Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Serpinb12-202ENSMUST00000112724 1623 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Clp1Q99LI9 Col14a1-203ENSMUST00000110221 5679 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Clp1Q99LI9 Klc2-204ENSMUST00000116563 3169 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Clp1Q99LI9 B4galt4-201ENSMUST00000023482 2304 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Clp1Q99LI9 Shc1-203ENSMUST00000107417 3079 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Clp1Q99LI9 Dbn1-201ENSMUST00000021950 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Clp1Q99LI9 Dgcr8-202ENSMUST00000115633 4522 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Clp1Q99LI9 Myo15b-208ENSMUST00000222123 5154 ntTSL 5 BASIC12.22□□□□□ -0.45
Clp1Q99LI9 4930558J22Rik-201ENSMUST00000139822 1480 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Clp1Q99LI9 Mterf3-201ENSMUST00000021991 1479 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Clp1Q99LI9 Herc3-201ENSMUST00000031823 3596 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Clp1Q99LI9 Hars2-206ENSMUST00000152954 3336 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Clp1Q99LI9 Clpb-201ENSMUST00000001884 4627 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Clp1Q99LI9 Tspan1-201ENSMUST00000030465 1985 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Clp1Q99LI9 Slc24a5-201ENSMUST00000070353 1954 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Clp1Q99LI9 Nyap1-202ENSMUST00000118326 4565 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Clp1Q99LI9 Fam217b-201ENSMUST00000094251 4541 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Clp1Q99LI9 Grid2ip-203ENSMUST00000120825 3865 ntTSL 5 BASIC12.22□□□□□ -0.45
Clp1Q99LI9 Ablim1-211ENSMUST00000111555 2562 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Clp1Q99LI9 Rpl35a-205ENSMUST00000115079 510 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
Clp1Q99LI9 Gm14071-201ENSMUST00000117817 509 ntBASIC12.22□□□□□ -0.45
Clp1Q99LI9 Gm13981-201ENSMUST00000122360 447 ntBASIC12.22□□□□□ -0.45
Clp1Q99LI9 Gm14222-201ENSMUST00000128681 575 ntTSL 2 BASIC12.22□□□□□ -0.45
Clp1Q99LI9 Gm15911-201ENSMUST00000138992 809 ntTSL 3 BASIC12.22□□□□□ -0.45
Clp1Q99LI9 E130307A14Rik-204ENSMUST00000139356 701 ntTSL 3 BASIC12.22□□□□□ -0.45
Clp1Q99LI9 Gm24992-201ENSMUST00000157412 130 ntBASIC12.22□□□□□ -0.45
Clp1Q99LI9 Gm25677-201ENSMUST00000174983 72 ntBASIC12.22□□□□□ -0.45
Clp1Q99LI9 H2-Bl-203ENSMUST00000183999 358 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Clp1Q99LI9 1700017I07Rik-201ENSMUST00000184823 462 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Clp1Q99LI9 1700008K24Rik-201ENSMUST00000185974 833 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Clp1Q99LI9 4833421G17Rik-201ENSMUST00000191704 844 ntBASIC12.22□□□□□ -0.45
Clp1Q99LI9 Gm34379-201ENSMUST00000195036 290 ntBASIC12.22□□□□□ -0.45
Clp1Q99LI9 Gm9369-201ENSMUST00000196009 733 ntBASIC12.22□□□□□ -0.45
Clp1Q99LI9 4930477O15Rik-201ENSMUST00000196484 1089 ntBASIC12.22□□□□□ -0.45
Clp1Q99LI9 Gm30946-201ENSMUST00000198288 724 ntBASIC12.22□□□□□ -0.45
Clp1Q99LI9 Gm43458-201ENSMUST00000200791 462 ntTSL 3 BASIC12.22□□□□□ -0.45
Clp1Q99LI9 Gm42599-201ENSMUST00000201308 469 ntBASIC12.22□□□□□ -0.45
Clp1Q99LI9 AC170997.1-201ENSMUST00000214554 1053 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Clp1Q99LI9 CT030166.5-201ENSMUST00000222249 420 ntBASIC12.22□□□□□ -0.45
Clp1Q99LI9 Ermard-203ENSMUST00000097393 2535 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Clp1Q99LI9 Wdr81-204ENSMUST00000173320 6908 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Clp1Q99LI9 Slc39a9-208ENSMUST00000219706 5427 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Clp1Q99LI9 Slitrk3-201ENSMUST00000059407 3587 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Clp1Q99LI9 Fbf1-201ENSMUST00000103031 5252 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Clp1Q99LI9 Eif5-202ENSMUST00000166123 4050 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Clp1Q99LI9 Poc1a-201ENSMUST00000072206 2337 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Clp1Q99LI9 Ung-203ENSMUST00000112275 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Clp1Q99LI9 4930484H19Rik-201ENSMUST00000218870 1737 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Clp1Q99LI9 Gpat3-201ENSMUST00000031255 2884 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Clp1Q99LI9 Tbkbp1-204ENSMUST00000107615 3333 ntAPPRIS P2 TSL 5 BASIC12.22□□□□□ -0.45
Clp1Q99LI9 Epha5-202ENSMUST00000113398 4830 ntTSL 5 BASIC12.22□□□□□ -0.45
Clp1Q99LI9 Msi2-203ENSMUST00000107909 6436 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Clp1Q99LI9 Mei4-201ENSMUST00000057067 2670 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Clp1Q99LI9 Fyttd1-211ENSMUST00000171325 4295 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Clp1Q99LI9 Man1a2-201ENSMUST00000008907 7969 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Clp1Q99LI9 Satb2-202ENSMUST00000114415 5805 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Clp1Q99LI9 Samd13-202ENSMUST00000125965 1590 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Clp1Q99LI9 Plek2-201ENSMUST00000021544 1583 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Clp1Q99LI9 Ccndbp1-202ENSMUST00000099488 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Clp1Q99LI9 Pprc1-201ENSMUST00000062322 5205 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Clp1Q99LI9 Samd4-202ENSMUST00000100672 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Clp1Q99LI9 Dync1i2-208ENSMUST00000112144 2565 ntAPPRIS ALT1 TSL 5 BASIC12.22□□□□□ -0.45
Clp1Q99LI9 Drg1-201ENSMUST00000020741 1546 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Clp1Q99LI9 Gm19680-201ENSMUST00000095050 1513 ntBASIC12.21□□□□□ -0.45
Clp1Q99LI9 Gpcpd1-204ENSMUST00000110136 3546 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Clp1Q99LI9 Cavin1-201ENSMUST00000060792 3491 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Clp1Q99LI9 Map3k4-201ENSMUST00000089058 5305 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Clp1Q99LI9 Snx6-201ENSMUST00000005798 1928 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Clp1Q99LI9 Arih1-202ENSMUST00000165322 1431 ntTSL 5 BASIC12.21□□□□□ -0.45
Clp1Q99LI9 Cln3-201ENSMUST00000032962 2386 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Clp1Q99LI9 Zc3hc1-202ENSMUST00000102992 1865 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Clp1Q99LI9 5830437K03Rik-201ENSMUST00000199219 1379 ntBASIC12.21□□□□□ -0.45
Clp1Q99LI9 Plxnb2-201ENSMUST00000060808 6394 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
Clp1Q99LI9 Ntrk2-208ENSMUST00000225583 2719 ntBASIC12.21□□□□□ -0.45
Clp1Q99LI9 Gm11685-201ENSMUST00000141559 1332 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Clp1Q99LI9 Usp24-204ENSMUST00000165709 10594 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
Clp1Q99LI9 Tyk2-206ENSMUST00000216874 4828 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Clp1Q99LI9 1500002C15Rik-201ENSMUST00000178987 2183 ntBASIC12.21□□□□□ -0.45
Clp1Q99LI9 4933425D22Rik-201ENSMUST00000201035 1721 ntBASIC12.21□□□□□ -0.45
Clp1Q99LI9 Trpm1-210ENSMUST00000205731 2575 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Clp1Q99LI9 Ap3m2-201ENSMUST00000163739 3417 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Clp1Q99LI9 Zbtb16-201ENSMUST00000093852 5114 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Clp1Q99LI9 Rmdn1-202ENSMUST00000108253 806 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Clp1Q99LI9 Gm6158-201ENSMUST00000109467 904 ntBASIC12.21□□□□□ -0.45
Clp1Q99LI9 Cat-202ENSMUST00000111168 779 ntTSL 3 BASIC12.21□□□□□ -0.45
Clp1Q99LI9 Gm14539-201ENSMUST00000117527 174 ntBASIC12.21□□□□□ -0.45
Clp1Q99LI9 Gm8111-201ENSMUST00000117659 987 ntBASIC12.21□□□□□ -0.45
Clp1Q99LI9 Apoc3-202ENSMUST00000118649 453 ntAPPRIS P1 TSL 2 BASIC12.21□□□□□ -0.45
Clp1Q99LI9 Nnmt-202ENSMUST00000119426 912 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Clp1Q99LI9 Gm26647-201ENSMUST00000180816 1255 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Clp1Q99LI9 Gm26976-201ENSMUST00000182929 908 ntBASIC12.21□□□□□ -0.45
Clp1Q99LI9 Gm44323-201ENSMUST00000198689 129 ntBASIC12.21□□□□□ -0.45
Clp1Q99LI9 Gm45135-201ENSMUST00000206787 1184 ntBASIC12.21□□□□□ -0.45
Clp1Q99LI9 Gm34908-201ENSMUST00000207222 569 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Clp1Q99LI9 Cysrt1-201ENSMUST00000043379 873 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Clp1Q99LI9 Gm26226-201ENSMUST00000082509 116 ntBASIC12.21□□□□□ -0.45
Clp1Q99LI9 Gm39377-201ENSMUST00000214587 2533 ntTSL 5 BASIC12.21□□□□□ -0.45
Clp1Q99LI9 Runx1-201ENSMUST00000023673 5861 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Clp1Q99LI9 Ddr1-204ENSMUST00000119825 3769 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
Clp1Q99LI9 Sltm-206ENSMUST00000216816 3755 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 30.4 ms