Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Epb41l1-206ENSMUST00000109577 6251 ntTSL 5 BASIC11.3□□□□□ -0.6
Ubfd1Q78JW9 Gm38569-201ENSMUST00000205476 2228 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Ubfd1Q78JW9 Arntl2-202ENSMUST00000111636 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Ubfd1Q78JW9 Mdh1b-201ENSMUST00000114094 1719 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Ubfd1Q78JW9 Nmrk1-203ENSMUST00000159572 1706 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Ubfd1Q78JW9 Neu2-207ENSMUST00000172222 1715 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Ubfd1Q78JW9 AC156031.2-201ENSMUST00000213107 3310 ntBASIC11.29□□□□□ -0.6
Ubfd1Q78JW9 Rab19-201ENSMUST00000031986 1575 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Ubfd1Q78JW9 St6galnac4-204ENSMUST00000179989 2826 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Ubfd1Q78JW9 G630016G05Rik-202ENSMUST00000156095 3398 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Ubfd1Q78JW9 Rsrc1-206ENSMUST00000162036 1406 ntAPPRIS P2 TSL 5 BASIC11.29□□□□□ -0.6
Ubfd1Q78JW9 Cdk13-207ENSMUST00000223490 12548 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Ubfd1Q78JW9 Gm15774-201ENSMUST00000141810 2176 ntTSL 5 BASIC11.29□□□□□ -0.6
Ubfd1Q78JW9 Rtn4-202ENSMUST00000078830 3615 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Ubfd1Q78JW9 Gm4294-201ENSMUST00000105169 614 ntBASIC11.29□□□□□ -0.6
Ubfd1Q78JW9 Tatdn3-203ENSMUST00000110891 1214 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Ubfd1Q78JW9 Tatdn3-204ENSMUST00000110893 1242 ntAPPRIS P2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Ubfd1Q78JW9 Gm14071-201ENSMUST00000117817 509 ntBASIC11.29□□□□□ -0.6
Ubfd1Q78JW9 Gm15856-201ENSMUST00000124853 1162 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Ubfd1Q78JW9 Gm16195-201ENSMUST00000130607 442 ntTSL 2 BASIC11.29□□□□□ -0.6
Ubfd1Q78JW9 Adap2os-201ENSMUST00000140556 984 ntTSL 5 BASIC11.29□□□□□ -0.6
Ubfd1Q78JW9 Agtpbp1-216ENSMUST00000168821 721 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Ubfd1Q78JW9 Tmem40-206ENSMUST00000170625 843 ntAPPRIS ALT2 TSL 3 BASIC11.29□□□□□ -0.6
Ubfd1Q78JW9 AC134328.1-201ENSMUST00000222693 667 ntTSL 2 BASIC11.29□□□□□ -0.6
Ubfd1Q78JW9 CT030170.2-201ENSMUST00000223267 126 ntBASIC11.29□□□□□ -0.6
Ubfd1Q78JW9 Cmbl-201ENSMUST00000070918 1155 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Ubfd1Q78JW9 Mirlet7i-201ENSMUST00000083472 85 ntBASIC11.29□□□□□ -0.6
Ubfd1Q78JW9 Gm23105-201ENSMUST00000083719 134 ntBASIC11.29□□□□□ -0.6
Ubfd1Q78JW9 Zfp335-201ENSMUST00000041361 4587 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Ubfd1Q78JW9 Camsap3-205ENSMUST00000207432 3865 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Ubfd1Q78JW9 4931406C07Rik-203ENSMUST00000180339 2756 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Ubfd1Q78JW9 Dnmt1-201ENSMUST00000004202 5367 ntAPPRIS P4 TSL 1 (best) BASIC11.29□□□□□ -0.6
Ubfd1Q78JW9 Ino80c-203ENSMUST00000141489 2207 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Ubfd1Q78JW9 Wdr89-201ENSMUST00000062370 2979 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Ubfd1Q78JW9 AC122018.1-201ENSMUST00000217769 1686 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Ubfd1Q78JW9 Ints1-210ENSMUST00000200393 7070 ntAPPRIS P2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Ubfd1Q78JW9 Syt7-202ENSMUST00000076968 6624 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Ubfd1Q78JW9 Nelfcd-201ENSMUST00000016397 2280 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Ubfd1Q78JW9 Atl3-202ENSMUST00000170373 6474 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
Ubfd1Q78JW9 Epm2aip1-202ENSMUST00000135807 4245 ntAPPRIS P1 TSL 2 BASIC11.29□□□□□ -0.6
Ubfd1Q78JW9 Slc22a5-201ENSMUST00000019044 3062 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Ubfd1Q78JW9 Bbs1-201ENSMUST00000053506 5581 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Ubfd1Q78JW9 Gm4409-201ENSMUST00000130734 1919 ntTSL 2 BASIC11.29□□□□□ -0.6
Ubfd1Q78JW9 Prr18-202ENSMUST00000163887 3251 ntAPPRIS P1 TSL 3 BASIC11.29□□□□□ -0.6
Ubfd1Q78JW9 Alg12-204ENSMUST00000162183 2130 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Ubfd1Q78JW9 Gm7104-201ENSMUST00000179741 2532 ntBASIC11.29□□□□□ -0.6
Ubfd1Q78JW9 Uap1l1-201ENSMUST00000102925 3349 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Ubfd1Q78JW9 Map7d2-202ENSMUST00000112470 1350 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 Zfp593-201ENSMUST00000030644 1994 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 Acsl6-202ENSMUST00000064690 1988 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 Sema6d-207ENSMUST00000103240 4372 ntAPPRIS ALT1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 Myo16-203ENSMUST00000207477 7169 ntAPPRIS P2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 Lmbr1-202ENSMUST00000179191 4836 ntTSL 5 BASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 Dmbt1-202ENSMUST00000208311 6272 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 Rgs11-201ENSMUST00000025020 2006 ntAPPRIS P2 TSL 2 BASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 Kalrn-211ENSMUST00000114966 3857 ntTSL 5 BASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 Ildr1-203ENSMUST00000119464 2878 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 Asph-207ENSMUST00000108333 2652 ntTSL 5 BASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 Rufy2-203ENSMUST00000122231 2664 ntTSL 5 BASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 Fancc-214ENSMUST00000161977 3111 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 Spata33-202ENSMUST00000212161 2941 ntTSL 2 BASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 Fnip1-201ENSMUST00000046835 6255 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 Gm21358-201ENSMUST00000191645 1659 ntBASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 Dpysl5-201ENSMUST00000088081 5022 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 Hdac5-204ENSMUST00000107152 3788 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 Zfyve1-203ENSMUST00000221919 4420 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 Gm26013-201ENSMUST00000104404 119 ntBASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 Rps9-203ENSMUST00000108624 478 ntTSL 5 BASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 Rps9-204ENSMUST00000108625 914 ntAPPRIS P1 TSL 2 BASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 Gm16219-201ENSMUST00000120096 274 ntBASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 Gm13182-201ENSMUST00000122241 312 ntBASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 2810408I11Rik-201ENSMUST00000122813 435 ntTSL 2 BASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 Mrpl20-202ENSMUST00000130188 442 ntTSL 3 BASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 Cideb-201ENSMUST00000001497 1212 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 Gm5778-201ENSMUST00000171003 1072 ntBASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 Gm20495-201ENSMUST00000173902 235 ntBASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 Gm18159-201ENSMUST00000174516 1070 ntBASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 Satb2-205ENSMUST00000177424 4694 ntTSL 5 BASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 Gm28215-201ENSMUST00000186146 346 ntTSL 5 BASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 Gm28345-201ENSMUST00000188769 1139 ntTSL 5 BASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 Gm28970-201ENSMUST00000191098 1139 ntTSL 5 BASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 Gm42518-201ENSMUST00000196277 938 ntBASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 1700003I16Rik-201ENSMUST00000205198 1058 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 Gm7600-201ENSMUST00000209657 785 ntBASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 Cbx3-ps8-201ENSMUST00000214564 548 ntBASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 Gm18856-203ENSMUST00000222015 483 ntTSL 2 BASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 Mrps34-201ENSMUST00000043907 918 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 Krtap19-5-201ENSMUST00000053460 483 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 Lhfpl5-201ENSMUST00000080780 1248 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 Ints6-202ENSMUST00000223585 10883 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 Plpbp-201ENSMUST00000033875 3603 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 Grk4-202ENSMUST00000074651 3234 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 6820426E19Rik-201ENSMUST00000204274 1970 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 Rbms3-201ENSMUST00000044901 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 Ccdc42os-201ENSMUST00000148019 1335 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 Mmp19-203ENSMUST00000219404 2236 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 Gcc1-202ENSMUST00000090511 4650 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 Mccc1os-202ENSMUST00000137198 2686 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 Birc3-201ENSMUST00000013949 2667 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Ubfd1Q78JW9 Trim25-203ENSMUST00000107896 5590 ntAPPRIS P2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 114.6 ms