P53783 Pfkfb3-202ENSMUST00000049849 2076 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Sox1P53783 Atp1a2-201ENSMUST00000085913 6227 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sox1P53783 Ap4b1-203ENSMUST00000106823 2741 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Sox1P53783 Slc6a20a-201ENSMUST00000040960 2732 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sox1P53783 Picalm-213ENSMUST00000208742 3361 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sox1P53783 Kifc1-204ENSMUST00000173492 2350 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sox1P53783 Col14a1-202ENSMUST00000110217 6457 ntAPPRIS ALT1 TSL 5 BASIC11.83□□□□□ -0.52
Sox1P53783 Spib-201ENSMUST00000035323 2788 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sox1P53783 Necab1-202ENSMUST00000108273 2135 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sox1P53783 AC121805.2-201ENSMUST00000218808 2538 ntBASIC11.83□□□□□ -0.52
Sox1P53783 Gm42957-201ENSMUST00000137564 3624 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.52
Sox1P53783 Phf13-201ENSMUST00000055688 3205 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox1P53783 Trpv4-202ENSMUST00000112217 2436 ntTSL 5 BASIC11.82□□□□□ -0.52
Sox1P53783 Tjap1-201ENSMUST00000012440 2426 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox1P53783 Ibtk-201ENSMUST00000039213 5650 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox1P53783 Cd34-202ENSMUST00000110815 2554 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Sox1P53783 Pggt1b-201ENSMUST00000025354 2736 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox1P53783 Pfn4-204ENSMUST00000219503 4775 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Sox1P53783 Ankrd61-203ENSMUST00000110718 1774 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox1P53783 Myh6-205ENSMUST00000226297 6008 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Sox1P53783 Itpa-201ENSMUST00000103193 1390 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox1P53783 Msh6-201ENSMUST00000005503 4254 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox1P53783 Cacna2d1-209ENSMUST00000199704 3861 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Sox1P53783 Arl14ep-201ENSMUST00000028536 3337 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox1P53783 Lgals12-202ENSMUST00000099729 2757 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox1P53783 E230020A03Rik-201ENSMUST00000194646 2386 ntBASIC11.82□□□□□ -0.52
Sox1P53783 Snph-202ENSMUST00000094456 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox1P53783 Neu2-204ENSMUST00000165109 1824 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox1P53783 Zfp809-206ENSMUST00000215902 1800 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Sox1P53783 Dhx37-201ENSMUST00000169485 4760 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox1P53783 Kdm5b-201ENSMUST00000047714 8714 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox1P53783 Net1-201ENSMUST00000091853 2680 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox1P53783 Pdzk1ip1-202ENSMUST00000106548 887 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox1P53783 Pfn1-202ENSMUST00000108549 608 ntTSL 2 BASIC11.82□□□□□ -0.52
Sox1P53783 Rpl35a-205ENSMUST00000115079 510 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
Sox1P53783 Gm15610-201ENSMUST00000120584 195 ntBASIC11.82□□□□□ -0.52
Sox1P53783 Gm15549-201ENSMUST00000121595 622 ntBASIC11.82□□□□□ -0.52
Sox1P53783 Gm6471-202ENSMUST00000148734 587 ntTSL 2 BASIC11.82□□□□□ -0.52
Sox1P53783 Gm20493-201ENSMUST00000173706 213 ntBASIC11.82□□□□□ -0.52
Sox1P53783 Vmn2r-ps9-201ENSMUST00000177446 1099 ntBASIC11.82□□□□□ -0.52
Sox1P53783 Gm27168-201ENSMUST00000183394 361 ntTSL 3 BASIC11.82□□□□□ -0.52
Sox1P53783 Krtap6-3-202ENSMUST00000185581 520 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Sox1P53783 A830092H15Rik-202ENSMUST00000195446 649 ntTSL 3 BASIC11.82□□□□□ -0.52
Sox1P53783 Wbp1-209ENSMUST00000205023 716 ntBASIC11.82□□□□□ -0.52
Sox1P53783 AC158986.2-201ENSMUST00000227487 618 ntBASIC11.82□□□□□ -0.52
Sox1P53783 1500015O10Rik-201ENSMUST00000027217 902 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox1P53783 Fthl17a-201ENSMUST00000048382 835 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox1P53783 Krtap6-3-201ENSMUST00000079151 444 ntBASIC11.82□□□□□ -0.52
Sox1P53783 Gm10228-201ENSMUST00000089105 532 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Sox1P53783 Gm5507-201ENSMUST00000091897 1008 ntBASIC11.82□□□□□ -0.52
Sox1P53783 Lrrc8c-201ENSMUST00000067924 6976 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox1P53783 Xpo1-201ENSMUST00000020538 5145 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Sox1P53783 Hsf2-204ENSMUST00000220042 2430 ntTSL 5 BASIC11.82□□□□□ -0.52
Sox1P53783 Msi2-203ENSMUST00000107909 6436 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox1P53783 Gm39117-201ENSMUST00000207692 1569 ntTSL 5 BASIC11.82□□□□□ -0.52
Sox1P53783 Plcd3-201ENSMUST00000103077 3023 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox1P53783 Arhgef2-229ENSMUST00000177303 3000 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Sox1P53783 Arhgap30-201ENSMUST00000056449 4494 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox1P53783 Rab11a-208ENSMUST00000172298 2336 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox1P53783 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox1P53783 Islr-202ENSMUST00000168864 2076 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox1P53783 Mphosph10-201ENSMUST00000032735 2248 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox1P53783 Samd5-201ENSMUST00000100070 6818 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox1P53783 Six4-202ENSMUST00000175693 6817 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Sox1P53783 Nr2c2-202ENSMUST00000113463 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox1P53783 Esr2-201ENSMUST00000076634 3288 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 51.3 ms