Protein–RNA interactions for Protein: Q9DB34

Chmp2a, Charged multivesicular body protein 2a, mousemouse

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp2aQ9DB34 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC21.27■■□□□ 1
Chmp2aQ9DB34 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Chmp2aQ9DB34 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
Chmp2aQ9DB34 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Chmp2aQ9DB34 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Chmp2aQ9DB34 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Chmp2aQ9DB34 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Chmp2aQ9DB34 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Chmp2aQ9DB34 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Chmp2aQ9DB34 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC21.25■□□□□ 0.99
Chmp2aQ9DB34 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC21.25■□□□□ 0.99
Chmp2aQ9DB34 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Chmp2aQ9DB34 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Chmp2aQ9DB34 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Chmp2aQ9DB34 Gm13042-201ENSMUST00000119244 1955 ntBASIC21.25■□□□□ 0.99
Chmp2aQ9DB34 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Chmp2aQ9DB34 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC21.25■□□□□ 0.99
Chmp2aQ9DB34 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Chmp2aQ9DB34 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Chmp2aQ9DB34 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC21.24■□□□□ 0.99
Chmp2aQ9DB34 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC21.24■□□□□ 0.99
Chmp2aQ9DB34 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
Chmp2aQ9DB34 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Chmp2aQ9DB34 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Chmp2aQ9DB34 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Chmp2aQ9DB34 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Chmp2aQ9DB34 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Chmp2aQ9DB34 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC21.23■□□□□ 0.99
Chmp2aQ9DB34 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
Chmp2aQ9DB34 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Chmp2aQ9DB34 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Chmp2aQ9DB34 Gm6277-202ENSMUST00000224036 2779 ntBASIC21.23■□□□□ 0.99
Chmp2aQ9DB34 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Chmp2aQ9DB34 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Chmp2aQ9DB34 Gm5913-201ENSMUST00000119397 1399 ntBASIC21.23■□□□□ 0.99
Chmp2aQ9DB34 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC21.22■□□□□ 0.99
Chmp2aQ9DB34 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Chmp2aQ9DB34 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Chmp2aQ9DB34 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Chmp2aQ9DB34 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Chmp2aQ9DB34 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC21.22■□□□□ 0.99
Chmp2aQ9DB34 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
Chmp2aQ9DB34 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Chmp2aQ9DB34 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Chmp2aQ9DB34 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Chmp2aQ9DB34 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Chmp2aQ9DB34 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Chmp2aQ9DB34 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
Chmp2aQ9DB34 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Chmp2aQ9DB34 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Chmp2aQ9DB34 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Chmp2aQ9DB34 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Chmp2aQ9DB34 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
Chmp2aQ9DB34 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Chmp2aQ9DB34 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC21.2■□□□□ 0.98
Chmp2aQ9DB34 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Chmp2aQ9DB34 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Chmp2aQ9DB34 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Chmp2aQ9DB34 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
Chmp2aQ9DB34 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Chmp2aQ9DB34 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC21.18■□□□□ 0.98
Chmp2aQ9DB34 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Chmp2aQ9DB34 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC21.18■□□□□ 0.98
Chmp2aQ9DB34 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC21.18■□□□□ 0.98
Chmp2aQ9DB34 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Chmp2aQ9DB34 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Chmp2aQ9DB34 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC21.18■□□□□ 0.98
Chmp2aQ9DB34 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Chmp2aQ9DB34 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Chmp2aQ9DB34 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Chmp2aQ9DB34 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Chmp2aQ9DB34 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC21.18■□□□□ 0.98
Chmp2aQ9DB34 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Chmp2aQ9DB34 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Chmp2aQ9DB34 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC21.17■□□□□ 0.98
Chmp2aQ9DB34 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Chmp2aQ9DB34 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC21.17■□□□□ 0.98
Chmp2aQ9DB34 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Chmp2aQ9DB34 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Chmp2aQ9DB34 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Chmp2aQ9DB34 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC21.17■□□□□ 0.98
Chmp2aQ9DB34 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Chmp2aQ9DB34 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Chmp2aQ9DB34 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Chmp2aQ9DB34 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC21.16■□□□□ 0.98
Chmp2aQ9DB34 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC21.16■□□□□ 0.98
Chmp2aQ9DB34 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC21.16■□□□□ 0.98
Chmp2aQ9DB34 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC21.16■□□□□ 0.98
Chmp2aQ9DB34 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Chmp2aQ9DB34 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC21.16■□□□□ 0.98
Chmp2aQ9DB34 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Chmp2aQ9DB34 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Chmp2aQ9DB34 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC21.15■□□□□ 0.98
Chmp2aQ9DB34 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Chmp2aQ9DB34 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC21.15■□□□□ 0.98
Chmp2aQ9DB34 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Chmp2aQ9DB34 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC21.15■□□□□ 0.98
Chmp2aQ9DB34 Gm9870-201ENSMUST00000063874 645 ntBASIC21.15■□□□□ 0.98
Chmp2aQ9DB34 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Chmp2aQ9DB34 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC21.15■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 13.8 ms