Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Uap1l1-201ENSMUST00000102925 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Cux1P53564 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Cux1P53564 Taf1b-201ENSMUST00000075954 2209 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Cux1P53564 Zufsp-201ENSMUST00000048222 2991 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Cux1P53564 Atp2a3-204ENSMUST00000108486 4540 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Cux1P53564 A230077H06Rik-202ENSMUST00000189574 2477 ntTSL 2 BASIC17.5■□□□□ 0.39
Cux1P53564 Pou2af1-201ENSMUST00000034554 2548 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Cux1P53564 Polrmt-201ENSMUST00000020580 3755 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Cux1P53564 Cog1-201ENSMUST00000018805 3935 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Cux1P53564 Gatb-203ENSMUST00000107674 1980 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Cux1P53564 Cdip1-202ENSMUST00000117713 1964 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Cux1P53564 Mrpl3-201ENSMUST00000035177 3972 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Cux1P53564 Gm43172-201ENSMUST00000202139 2137 ntBASIC17.49■□□□□ 0.39
Cux1P53564 Ahdc1-202ENSMUST00000105914 5898 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
Cux1P53564 Nifk-202ENSMUST00000112688 849 ntTSL 5 BASIC17.49■□□□□ 0.39
Cux1P53564 Vmn2r-ps54-203ENSMUST00000150856 1142 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Cux1P53564 Rpl15-ps5-201ENSMUST00000205636 605 ntBASIC17.49■□□□□ 0.39
Cux1P53564 Gm7192-201ENSMUST00000210793 1137 ntBASIC17.49■□□□□ 0.39
Cux1P53564 Acyp1-201ENSMUST00000008966 648 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Cux1P53564 Gm13871-202ENSMUST00000107319 1324 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Cux1P53564 Gm11757-202ENSMUST00000107321 1324 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Cux1P53564 Steap3-202ENSMUST00000112640 2752 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Cux1P53564 Gripap1-202ENSMUST00000101694 2867 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Cux1P53564 Cwc25-202ENSMUST00000107579 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Cux1P53564 Cnga4-202ENSMUST00000210344 1977 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Cux1P53564 Prps1-201ENSMUST00000033809 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Cux1P53564 5930430L01Rik-201ENSMUST00000145042 3994 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Cux1P53564 Tbc1d24-209ENSMUST00000201301 4261 ntTSL 5 BASIC17.49■□□□□ 0.39
Cux1P53564 Alpi-201ENSMUST00000113270 2337 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Cux1P53564 C1qtnf6-201ENSMUST00000023075 2402 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Cux1P53564 Slc27a2-201ENSMUST00000061491 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Cux1P53564 Hnrnpk-202ENSMUST00000116403 2970 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Cux1P53564 Xpot-201ENSMUST00000039810 5992 ntTSL 5 BASIC17.49■□□□□ 0.39
Cux1P53564 Ighv13-1-201ENSMUST00000103480 294 ntBASIC17.48■□□□□ 0.39
Cux1P53564 2300003K06Rik-201ENSMUST00000105054 1265 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
Cux1P53564 Tex13c1-201ENSMUST00000105113 2074 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
Cux1P53564 Nfkb2-202ENSMUST00000111881 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Cux1P53564 Gm14592-201ENSMUST00000117201 560 ntBASIC17.48■□□□□ 0.39
Cux1P53564 Gnai3-201ENSMUST00000000001 3262 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Cux1P53564 Gm6758-201ENSMUST00000119643 1055 ntBASIC17.48■□□□□ 0.39
Cux1P53564 Gm13827-201ENSMUST00000148801 372 ntBASIC17.48■□□□□ 0.39
Cux1P53564 Mocs2-201ENSMUST00000015680 1152 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Cux1P53564 Atp6v1e1-201ENSMUST00000019354 1312 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Cux1P53564 Gm42751-201ENSMUST00000198065 559 ntBASIC17.48■□□□□ 0.39
Cux1P53564 Gm39117-201ENSMUST00000207692 1569 ntTSL 5 BASIC17.48■□□□□ 0.39
Cux1P53564 Tpi-rs4-201ENSMUST00000213734 720 ntBASIC17.48■□□□□ 0.39
Cux1P53564 Moxd2-201ENSMUST00000031937 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Cux1P53564 Thtpa-201ENSMUST00000050575 2830 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Cux1P53564 4930402K13Rik-201ENSMUST00000059967 1781 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
Cux1P53564 Entpd4-201ENSMUST00000064831 1842 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
Cux1P53564 Srp19-201ENSMUST00000072576 876 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Cux1P53564 Plxnb1-201ENSMUST00000072093 8649 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Cux1P53564 Actn1-201ENSMUST00000021554 3734 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Cux1P53564 Ildr1-201ENSMUST00000023617 3042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Cux1P53564 Mmel1-207ENSMUST00000163732 2935 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Cux1P53564 Cbx7-203ENSMUST00000109616 2899 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Cux1P53564 Cd34-202ENSMUST00000110815 2554 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Cux1P53564 Sorbs3-202ENSMUST00000227259 2481 ntAPPRIS ALT2 BASIC17.48■□□□□ 0.39
Cux1P53564 Fam49b-201ENSMUST00000063838 3797 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Cux1P53564 Sesn2-201ENSMUST00000030724 3475 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Cux1P53564 Scn4b-201ENSMUST00000060125 4982 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Cux1P53564 4930579F01Rik-202ENSMUST00000199293 1598 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Cux1P53564 Rasgrp4-214ENSMUST00000205027 2717 ntTSL 5 BASIC17.47■□□□□ 0.39
Cux1P53564 Papss1-205ENSMUST00000199878 2648 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Cux1P53564 Gm14055-201ENSMUST00000130262 668 ntTSL 5 BASIC17.47■□□□□ 0.39
Cux1P53564 Gm25872-201ENSMUST00000177784 100 ntBASIC17.47■□□□□ 0.39
Cux1P53564 9530085P06Rik-201ENSMUST00000182121 827 ntBASIC17.47■□□□□ 0.39
Cux1P53564 Gm43752-201ENSMUST00000198475 697 ntBASIC17.47■□□□□ 0.39
Cux1P53564 Cdk5-203ENSMUST00000198990 783 ntTSL 5 BASIC17.47■□□□□ 0.39
Cux1P53564 Rps3a2-201ENSMUST00000074245 792 ntBASIC17.47■□□□□ 0.39
Cux1P53564 Rps3a3-201ENSMUST00000074680 795 ntBASIC17.47■□□□□ 0.39
Cux1P53564 Glb1l-201ENSMUST00000113623 2339 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Cux1P53564 Syvn1-204ENSMUST00000138532 3464 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Cux1P53564 Anp32e-204ENSMUST00000168106 2890 ntTSL 5 BASIC17.47■□□□□ 0.39
Cux1P53564 Plin2-201ENSMUST00000000466 1888 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Cux1P53564 Kdelc1-201ENSMUST00000027213 1765 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Cux1P53564 Ubap1-201ENSMUST00000072866 3456 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Cux1P53564 Eif2s1-201ENSMUST00000071230 3405 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Cux1P53564 Pdhx-201ENSMUST00000011058 2506 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Cux1P53564 Abcd1-202ENSMUST00000114461 2323 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Cux1P53564 Apol9a-202ENSMUST00000089452 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Cux1P53564 Gm20658-201ENSMUST00000175871 1489 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Cux1P53564 1810019N24Rik-201ENSMUST00000181128 1474 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Cux1P53564 Gm42815-201ENSMUST00000198787 1470 ntBASIC17.47■□□□□ 0.39
Cux1P53564 Cdrt4os1-201ENSMUST00000130177 2090 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Cux1P53564 Myo9b-203ENSMUST00000170242 7297 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
Cux1P53564 Fam107b-202ENSMUST00000115052 861 ntTSL 3 BASIC17.47■□□□□ 0.39
Cux1P53564 Gm12418-201ENSMUST00000118116 942 ntBASIC17.47■□□□□ 0.39
Cux1P53564 Gm11981-201ENSMUST00000139769 664 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Cux1P53564 4930402C01Rik-201ENSMUST00000192586 663 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Cux1P53564 Gm7880-201ENSMUST00000203748 871 ntBASIC17.47■□□□□ 0.39
Cux1P53564 1700086D15Rik-201ENSMUST00000020855 1092 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Cux1P53564 Lamc1-201ENSMUST00000027752 7622 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Cux1P53564 Dmtn-201ENSMUST00000022694 5418 ntAPPRIS ALT1 TSL 5 BASIC17.46■□□□□ 0.39
Cux1P53564 Ap1s2-203ENSMUST00000112294 3199 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Cux1P53564 Dmtn-208ENSMUST00000228009 2643 ntAPPRIS P2 BASIC17.46■□□□□ 0.39
Cux1P53564 Ppara-201ENSMUST00000057979 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Cux1P53564 Tubb1-201ENSMUST00000016399 1406 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Cux1P53564 Eif4g1-205ENSMUST00000115461 5507 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
Cux1P53564 C77080-202ENSMUST00000097873 5033 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 42.9 ms