Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Ikzf1-204ENSMUST00000076700 5163 ntAPPRIS P2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Sox9Q04887 Gm18263-201ENSMUST00000220846 1928 ntBASIC11.99□□□□□ -0.49
Sox9Q04887 Spon1-201ENSMUST00000046687 6161 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Sox9Q04887 Slc12a8-206ENSMUST00000122427 2070 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Sox9Q04887 Gm6189-201ENSMUST00000164487 2082 ntBASIC11.99□□□□□ -0.49
Sox9Q04887 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Sox9Q04887 3200001D21Rik-201ENSMUST00000221603 2283 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Sox9Q04887 Sdc4-201ENSMUST00000017153 2458 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Sox9Q04887 Hnrnpr-201ENSMUST00000084219 2647 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Sox9Q04887 Ddx19b-202ENSMUST00000065784 3104 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Sox9Q04887 Syvn1-204ENSMUST00000138532 3464 ntAPPRIS P2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Sox9Q04887 Grm5-201ENSMUST00000107263 3516 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
Sox9Q04887 Hacd2-201ENSMUST00000061156 3603 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Sox9Q04887 Usp10-210ENSMUST00000144458 3726 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
Sox9Q04887 Chrna3-201ENSMUST00000034851 4358 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Sox9Q04887 Kif5a-201ENSMUST00000099172 6295 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sox9Q04887 Bcl2l2-201ENSMUST00000022806 3509 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sox9Q04887 Slc25a25-201ENSMUST00000028160 3294 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Sox9Q04887 Mpv17l-201ENSMUST00000023360 3087 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sox9Q04887 Ralgps2-209ENSMUST00000189316 2924 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Sox9Q04887 Eef1akmt3-201ENSMUST00000116231 2719 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
Sox9Q04887 Zfp961-202ENSMUST00000131237 2689 ntAPPRIS ALT2 TSL 3 BASIC11.98□□□□□ -0.49
Sox9Q04887 Otud7b-201ENSMUST00000035519 8043 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sox9Q04887 AC125108.1-201ENSMUST00000218986 2330 ntBASIC11.98□□□□□ -0.49
Sox9Q04887 Hnrnpf-209ENSMUST00000180020 2280 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sox9Q04887 Slc44a4-201ENSMUST00000007249 2261 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sox9Q04887 Gm20700-201ENSMUST00000176749 2206 ntTSL 3 BASIC11.98□□□□□ -0.49
Sox9Q04887 AC123834.1-201ENSMUST00000225346 2043 ntBASIC11.98□□□□□ -0.49
Sox9Q04887 Reep2-201ENSMUST00000043484 1926 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sox9Q04887 D430013B06Rik-201ENSMUST00000192922 1872 ntBASIC11.98□□□□□ -0.49
Sox9Q04887 Tcf4-252ENSMUST00000202477 1873 ntTSL 5 BASIC11.98□□□□□ -0.49
Sox9Q04887 Syt1-202ENSMUST00000105276 4820 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sox9Q04887 Lrp2bp-201ENSMUST00000066451 1525 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Sox9Q04887 AC159810.1-201ENSMUST00000214838 1480 ntBASIC11.98□□□□□ -0.49
Sox9Q04887 Samd4b-201ENSMUST00000040531 4349 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
Sox9Q04887 Klf11-201ENSMUST00000020982 4086 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sox9Q04887 Art5-203ENSMUST00000106935 495 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Sox9Q04887 Gm15707-201ENSMUST00000118804 996 ntBASIC11.98□□□□□ -0.49
Sox9Q04887 Gm16219-201ENSMUST00000120096 274 ntBASIC11.98□□□□□ -0.49
Sox9Q04887 Gm12705-201ENSMUST00000129460 872 ntTSL 2 BASIC11.98□□□□□ -0.49
Sox9Q04887 Gm17825-201ENSMUST00000206836 794 ntBASIC11.98□□□□□ -0.49
Sox9Q04887 Gm4903-201ENSMUST00000210462 405 ntBASIC11.98□□□□□ -0.49
Sox9Q04887 Gm5996-201ENSMUST00000211110 718 ntBASIC11.98□□□□□ -0.49
Sox9Q04887 Gm45875-201ENSMUST00000212178 781 ntTSL 3 BASIC11.98□□□□□ -0.49
Sox9Q04887 Nkain2-205ENSMUST00000219125 1166 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Sox9Q04887 CT025603.1-201ENSMUST00000224040 448 ntBASIC11.98□□□□□ -0.49
Sox9Q04887 Eef1akmt1-201ENSMUST00000022518 880 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sox9Q04887 Capsl-202ENSMUST00000226688 739 ntBASIC11.98□□□□□ -0.49
Sox9Q04887 Gm4978-201ENSMUST00000071565 801 ntBASIC11.98□□□□□ -0.49
Sox9Q04887 Epb41l2-204ENSMUST00000217929 3621 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Sox9Q04887 Tfe3-205ENSMUST00000115678 2658 ntTSL 5 BASIC11.98□□□□□ -0.49
Sox9Q04887 Spag6-201ENSMUST00000095132 2458 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sox9Q04887 Acer1-201ENSMUST00000056113 2429 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sox9Q04887 Taf6-202ENSMUST00000110936 2308 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sox9Q04887 Adra1a-206ENSMUST00000225182 2337 ntBASIC11.98□□□□□ -0.49
Sox9Q04887 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sox9Q04887 Tecpr1-201ENSMUST00000085701 5106 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sox9Q04887 Oasl1-201ENSMUST00000031540 2125 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sox9Q04887 Accs-201ENSMUST00000041593 2036 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sox9Q04887 Tle6-201ENSMUST00000072020 2015 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sox9Q04887 Smg8-201ENSMUST00000020801 3218 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sox9Q04887 Ripor1-201ENSMUST00000043531 4108 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sox9Q04887 Plxdc1-201ENSMUST00000017561 2881 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sox9Q04887 Spag9-202ENSMUST00000041956 7340 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sox9Q04887 Nhlh2-203ENSMUST00000198675 3943 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
Sox9Q04887 Ccdc15-204ENSMUST00000216042 1669 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sox9Q04887 Prkar1b-203ENSMUST00000110890 2626 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sox9Q04887 Pdlim2-201ENSMUST00000022681 1523 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sox9Q04887 Pex1-201ENSMUST00000006061 4433 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sox9Q04887 Zeb2-201ENSMUST00000028229 5335 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Sox9Q04887 Nit1-203ENSMUST00000111296 1394 ntTSL 5 BASIC11.97□□□□□ -0.49
Sox9Q04887 Nudt21-201ENSMUST00000034204 5010 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sox9Q04887 Kcnc1-203ENSMUST00000160433 3156 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sox9Q04887 Rad18-204ENSMUST00000113182 2220 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
Sox9Q04887 Zeb2-202ENSMUST00000068415 5624 ntAPPRIS P2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sox9Q04887 Trav12-3-201ENSMUST00000103657 442 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
Sox9Q04887 Atp5g3-202ENSMUST00000111996 723 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
Sox9Q04887 Gm12666-201ENSMUST00000123179 764 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
Sox9Q04887 Gm829-201ENSMUST00000123741 465 ntTSL 3 BASIC11.97□□□□□ -0.49
Sox9Q04887 Gm13802-201ENSMUST00000150159 663 ntTSL 3 BASIC11.97□□□□□ -0.49
Sox9Q04887 Rps19-ps10-201ENSMUST00000159750 435 ntBASIC11.97□□□□□ -0.49
Sox9Q04887 Gm9372-201ENSMUST00000168454 430 ntBASIC11.97□□□□□ -0.49
Sox9Q04887 Ppy-202ENSMUST00000170554 487 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sox9Q04887 Itgb1bp1-202ENSMUST00000172834 801 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Sox9Q04887 Lockd-205ENSMUST00000185152 496 ntTSL 5 BASIC11.97□□□□□ -0.49
Sox9Q04887 Gm8234-201ENSMUST00000198523 1107 ntBASIC11.97□□□□□ -0.49
Sox9Q04887 Gm43249-201ENSMUST00000200464 458 ntBASIC11.97□□□□□ -0.49
Sox9Q04887 Gstz1-203ENSMUST00000220574 971 ntTSL 2 BASIC11.97□□□□□ -0.49
Sox9Q04887 Gm31513-201ENSMUST00000223261 684 ntTSL 2 BASIC11.97□□□□□ -0.49
Sox9Q04887 Olfr981-201ENSMUST00000059859 997 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
Sox9Q04887 Utp23-203ENSMUST00000137116 2921 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sox9Q04887 Slc27a2-201ENSMUST00000061491 2918 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sox9Q04887 Ptch2-201ENSMUST00000030443 4382 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sox9Q04887 Plcg1-203ENSMUST00000109462 5107 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
Sox9Q04887 Twistnb-201ENSMUST00000020877 4325 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sox9Q04887 Lnx1-201ENSMUST00000039744 2727 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Sox9Q04887 Sgk3-201ENSMUST00000097826 2728 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sox9Q04887 Rab31-201ENSMUST00000070673 3476 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sox9Q04887 Msra-201ENSMUST00000067927 1860 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sox9Q04887 4931409K22Rik-201ENSMUST00000088302 2613 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 45.2 ms