Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Als2-204ENSMUST00000163058 5379 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Rfx3P48381 Stkld1-201ENSMUST00000055406 2169 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Rfx3P48381 Strada-202ENSMUST00000103072 1517 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
Rfx3P48381 Gm38089-201ENSMUST00000193585 1514 ntBASIC10.43□□□□□ -0.74
Rfx3P48381 Nme8-202ENSMUST00000091763 2122 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Rfx3P48381 Herc4-201ENSMUST00000020258 3898 ntAPPRIS P2 TSL 1 (best) BASIC10.43□□□□□ -0.74
Rfx3P48381 Ccdc162-212ENSMUST00000219054 3182 ntTSL 5 BASIC10.43□□□□□ -0.74
Rfx3P48381 Srgap3-202ENSMUST00000088373 8887 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Rfx3P48381 Cd72-204ENSMUST00000107925 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC10.43□□□□□ -0.74
Rfx3P48381 Axl-201ENSMUST00000002677 4265 ntAPPRIS P3 TSL 1 (best) BASIC10.43□□□□□ -0.74
Rfx3P48381 Camk2g-203ENSMUST00000100837 3564 ntAPPRIS ALT1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Rfx3P48381 Inpp4a-203ENSMUST00000114933 3004 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
Rfx3P48381 F10-201ENSMUST00000033821 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC10.43□□□□□ -0.74
Rfx3P48381 Zfp384-202ENSMUST00000054553 2451 ntTSL 5 BASIC10.43□□□□□ -0.74
Rfx3P48381 Smc4-202ENSMUST00000107803 3983 ntTSL 5 BASIC10.43□□□□□ -0.74
Rfx3P48381 Gm8146-201ENSMUST00000192106 1847 ntBASIC10.43□□□□□ -0.74
Rfx3P48381 Svop-201ENSMUST00000058472 3379 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Rfx3P48381 Asb7-202ENSMUST00000124899 4928 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Rfx3P48381 Pcgf2-206ENSMUST00000169807 2347 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Rfx3P48381 Vasn-201ENSMUST00000038770 2829 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Rfx3P48381 Mir877-201ENSMUST00000104738 85 ntBASIC10.43□□□□□ -0.74
Rfx3P48381 Pom121l12-201ENSMUST00000117584 1039 ntAPPRIS P1 BASIC10.43□□□□□ -0.74
Rfx3P48381 Gm11700-201ENSMUST00000119409 403 ntBASIC10.43□□□□□ -0.74
Rfx3P48381 Gm13665-201ENSMUST00000120830 528 ntBASIC10.43□□□□□ -0.74
Rfx3P48381 Gm26636-201ENSMUST00000181696 1115 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
Rfx3P48381 AA914427-201ENSMUST00000193194 1166 ntBASIC10.43□□□□□ -0.74
Rfx3P48381 Gm35409-201ENSMUST00000196412 1102 ntTSL 5 BASIC10.43□□□□□ -0.74
Rfx3P48381 Gm4959-201ENSMUST00000197271 1044 ntBASIC10.43□□□□□ -0.74
Rfx3P48381 Dmrt1i-203ENSMUST00000197311 718 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
Rfx3P48381 Gm44967-201ENSMUST00000207047 631 ntBASIC10.43□□□□□ -0.74
Rfx3P48381 Gm44992-206ENSMUST00000209313 1261 ntTSL 5 BASIC10.43□□□□□ -0.74
Rfx3P48381 Gm2553-201ENSMUST00000215986 605 ntBASIC10.43□□□□□ -0.74
Rfx3P48381 H2-M10.2-201ENSMUST00000023845 1113 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Rfx3P48381 Odf4-201ENSMUST00000038932 1078 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Rfx3P48381 Cbx1-202ENSMUST00000079702 912 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
Rfx3P48381 Lhfpl5-201ENSMUST00000080780 1248 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Rfx3P48381 Mtus2-202ENSMUST00000085554 1009 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
Rfx3P48381 Gm21939-201ENSMUST00000221137 2773 ntBASIC10.43□□□□□ -0.74
Rfx3P48381 Brd1-202ENSMUST00000109380 3259 ntAPPRIS P1 TSL 5 BASIC10.43□□□□□ -0.74
Rfx3P48381 Ccdc15-206ENSMUST00000217238 1747 ntAPPRIS ALT2 TSL 1 (best) BASIC10.43□□□□□ -0.74
Rfx3P48381 Kalrn-206ENSMUST00000114954 4677 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
Rfx3P48381 Srp54b-202ENSMUST00000218879 3642 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Rfx3P48381 Synj2-203ENSMUST00000115784 2634 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
Rfx3P48381 Pitpnb-204ENSMUST00000200298 2632 ntAPPRIS ALT1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Rfx3P48381 Ptbp1-202ENSMUST00000095457 2598 ntAPPRIS ALT2 TSL 1 (best) BASIC10.43□□□□□ -0.74
Rfx3P48381 Tob2-201ENSMUST00000050467 3994 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Rfx3P48381 Sox8-201ENSMUST00000025003 3000 ntAPPRIS P2 TSL 1 (best) BASIC10.43□□□□□ -0.74
Rfx3P48381 Rnf220-201ENSMUST00000030439 3029 ntAPPRIS P3 TSL 1 (best) BASIC10.43□□□□□ -0.74
Rfx3P48381 Edil3-202ENSMUST00000081769 5317 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Rfx3P48381 Cyb5r3-202ENSMUST00000162178 2547 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
Rfx3P48381 Prdx2-202ENSMUST00000109733 1590 ntAPPRIS P1 TSL 2 BASIC10.43□□□□□ -0.74
Rfx3P48381 Dzip1l-202ENSMUST00000112884 3791 ntAPPRIS ALT2 TSL 5 BASIC10.43□□□□□ -0.74
Rfx3P48381 Ddx56-201ENSMUST00000004507 1956 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Rfx3P48381 Wdcp-202ENSMUST00000085793 1992 ntAPPRIS ALT2 TSL 2 BASIC10.43□□□□□ -0.74
Rfx3P48381 Tex45-203ENSMUST00000161680 1526 ntAPPRIS P1 TSL 5 BASIC10.43□□□□□ -0.74
Rfx3P48381 Gtf3c1-204ENSMUST00000205659 6570 ntAPPRIS ALT2 TSL 5 BASIC10.42□□□□□ -0.74
Rfx3P48381 Ppp1r18-201ENSMUST00000113814 3131 ntAPPRIS P2 TSL 1 (best) BASIC10.42□□□□□ -0.74
Rfx3P48381 2700068H02Rik-201ENSMUST00000137882 1872 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
Rfx3P48381 Gm12200-201ENSMUST00000144876 1858 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
Rfx3P48381 Map4-206ENSMUST00000169851 3446 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
Rfx3P48381 Ehbp1-202ENSMUST00000109563 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC10.42□□□□□ -0.74
Rfx3P48381 Acox3-203ENSMUST00000114237 2956 ntAPPRIS P2 TSL 1 (best) BASIC10.42□□□□□ -0.74
Rfx3P48381 Susd4-201ENSMUST00000085724 2983 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Rfx3P48381 Rnf13-210ENSMUST00000200497 2573 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
Rfx3P48381 Cfap52-201ENSMUST00000021287 2199 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Rfx3P48381 Nr5a2-205ENSMUST00000192929 1756 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
Rfx3P48381 Larp7-201ENSMUST00000029588 2121 ntAPPRIS P1 TSL 5 BASIC10.42□□□□□ -0.74
Rfx3P48381 Slc12a7-201ENSMUST00000017900 5142 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Rfx3P48381 Jade1-201ENSMUST00000026865 5481 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
Rfx3P48381 Ufd1-202ENSMUST00000115578 2078 ntAPPRIS P1 TSL 5 BASIC10.42□□□□□ -0.74
Rfx3P48381 Ppip5k1-205ENSMUST00000110628 5404 ntAPPRIS ALT2 TSL 5 BASIC10.42□□□□□ -0.74
Rfx3P48381 Mfsd4a-204ENSMUST00000126927 2422 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
Rfx3P48381 Luc7l-201ENSMUST00000025023 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC10.42□□□□□ -0.74
Rfx3P48381 Rgs12-203ENSMUST00000114280 2777 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
Rfx3P48381 Col4a3-201ENSMUST00000113457 8554 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Rfx3P48381 Gm22133-201ENSMUST00000102082 109 ntBASIC10.42□□□□□ -0.74
Rfx3P48381 Trav13d-4-201ENSMUST00000103607 264 ntAPPRIS P1 BASIC10.42□□□□□ -0.74
Rfx3P48381 Gm22323-201ENSMUST00000103832 109 ntBASIC10.42□□□□□ -0.74
Rfx3P48381 Gm26286-201ENSMUST00000104166 134 ntBASIC10.42□□□□□ -0.74
Rfx3P48381 Gm13388-201ENSMUST00000126659 425 ntTSL 3 BASIC10.42□□□□□ -0.74
Rfx3P48381 Pdlim2-205ENSMUST00000129174 729 ntTSL 2 BASIC10.42□□□□□ -0.74
Rfx3P48381 Gm17077-201ENSMUST00000133179 279 ntTSL 5 BASIC10.42□□□□□ -0.74
Rfx3P48381 Psma1-203ENSMUST00000135570 960 ntTSL 3 BASIC10.42□□□□□ -0.74
Rfx3P48381 E130006D01Rik-203ENSMUST00000137398 906 ntTSL 2 BASIC10.42□□□□□ -0.74
Rfx3P48381 4930483J18Rik-202ENSMUST00000138715 1093 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
Rfx3P48381 Gm26361-201ENSMUST00000158868 186 ntBASIC10.42□□□□□ -0.74
Rfx3P48381 Gm17344-201ENSMUST00000171173 1159 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
Rfx3P48381 Gm9034-201ENSMUST00000182071 1005 ntBASIC10.42□□□□□ -0.74
Rfx3P48381 Nr1h2-ps-201ENSMUST00000183844 478 ntBASIC10.42□□□□□ -0.74
Rfx3P48381 Trav13-4-dv7-202ENSMUST00000184905 264 ntAPPRIS P1 BASIC10.42□□□□□ -0.74
Rfx3P48381 Gm5441-202ENSMUST00000190132 449 ntTSL 2 BASIC10.42□□□□□ -0.74
Rfx3P48381 Ighv4-2-201ENSMUST00000192975 362 ntBASIC10.42□□□□□ -0.74
Rfx3P48381 Gm37388-201ENSMUST00000193984 429 ntAPPRIS P1 TSL 5 BASIC10.42□□□□□ -0.74
Rfx3P48381 Gm33104-201ENSMUST00000214178 1010 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
Rfx3P48381 Gm807-202ENSMUST00000224929 408 ntBASIC10.42□□□□□ -0.74
Rfx3P48381 Psma1-201ENSMUST00000033008 1201 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Rfx3P48381 Olfr398-201ENSMUST00000053874 945 ntAPPRIS P1 BASIC10.42□□□□□ -0.74
Rfx3P48381 Lce3d-201ENSMUST00000059053 491 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Rfx3P48381 Cldn17-201ENSMUST00000069549 1172 ntAPPRIS P1 BASIC10.42□□□□□ -0.74
Rfx3P48381 Ifi27-205ENSMUST00000085065 977 ntAPPRIS ALT2 TSL 1 (best) BASIC10.42□□□□□ -0.74
Retrieved 100 of 76,532 protein–RNA pairs in 27.9 ms