Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Retnla-201ENSMUST00000023329 598 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Cdx2P43241 Banf2-201ENSMUST00000037722 571 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Cdx2P43241 1600002K03Rik-201ENSMUST00000041882 678 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Cdx2P43241 Uqcc3-201ENSMUST00000096253 829 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Cdx2P43241 Atp6v0a1-210ENSMUST00000168757 3967 ntAPPRIS ALT1 TSL 5 BASIC10.97□□□□□ -0.65
Cdx2P43241 Gm14820-201ENSMUST00000126286 1449 ntTSL 3 BASIC10.97□□□□□ -0.65
Cdx2P43241 Evi2a-201ENSMUST00000103236 1463 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Cdx2P43241 Serpinb12-202ENSMUST00000112724 1623 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Cdx2P43241 Snx6-201ENSMUST00000005798 1928 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Cdx2P43241 AC165351.1-201ENSMUST00000219078 2020 ntBASIC10.97□□□□□ -0.65
Cdx2P43241 Dlc1-201ENSMUST00000033923 6159 ntAPPRIS P3 TSL 1 (best) BASIC10.97□□□□□ -0.65
Cdx2P43241 Tmc4-201ENSMUST00000038743 2310 ntAPPRIS P2 TSL 1 (best) BASIC10.97□□□□□ -0.65
Cdx2P43241 Abi1-204ENSMUST00000114544 2790 ntAPPRIS ALT1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Cdx2P43241 Tm9sf2-201ENSMUST00000026624 3107 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Cdx2P43241 Cog6-201ENSMUST00000036665 3182 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Cdx2P43241 Hps3-201ENSMUST00000012580 4016 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Cdx2P43241 Jph2-202ENSMUST00000109425 4155 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Cdx2P43241 Rac1-201ENSMUST00000080537 4159 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Cdx2P43241 Zbtb1-201ENSMUST00000042779 12190 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Cdx2P43241 Dnpep-203ENSMUST00000185419 2833 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
Cdx2P43241 Tgm1-201ENSMUST00000002389 2791 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Cdx2P43241 Ppp2r2b-202ENSMUST00000117687 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Cdx2P43241 Lcp2-202ENSMUST00000109329 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC10.96□□□□□ -0.65
Cdx2P43241 Bpgm-201ENSMUST00000045372 2220 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Cdx2P43241 Dysf-216ENSMUST00000204987 6474 ntAPPRIS ALT2 TSL 5 BASIC10.96□□□□□ -0.65
Cdx2P43241 Chrnb2-201ENSMUST00000029562 6399 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Cdx2P43241 Slc29a1-213ENSMUST00000167692 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC10.96□□□□□ -0.65
Cdx2P43241 Rims1-206ENSMUST00000115273 6107 ntAPPRIS ALT2 TSL 5 BASIC10.96□□□□□ -0.65
Cdx2P43241 Fscn3-201ENSMUST00000031719 1902 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Cdx2P43241 AC138329.2-201ENSMUST00000225579 1842 ntBASIC10.96□□□□□ -0.65
Cdx2P43241 Olfr223-202ENSMUST00000215626 1695 ntAPPRIS P1 TSL 5 BASIC10.96□□□□□ -0.65
Cdx2P43241 Chrne-201ENSMUST00000014753 1616 ntAPPRIS ALT2 TSL 5 BASIC10.96□□□□□ -0.65
Cdx2P43241 Plekha6-203ENSMUST00000186917 4820 ntAPPRIS P2 TSL 1 (best) BASIC10.96□□□□□ -0.65
Cdx2P43241 Hsd17b6-203ENSMUST00000219447 1459 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Cdx2P43241 Gm5434-202ENSMUST00000222384 1451 ntBASIC10.96□□□□□ -0.65
Cdx2P43241 Gm5434-201ENSMUST00000071825 1451 ntBASIC10.96□□□□□ -0.65
Cdx2P43241 5830437K03Rik-201ENSMUST00000199219 1379 ntBASIC10.96□□□□□ -0.65
Cdx2P43241 Mcm9-204ENSMUST00000219838 4132 ntTSL 5 BASIC10.96□□□□□ -0.65
Cdx2P43241 Akr1b8-201ENSMUST00000038406 1358 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Cdx2P43241 Pemt-202ENSMUST00000102692 1003 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Cdx2P43241 Cdk5rap1-202ENSMUST00000109730 1227 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
Cdx2P43241 Fmr1nb-203ENSMUST00000114647 679 ntAPPRIS ALT2 TSL 1 (best) BASIC10.96□□□□□ -0.65
Cdx2P43241 Gm11996-201ENSMUST00000117538 915 ntBASIC10.96□□□□□ -0.65
Cdx2P43241 Gm11700-201ENSMUST00000119409 403 ntBASIC10.96□□□□□ -0.65
Cdx2P43241 Saxo2-202ENSMUST00000126478 430 ntAPPRIS ALT2 TSL 1 (best) BASIC10.96□□□□□ -0.65
Cdx2P43241 Gm24992-201ENSMUST00000157412 130 ntBASIC10.96□□□□□ -0.65
Cdx2P43241 Gm16167-201ENSMUST00000160428 1065 ntBASIC10.96□□□□□ -0.65
Cdx2P43241 Fxyd5-209ENSMUST00000162087 762 ntAPPRIS P3 TSL 3 BASIC10.96□□□□□ -0.65
Cdx2P43241 Gm9507-202ENSMUST00000180157 654 ntBASIC10.96□□□□□ -0.65
Cdx2P43241 1700008K24Rik-201ENSMUST00000185974 833 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
Cdx2P43241 Gm9916-201ENSMUST00000192943 1228 ntBASIC10.96□□□□□ -0.65
Cdx2P43241 Gm29763-201ENSMUST00000205306 616 ntBASIC10.96□□□□□ -0.65
Cdx2P43241 AI463170-202ENSMUST00000218453 558 ntTSL 2 BASIC10.96□□□□□ -0.65
Cdx2P43241 BC106175-202ENSMUST00000219344 1213 ntBASIC10.96□□□□□ -0.65
Cdx2P43241 Nme6-201ENSMUST00000035053 1074 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Cdx2P43241 Cox17-201ENSMUST00000050273 444 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Cdx2P43241 Gm8181-201ENSMUST00000062242 669 ntBASIC10.96□□□□□ -0.65
Cdx2P43241 Spink2-201ENSMUST00000065216 631 ntAPPRIS P3 TSL 1 (best) BASIC10.96□□□□□ -0.65
Cdx2P43241 Srp19-201ENSMUST00000072576 876 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Cdx2P43241 Myl9-201ENSMUST00000088552 1128 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Cdx2P43241 Cbfa2t2-202ENSMUST00000099178 3247 ntTSL 1 (best) BASIC10.96□□□□□ -0.66
Cdx2P43241 Frmpd1-202ENSMUST00000107804 5241 ntAPPRIS P1 TSL 5 BASIC10.96□□□□□ -0.66
Cdx2P43241 Phykpl-206ENSMUST00000167797 3116 ntAPPRIS P2 TSL 1 (best) BASIC10.96□□□□□ -0.66
Cdx2P43241 Gdap2-201ENSMUST00000029459 3008 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
Cdx2P43241 Bcas3-201ENSMUST00000074875 2814 ntAPPRIS P3 TSL 5 BASIC10.96□□□□□ -0.66
Cdx2P43241 Msh6-201ENSMUST00000005503 4254 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
Cdx2P43241 Zfp94-201ENSMUST00000032673 2529 ntAPPRIS P3 TSL 1 (best) BASIC10.96□□□□□ -0.66
Cdx2P43241 Dtx1-201ENSMUST00000031607 4035 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
Cdx2P43241 Mcf2l-203ENSMUST00000110866 5108 ntTSL 1 (best) BASIC10.96□□□□□ -0.66
Cdx2P43241 Epha5-202ENSMUST00000113398 4830 ntTSL 5 BASIC10.96□□□□□ -0.66
Cdx2P43241 Ces1d-201ENSMUST00000034172 2004 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
Cdx2P43241 Gm15082-201ENSMUST00000147045 1960 ntTSL 1 (best) BASIC10.96□□□□□ -0.66
Cdx2P43241 Trim9-209ENSMUST00000222316 3049 ntTSL 2 BASIC10.95□□□□□ -0.66
Cdx2P43241 Afg3l1-201ENSMUST00000001520 4227 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx2P43241 Brsk2-216ENSMUST00000174499 4223 ntAPPRIS ALT2 TSL 5 BASIC10.95□□□□□ -0.66
Cdx2P43241 Rtn4ip1-201ENSMUST00000054418 2981 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx2P43241 Dgcr14-201ENSMUST00000003621 2819 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx2P43241 Sparcl1-201ENSMUST00000031249 2759 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx2P43241 Sh3pxd2a-202ENSMUST00000111800 10380 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx2P43241 Ccndbp1-202ENSMUST00000099488 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx2P43241 Zbtb7b-202ENSMUST00000107432 3639 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx2P43241 Palb2-204ENSMUST00000106469 2559 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx2P43241 Zfp639-201ENSMUST00000029203 1458 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx2P43241 Dlgap4-203ENSMUST00000099145 3402 ntAPPRIS P4 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx2P43241 G630016G05Rik-202ENSMUST00000156095 3398 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx2P43241 AC108858.2-201ENSMUST00000228186 1425 ntBASIC10.95□□□□□ -0.66
Cdx2P43241 Mbnl2-208ENSMUST00000227594 2334 ntAPPRIS P1 BASIC10.95□□□□□ -0.66
Cdx2P43241 Duox2-201ENSMUST00000053734 5744 ntAPPRIS P1 TSL 2 BASIC10.95□□□□□ -0.66
Cdx2P43241 Osbp2-203ENSMUST00000102950 3077 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx2P43241 Nhlrc2-201ENSMUST00000071423 3934 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx2P43241 Vamp1-203ENSMUST00000100942 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx2P43241 Mir671-201ENSMUST00000102432 98 ntBASIC10.95□□□□□ -0.66
Cdx2P43241 Cisd3-203ENSMUST00000107585 586 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx2P43241 Gm8302-201ENSMUST00000119217 852 ntBASIC10.95□□□□□ -0.66
Cdx2P43241 Gm12705-201ENSMUST00000129460 872 ntTSL 2 BASIC10.95□□□□□ -0.66
Cdx2P43241 Gm14342-201ENSMUST00000137629 2119 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx2P43241 Bloc1s1-205ENSMUST00000153731 613 ntTSL 5 BASIC10.95□□□□□ -0.66
Cdx2P43241 Prdx2-208ENSMUST00000164807 1175 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Cdx2P43241 Gm3250-201ENSMUST00000167358 693 ntAPPRIS P1 BASIC10.95□□□□□ -0.66
Cdx2P43241 Cnfn-202ENSMUST00000167591 698 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
Retrieved 100 of 76,532 protein–RNA pairs in 43.8 ms