Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Rgs3-205ENSMUST00000107424 4084 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Gm10851-201ENSMUST00000192087 1685 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Siglec1-202ENSMUST00000110226 1861 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Rad51ap1-202ENSMUST00000112221 1871 ntAPPRIS P3 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Gm42913-201ENSMUST00000197936 1853 ntBASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Gm42463-201ENSMUST00000198041 4886 ntBASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Slc29a1-213ENSMUST00000167692 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Gm16364-201ENSMUST00000153722 1313 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Olfr1349-204ENSMUST00000207820 1325 ntAPPRIS P1 TSL 3 BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Mirt1-203ENSMUST00000181539 2259 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Ldb3-204ENSMUST00000064098 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Dclk1-204ENSMUST00000196745 7962 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Cd207-201ENSMUST00000037882 1522 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Gm3830-201ENSMUST00000185540 1715 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Cmklr1-201ENSMUST00000047936 2882 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Trim25-201ENSMUST00000000284 5566 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Tor3a-201ENSMUST00000079625 3285 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Corin-202ENSMUST00000167460 4639 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Rtbdn-204ENSMUST00000152378 2322 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Emilin1-201ENSMUST00000031055 3852 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Prkcg-201ENSMUST00000100301 3127 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Cdc40Q9DC48 Prrt3-204ENSMUST00000205075 1956 ntAPPRIS ALT2 TSL 2 BASIC10.77□□□□□ -0.68
Cdc40Q9DC48 Odf2-208ENSMUST00000113763 2364 ntAPPRIS P3 TSL 5 BASIC10.77□□□□□ -0.68
Cdc40Q9DC48 Clcnkb-201ENSMUST00000006378 2370 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
Cdc40Q9DC48 Irak2-201ENSMUST00000059286 3196 ntAPPRIS P3 TSL 1 (best) BASIC10.77□□□□□ -0.68
Cdc40Q9DC48 Zfp46-201ENSMUST00000069195 4639 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
Cdc40Q9DC48 AC154639.1-201ENSMUST00000224393 2849 ntBASIC10.77□□□□□ -0.68
Cdc40Q9DC48 Umod-201ENSMUST00000033263 2625 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
Cdc40Q9DC48 5930412G12Rik-201ENSMUST00000091324 2403 ntTSL 5 BASIC10.77□□□□□ -0.68
Cdc40Q9DC48 Fank1-201ENSMUST00000065359 2004 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
Cdc40Q9DC48 Chtop-201ENSMUST00000001043 3257 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
Cdc40Q9DC48 Slc26a2-202ENSMUST00000146409 7814 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Cdc40Q9DC48 AC164426.2-201ENSMUST00000225993 2492 ntBASIC10.77□□□□□ -0.69
Cdc40Q9DC48 Mthfd1l-201ENSMUST00000043735 3535 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Cdc40Q9DC48 Nin-201ENSMUST00000021468 6708 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.69
Cdc40Q9DC48 Matn2-202ENSMUST00000163455 3577 ntAPPRIS ALT2 TSL 5 BASIC10.77□□□□□ -0.69
Cdc40Q9DC48 Zfp467-204ENSMUST00000114559 3163 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Cdc40Q9DC48 Taf6l-202ENSMUST00000010249 848 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Cdc40Q9DC48 Nrg4-204ENSMUST00000130158 1000 ntAPPRIS P1 TSL 5 BASIC10.77□□□□□ -0.69
Cdc40Q9DC48 1700003G13Rik-202ENSMUST00000131342 705 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Cdc40Q9DC48 Gm11831-201ENSMUST00000141538 629 ntTSL 3 BASIC10.77□□□□□ -0.69
Cdc40Q9DC48 Gm12714-201ENSMUST00000143391 669 ntTSL 3 BASIC10.77□□□□□ -0.69
Cdc40Q9DC48 1700001G11Rik-203ENSMUST00000153646 764 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Cdc40Q9DC48 Gm17231-202ENSMUST00000165858 663 ntTSL 5 BASIC10.77□□□□□ -0.69
Cdc40Q9DC48 1110038B12Rik-208ENSMUST00000174714 520 ntTSL 2 BASIC10.77□□□□□ -0.69
Cdc40Q9DC48 3110045C21Rik-201ENSMUST00000180638 1135 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Cdc40Q9DC48 Gm8343-201ENSMUST00000182705 994 ntBASIC10.77□□□□□ -0.69
Cdc40Q9DC48 Gm27530-201ENSMUST00000184096 98 ntBASIC10.77□□□□□ -0.69
Cdc40Q9DC48 Gm37835-201ENSMUST00000193305 361 ntBASIC10.77□□□□□ -0.69
Cdc40Q9DC48 Lgals4-207ENSMUST00000208971 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.69
Cdc40Q9DC48 Tepp-207ENSMUST00000212056 613 ntAPPRIS ALT2 TSL 5 BASIC10.77□□□□□ -0.69
Cdc40Q9DC48 Gm45909-201ENSMUST00000212413 1031 ntBASIC10.77□□□□□ -0.69
Cdc40Q9DC48 Gm32352-201ENSMUST00000212465 688 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Cdc40Q9DC48 Neil1-201ENSMUST00000034842 1170 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Cdc40Q9DC48 Pou2f1-209ENSMUST00000160908 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.69
Cdc40Q9DC48 Rnf6-201ENSMUST00000067837 2388 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Cdc40Q9DC48 Nrde2-201ENSMUST00000021596 3718 ntAPPRIS P1 TSL 5 BASIC10.77□□□□□ -0.69
Cdc40Q9DC48 Osgin1-201ENSMUST00000098365 1959 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Cdc40Q9DC48 Cdc25a-204ENSMUST00000198308 2880 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Cdc40Q9DC48 Exoc3l4-209ENSMUST00000222897 2665 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Cdc40Q9DC48 Zfp426-202ENSMUST00000115562 3557 ntAPPRIS P3 TSL 1 (best) BASIC10.77□□□□□ -0.69
Cdc40Q9DC48 Utp23-203ENSMUST00000137116 2921 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Cdc40Q9DC48 Fam206a-201ENSMUST00000045368 4275 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Cdc40Q9DC48 Lingo4-201ENSMUST00000050975 3645 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Cdc40Q9DC48 Add2-208ENSMUST00000203786 2289 ntAPPRIS P3 TSL 1 (best) BASIC10.77□□□□□ -0.69
Cdc40Q9DC48 Bmp1-201ENSMUST00000022693 3684 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Cdc40Q9DC48 Tmem41b-202ENSMUST00000118429 2774 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Cdc40Q9DC48 Rgs6-211ENSMUST00000191107 1621 ntTSL 5 BASIC10.76□□□□□ -0.69
Cdc40Q9DC48 Gpr173-201ENSMUST00000070316 4855 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Cdc40Q9DC48 Pabpc4-202ENSMUST00000080178 3019 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Cdc40Q9DC48 Cd72-205ENSMUST00000107926 1419 ntAPPRIS P3 TSL 1 (best) BASIC10.76□□□□□ -0.69
Cdc40Q9DC48 Rasgef1b-203ENSMUST00000146396 3339 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Cdc40Q9DC48 Cd72-203ENSMUST00000098105 1420 ntAPPRIS ALT2 TSL 1 (best) BASIC10.76□□□□□ -0.69
Cdc40Q9DC48 Cyp2a12-201ENSMUST00000075552 1681 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Cdc40Q9DC48 Rab14-202ENSMUST00000113025 4346 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Cdc40Q9DC48 Bpi-201ENSMUST00000065039 1926 ntAPPRIS P2 TSL 1 (best) BASIC10.76□□□□□ -0.69
Cdc40Q9DC48 Lck-201ENSMUST00000067240 2185 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Cdc40Q9DC48 Cacna1e-207ENSMUST00000211821 6765 ntAPPRIS ALT2 TSL 5 BASIC10.76□□□□□ -0.69
Cdc40Q9DC48 Ltbp1-202ENSMUST00000112514 4870 ntAPPRIS ALT1 TSL 5 BASIC10.76□□□□□ -0.69
Cdc40Q9DC48 Pdgfra-202ENSMUST00000168162 6834 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Cdc40Q9DC48 Zscan29-201ENSMUST00000079024 2465 ntTSL 5 BASIC10.76□□□□□ -0.69
Cdc40Q9DC48 Sec14l4-201ENSMUST00000019512 2956 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Cdc40Q9DC48 Cars-201ENSMUST00000010899 3222 ntAPPRIS P3 TSL 1 (best) BASIC10.76□□□□□ -0.69
Cdc40Q9DC48 Slit2-202ENSMUST00000170109 7758 ntAPPRIS ALT2 TSL 5 BASIC10.76□□□□□ -0.69
Cdc40Q9DC48 Slit2-217ENSMUST00000174421 7785 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Cdc40Q9DC48 March7-202ENSMUST00000102747 2271 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Cdc40Q9DC48 Gdap2-202ENSMUST00000106997 2014 ntTSL 2 BASIC10.76□□□□□ -0.69
Cdc40Q9DC48 Strada-202ENSMUST00000103072 1517 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Cdc40Q9DC48 Ighv2-6-8-201ENSMUST00000103455 342 ntAPPRIS ALT2 BASIC10.76□□□□□ -0.69
Cdc40Q9DC48 Ppil6-201ENSMUST00000105507 1068 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Cdc40Q9DC48 Ttc4-202ENSMUST00000106772 935 ntAPPRIS ALT2 TSL 5 BASIC10.76□□□□□ -0.69
Cdc40Q9DC48 Wdr45-206ENSMUST00000116634 1250 ntAPPRIS ALT2 TSL 5 BASIC10.76□□□□□ -0.69
Cdc40Q9DC48 Gm11663-201ENSMUST00000117888 290 ntBASIC10.76□□□□□ -0.69
Cdc40Q9DC48 Gm13888-201ENSMUST00000119148 422 ntBASIC10.76□□□□□ -0.69
Cdc40Q9DC48 Gm13205-201ENSMUST00000123548 562 ntTSL 3 BASIC10.76□□□□□ -0.69
Cdc40Q9DC48 D630008O14Rik-202ENSMUST00000149909 1043 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Cdc40Q9DC48 Tspo2-205ENSMUST00000162481 473 ntTSL 5 BASIC10.76□□□□□ -0.69
Cdc40Q9DC48 Gm17231-203ENSMUST00000170133 637 ntTSL 3 BASIC10.76□□□□□ -0.69
Cdc40Q9DC48 Fam166b-206ENSMUST00000171134 1198 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Cdc40Q9DC48 9030616G12Rik-201ENSMUST00000181142 644 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Retrieved 100 of 76,532 protein–RNA pairs in 50.1 ms